Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Pentatricopeptide repeat-containing protein At1g63080, mitochondrial

Gene

At1g63080

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At1g63080, mitochondrial
Gene namesi
Ordered Locus Names:At1g63080
ORF Names:F16M19.17
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G63080
TAIRilocus:2015228 AT1G63080

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 7MitochondrionSequence analysis7
ChainiPRO_00003428398 – 614Pentatricopeptide repeat-containing protein At1g63080, mitochondrialAdd BLAST607

Proteomic databases

PaxDbiQ9CAN5

Expressioni

Gene expression databases

ExpressionAtlasiQ9CAN5 baseline and differential
GenevisibleiQ9CAN5 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G63080.1

Structurei

3D structure databases

ProteinModelPortaliQ9CAN5
SMRiQ9CAN5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati64 – 98PPR 1Add BLAST35
Repeati99 – 133PPR 2Add BLAST35
Repeati134 – 168PPR 3Add BLAST35
Repeati169 – 203PPR 4Add BLAST35
Repeati204 – 238PPR 5Add BLAST35
Repeati239 – 273PPR 6Add BLAST35
Repeati274 – 308PPR 7Add BLAST35
Repeati309 – 343PPR 8Add BLAST35
Repeati344 – 378PPR 9Add BLAST35
Repeati379 – 413PPR 10Add BLAST35
Repeati414 – 448PPR 11Add BLAST35
Repeati449 – 483PPR 12Add BLAST35
Repeati484 – 518PPR 13Add BLAST35
Repeati519 – 553PPR 14Add BLAST35
Repeati554 – 588PPR 15Add BLAST35

Sequence similaritiesi

Belongs to the PPR family. P subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000015176
InParanoidiQ9CAN5
OMAiEEMITRG
OrthoDBiEOG093604J5
PhylomeDBiQ9CAN5

Family and domain databases

Gene3Di1.25.40.10, 7 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535 PPR, 1 hit
PF12854 PPR_1, 2 hits
PF13041 PPR_2, 6 hits
SUPFAMiSSF48452 SSF48452, 1 hit
TIGRFAMsiTIGR00756 PPR, 14 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 15 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9CAN5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLAKRFVHL RKASPSFCLR GIYFSGLSYD GYREKLSRNA LLHLKLDEAV
60 70 80 90 100
DLFGEMVKSR PFPSIVEFSK LLSAIAKMKK FDLVISFGEK MEILGVSHNL
110 120 130 140 150
YTYNIMINCL CRRSQLSFAL AILGKMMKLG YGPSIVTLNS LLNGFCHGNR
160 170 180 190 200
ISEAVALVDQ MVEMGYQPDT VTFTTLVHGL FQHNKASEAV ALVERMVVKG
210 220 230 240 250
CQPDLVTYGA VINGLCKRGE PDLALNLLNK MEKGKIEADV VIYSTVIDSL
260 270 280 290 300
CKYRHVDDAL NLFTEMDNKG IRPDVFTYSS LISCLCNYGR WSDASRLLSD
310 320 330 340 350
MLERKINPNV VTFNSLIDAF AKEGKLIEAE KLFDEMIQRS IDPNIVTYNS
360 370 380 390 400
LINGFCMHDR LDEAQQIFTL MVSKDCLPDV VTYNTLINGF CKAKKVVDGM
410 420 430 440 450
ELFRDMSRRG LVGNTVTYTT LIHGFFQASD CDNAQMVFKQ MVSDGVHPNI
460 470 480 490 500
MTYNTLLDGL CKNGKLEKAM VVFEYLQKSK MEPDIYTYNI MSEGMCKAGK
510 520 530 540 550
VEDGWDLFCS LSLKGVKPDV IAYNTMISGF CKKGLKEEAY TLFIKMKEDG
560 570 580 590 600
PLPDSGTYNT LIRAHLRDGD KAASAELIKE MRSCRFAGDA STYGLVTDML
610
HDGRLDKGFL EVLS
Length:614
Mass (Da):68,848
Last modified:June 1, 2001 - v1
Checksum:i794359B044263752
GO

Sequence cautioni

The sequence AK226724 differs from that shown. Reason: Frameshift at position 7.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC010795 Genomic DNA Translation: AAG51614.1
CP002684 Genomic DNA Translation: AEE34051.1
CP002684 Genomic DNA Translation: ANM58874.1
CP002684 Genomic DNA Translation: ANM58875.1
AK226724 mRNA No translation available.
PIRiB96656
RefSeqiNP_001319297.1, NM_001334064.1
NP_001321279.1, NM_001334065.1
NP_176496.1, NM_104986.3
UniGeneiAt.64076

Genome annotation databases

EnsemblPlantsiAT1G63080.1; AT1G63080.1; AT1G63080
AT1G63080.2; AT1G63080.2; AT1G63080
AT1G63080.3; AT1G63080.3; AT1G63080
GeneIDi842611
GrameneiAT1G63080.1; AT1G63080.1; AT1G63080
AT1G63080.2; AT1G63080.2; AT1G63080
AT1G63080.3; AT1G63080.3; AT1G63080
KEGGiath:AT1G63080

Similar proteinsi

Entry informationi

Entry nameiPPR98_ARATH
AccessioniPrimary (citable) accession number: Q9CAN5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: June 1, 2001
Last modified: April 25, 2018
This is version 95 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health