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Protein

Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial

Gene

PCMP-H52

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Involved in C-to-U editing of mitochondrial RNA. Required specifically for editing the mitochondrial NAD2 transcript.1 Publication

GO - Molecular functioni

GO - Biological processi

  • cytidine to uridine editing Source: TAIR
  • mRNA processing Source: UniProtKB-KW

Keywordsi

Biological processmRNA processing

Names & Taxonomyi

Protein namesi
Recommended name:
Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial
Alternative name(s):
Mitochondrial RNA editing factor 101 Publication
Gene namesi
Name:PCMP-H52
Synonyms:MEF101 Publication
Ordered Locus Names:At3g11460
ORF Names:F24K9.13
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G11460
TAIRilocus:2080727 AT3G11460

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 35MitochondrionSequence analysisAdd BLAST35
ChainiPRO_000035608236 – 623Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrialAdd BLAST588

Proteomic databases

PaxDbiQ9CAY1
PRIDEiQ9CAY1

Expressioni

Gene expression databases

ExpressionAtlasiQ9CAY1 baseline and differential
GenevisibleiQ9CAY1 AT

Interactioni

Subunit structurei

Interacts with MORF8/RIP1.1 Publication

Protein-protein interaction databases

BioGridi5653, 1 interactor
STRINGi3702.AT3G11460.1

Structurei

3D structure databases

ProteinModelPortaliQ9CAY1
SMRiQ9CAY1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati17 – 51PPR 1Add BLAST35
Repeati52 – 86PPR 2Add BLAST35
Repeati87 – 117PPR 3Add BLAST31
Repeati120 – 154PPR 4Add BLAST35
Repeati155 – 189PPR 5Add BLAST35
Repeati190 – 220PPR 6Add BLAST31
Repeati221 – 255PPR 7Add BLAST35
Repeati256 – 290PPR 8Add BLAST35
Repeati291 – 321PPR 9Add BLAST31
Repeati322 – 356PPR 10Add BLAST35
Repeati357 – 387PPR 11Add BLAST31
Repeati393 – 423PPR 12Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni428 – 503Type E motifAdd BLAST76
Regioni504 – 535Type E(+) motifAdd BLAST32
Regioni536 – 623Type DYW motifAdd BLAST88

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiQ9CAY1
OMAiFDENPQS
OrthoDBiEOG093605TK
PhylomeDBiQ9CAY1

Family and domain databases

Gene3Di1.25.40.10, 4 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 3 hits
PF13041 PPR_2, 3 hits
TIGRFAMsiTIGR00756 PPR, 6 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 13 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9CAY1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIVVTSFVRN SAVAAVASTP WNVRLRELAY QSLFSESISL YRSMLRSGSS
60 70 80 90 100
PDAFSFPFIL KSCASLSLPV SGQQLHCHVT KGGCETEPFV LTALISMYCK
110 120 130 140 150
CGLVADARKV FEENPQSSQL SVCYNALISG YTANSKVTDA AYMFRRMKET
160 170 180 190 200
GVSVDSVTML GLVPLCTVPE YLWLGRSLHG QCVKGGLDSE VAVLNSFITM
210 220 230 240 250
YMKCGSVEAG RRLFDEMPVK GLITWNAVIS GYSQNGLAYD VLELYEQMKS
260 270 280 290 300
SGVCPDPFTL VSVLSSCAHL GAKKIGHEVG KLVESNGFVP NVFVSNASIS
310 320 330 340 350
MYARCGNLAK ARAVFDIMPV KSLVSWTAMI GCYGMHGMGE IGLMLFDDMI
360 370 380 390 400
KRGIRPDGAV FVMVLSACSH SGLTDKGLEL FRAMKREYKL EPGPEHYSCL
410 420 430 440 450
VDLLGRAGRL DEAMEFIESM PVEPDGAVWG ALLGACKIHK NVDMAELAFA
460 470 480 490 500
KVIEFEPNNI GYYVLMSNIY SDSKNQEGIW RIRVMMRERA FRKKPGYSYV
510 520 530 540 550
EHKGRVHLFL AGDRSHEQTE EVHRMLDELE TSVMELAGNM DCDRGEEVSS
560 570 580 590 600
TTREHSERLA IAFGILNSIP GTEILVIKNL RVCEDCHVFL KQVSKIVDRQ
610 620
FVVRDASRFH YFKDGVCSCK DYW
Length:623
Mass (Da):69,127
Last modified:June 1, 2001 - v1
Checksum:iEDF4A2CACE9157F6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC008153 Genomic DNA Translation: AAG51440.1
CP002686 Genomic DNA Translation: AEE75049.1
RefSeqiNP_187753.1, NM_111979.1
UniGeneiAt.53270

Genome annotation databases

EnsemblPlantsiAT3G11460.1; AT3G11460.1; AT3G11460
GeneIDi820319
GrameneiAT3G11460.1; AT3G11460.1; AT3G11460
KEGGiath:AT3G11460

Similar proteinsi

Entry informationi

Entry nameiPP223_ARATH
AccessioniPrimary (citable) accession number: Q9CAY1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: June 1, 2001
Last modified: April 25, 2018
This is version 93 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

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