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Protein

Protein LSM12 homolog

Gene

Lsm12

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Protein LSM12 homolog
Gene namesi
Name:Lsm12
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 11

Organism-specific databases

MGIiMGI:1919592 Lsm12

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00003051272 – 195Protein LSM12 homologAdd BLAST194

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylalanineBy similarity1
Modified residuei75PhosphothreonineCombined sources1

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

EPDiQ9D0R8
MaxQBiQ9D0R8
PaxDbiQ9D0R8
PeptideAtlasiQ9D0R8
PRIDEiQ9D0R8

PTM databases

iPTMnetiQ9D0R8
PhosphoSitePlusiQ9D0R8

Expressioni

Gene expression databases

BgeeiENSMUSG00000020922
CleanExiMM_LSM12
ExpressionAtlasiQ9D0R8 baseline and differential
GenevisibleiQ9D0R8 MM

Interactioni

Protein-protein interaction databases

BioGridi234509, 1 interactor
IntActiQ9D0R8, 1 interactor
MINTiQ9D0R8
STRINGi10090.ENSMUSP00000021297

Structurei

3D structure databases

ProteinModelPortaliQ9D0R8
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the LSM12 family.Curated

Phylogenomic databases

eggNOGiKOG4401 Eukaryota
ENOG410Y6A1 LUCA
GeneTreeiENSGT00390000006956
HOGENOMiHOG000006611
HOVERGENiHBG057351
InParanoidiQ9D0R8
OMAiGKPNLND
OrthoDBiEOG091G0RRA
PhylomeDBiQ9D0R8
TreeFamiTF324296

Family and domain databases

InterProiView protein in InterPro
IPR019181 Anticodon-binding_dom
PfamiView protein in Pfam
PF09793 AD, 1 hit
SMARTiView protein in SMART
SM00995 AD, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9D0R8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAPPGEYFS VGSQVSCRTC QEQRLQGEVV AFDYQSKMLA LKCPSSSGKP
60 70 80 90 100
NHADILLINL QYVSEVEIIN DRTETPPPLA SLNVSKLASK ARTEKEEKLS
110 120 130 140 150
QAYAISAGVS LEGQQLFQTI HKTIKDCKWQ EKNIVVMEEV VITPPYQVEN
160 170 180 190
CKGKEGSALS HVRKIVEKHF RDVESQKILQ RSQAQQPQKE AALSS
Length:195
Mass (Da):21,701
Last modified:June 1, 2001 - v1
Checksum:iBCEDE62DA43D86C7
GO

Sequence cautioni

The sequence CAM16077 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence CAM25069 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK011126 mRNA Translation: BAB27419.1
AK075668 mRNA Translation: BAC35885.1
AK132889 mRNA Translation: BAE21407.1
AK151118 mRNA Translation: BAE30127.1
BX323852, AL954730 Genomic DNA Translation: CAM16076.1
BX323852, AL954730 Genomic DNA Translation: CAM16077.1 Sequence problems.
AL954730, BX323852 Genomic DNA Translation: CAM25068.1
AL954730, BX323852 Genomic DNA Translation: CAM25069.1 Sequence problems.
BC027784 mRNA Translation: AAH27784.1
CCDSiCCDS25490.1
RefSeqiNP_766535.1, NM_172947.3
XP_006533477.1, XM_006533414.3
UniGeneiMm.259079

Genome annotation databases

EnsembliENSMUST00000021297; ENSMUSP00000021297; ENSMUSG00000020922
GeneIDi268490
KEGGimmu:268490
UCSCiuc007lqs.1 mouse

Similar proteinsi

Entry informationi

Entry nameiLSM12_MOUSE
AccessioniPrimary (citable) accession number: Q9D0R8
Secondary accession number(s): A2AWS3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 2, 2007
Last sequence update: June 1, 2001
Last modified: March 28, 2018
This is version 107 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

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