UniProtKB - Q9CAA8 (PP108_ARATH)
Protein
Putative pentatricopeptide repeat-containing protein At1g68930
Gene
PCMP-H22
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Functioni
GO - Molecular functioni
- RNA binding Source: GO_Central
- zinc ion binding Source: InterPro
GO - Biological processi
- RNA modification Source: GO_Central
Names & Taxonomyi
Protein namesi | Recommended name: Putative pentatricopeptide repeat-containing protein At1g68930 |
Gene namesi | Name:PCMP-H22 Ordered Locus Names:At1g68930 ORF Names:T6L1.11 |
Organismi | Arabidopsis thaliana (Mouse-ear cress) |
Taxonomic identifieri | 3702 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis |
Proteomesi |
|
Organism-specific databases
Araporti | AT1G68930 |
TAIRi | locus:2205425, AT1G68930 |
Subcellular locationi
Other locations
- intracellular membrane-bounded organelle Source: GO_Central
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000342849 | 1 – 743 | Putative pentatricopeptide repeat-containing protein At1g68930Add BLAST | 743 |
Proteomic databases
PaxDbi | Q9CAA8 |
PRIDEi | Q9CAA8 |
ProteomicsDBi | 249129 |
Expressioni
Gene expression databases
ExpressionAtlasi | Q9CAA8, baseline and differential |
Genevisiblei | Q9CAA8, AT |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Repeati | 40 – 70 | PPR 1Add BLAST | 31 | |
Repeati | 71 – 101 | PPR 2Add BLAST | 31 | |
Repeati | 102 – 132 | PPR 3Add BLAST | 31 | |
Repeati | 138 – 172 | PPR 4Add BLAST | 35 | |
Repeati | 173 – 203 | PPR 5Add BLAST | 31 | |
Repeati | 204 – 233 | PPR 6Add BLAST | 30 | |
Repeati | 234 – 268 | PPR 7Add BLAST | 35 | |
Repeati | 269 – 303 | PPR 8Add BLAST | 35 | |
Repeati | 304 – 334 | PPR 9Add BLAST | 31 | |
Repeati | 335 – 369 | PPR 10Add BLAST | 35 | |
Repeati | 370 – 404 | PPR 11Add BLAST | 35 | |
Repeati | 405 – 435 | PPR 12Add BLAST | 31 | |
Repeati | 436 – 470 | PPR 13Add BLAST | 35 | |
Repeati | 471 – 506 | PPR 14Add BLAST | 36 | |
Repeati | 507 – 537 | PPR 15Add BLAST | 31 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 542 – 617 | Type E motifAdd BLAST | 76 | |
Regioni | 618 – 648 | Type E(+) motifAdd BLAST | 31 | |
Regioni | 649 – 743 | Type DYW motifAdd BLAST | 95 |
Sequence similaritiesi
Keywords - Domaini
RepeatPhylogenomic databases
eggNOGi | KOG4197, Eukaryota |
HOGENOMi | CLU_002706_15_5_1 |
InParanoidi | Q9CAA8 |
OrthoDBi | 1344243at2759 |
PhylomeDBi | Q9CAA8 |
Family and domain databases
Gene3Di | 1.25.40.10, 3 hits |
InterProi | View protein in InterPro IPR032867, DYW_dom IPR002885, Pentatricopeptide_repeat IPR011990, TPR-like_helical_dom_sf |
Pfami | View protein in Pfam PF14432, DYW_deaminase, 1 hit PF01535, PPR, 4 hits PF13041, PPR_2, 3 hits |
SUPFAMi | SSF48452, SSF48452, 1 hit |
TIGRFAMsi | TIGR00756, PPR, 8 hits |
PROSITEi | View protein in PROSITE PS51375, PPR, 16 hits |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All
Q9CAA8-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MASNYYSVQI KQCIGLGARN QSRYVKMIHG NIIRALPYPE TFLYNNIVHA
60 70 80 90 100
YALMKSSTYA RRVFDRIPQP NLFSWNNLLL AYSKAGLISE MESTFEKLPD
110 120 130 140 150
RDGVTWNVLI EGYSLSGLVG AAVKAYNTMM RDFSANLTRV TLMTMLKLSS
160 170 180 190 200
SNGHVSLGKQ IHGQVIKLGF ESYLLVGSPL LYMYANVGCI SDAKKVFYGL
210 220 230 240 250
DDRNTVMYNS LMGGLLACGM IEDALQLFRG MEKDSVSWAA MIKGLAQNGL
260 270 280 290 300
AKEAIECFRE MKVQGLKMDQ YPFGSVLPAC GGLGAINEGK QIHACIIRTN
310 320 330 340 350
FQDHIYVGSA LIDMYCKCKC LHYAKTVFDR MKQKNVVSWT AMVVGYGQTG
360 370 380 390 400
RAEEAVKIFL DMQRSGIDPD HYTLGQAISA CANVSSLEEG SQFHGKAITS
410 420 430 440 450
GLIHYVTVSN SLVTLYGKCG DIDDSTRLFN EMNVRDAVSW TAMVSAYAQF
460 470 480 490 500
GRAVETIQLF DKMVQHGLKP DGVTLTGVIS ACSRAGLVEK GQRYFKLMTS
510 520 530 540 550
EYGIVPSIGH YSCMIDLFSR SGRLEEAMRF INGMPFPPDA IGWTTLLSAC
560 570 580 590 600
RNKGNLEIGK WAAESLIELD PHHPAGYTLL SSIYASKGKW DSVAQLRRGM
610 620 630 640 650
REKNVKKEPG QSWIKWKGKL HSFSADDESS PYLDQIYAKL EELNNKIIDN
660 670 680 690 700
GYKPDTSFVH HDVEEAVKVK MLNYHSERLA IAFGLIFVPS GQPIRVGKNL
710 720 730 740
RVCVDCHNAT KHISSVTGRE ILVRDAVRFH RFKDGTCSCG DFW
Computationally mapped potential isoform sequencesi
There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basketA0A1P8ANL0 | A0A1P8ANL0_ARATH | Pentatricopeptide (PPR) repeat-cont... | At1g68930, T6L1.11, T6L1_11 | 717 | Annotation score: |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AC011665 Genomic DNA Translation: AAG51585.1 CP002684 Genomic DNA Translation: AEE34864.1 |
PIRi | H96713 |
RefSeqi | NP_001319351.1, NM_001334391.1 |
Genome annotation databases
EnsemblPlantsi | AT1G68930.1; AT1G68930.1; AT1G68930 |
GeneIDi | 843226 |
Gramenei | AT1G68930.1; AT1G68930.1; AT1G68930 |
KEGGi | ath:AT1G68930 |
Similar proteinsi
Cross-referencesi
Web resourcesi
Pentatricopeptide repeat proteins |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AC011665 Genomic DNA Translation: AAG51585.1 CP002684 Genomic DNA Translation: AEE34864.1 |
PIRi | H96713 |
RefSeqi | NP_001319351.1, NM_001334391.1 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Proteomic databases
PaxDbi | Q9CAA8 |
PRIDEi | Q9CAA8 |
ProteomicsDBi | 249129 |
Genome annotation databases
EnsemblPlantsi | AT1G68930.1; AT1G68930.1; AT1G68930 |
GeneIDi | 843226 |
Gramenei | AT1G68930.1; AT1G68930.1; AT1G68930 |
KEGGi | ath:AT1G68930 |
Organism-specific databases
Araporti | AT1G68930 |
TAIRi | locus:2205425, AT1G68930 |
Phylogenomic databases
eggNOGi | KOG4197, Eukaryota |
HOGENOMi | CLU_002706_15_5_1 |
InParanoidi | Q9CAA8 |
OrthoDBi | 1344243at2759 |
PhylomeDBi | Q9CAA8 |
Miscellaneous databases
PROi | PR:Q9CAA8 |
Gene expression databases
ExpressionAtlasi | Q9CAA8, baseline and differential |
Genevisiblei | Q9CAA8, AT |
Family and domain databases
Gene3Di | 1.25.40.10, 3 hits |
InterProi | View protein in InterPro IPR032867, DYW_dom IPR002885, Pentatricopeptide_repeat IPR011990, TPR-like_helical_dom_sf |
Pfami | View protein in Pfam PF14432, DYW_deaminase, 1 hit PF01535, PPR, 4 hits PF13041, PPR_2, 3 hits |
SUPFAMi | SSF48452, SSF48452, 1 hit |
TIGRFAMsi | TIGR00756, PPR, 8 hits |
PROSITEi | View protein in PROSITE PS51375, PPR, 16 hits |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | PP108_ARATH | |
Accessioni | Q9CAA8Primary (citable) accession number: Q9CAA8 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | July 1, 2008 |
Last sequence update: | June 1, 2001 | |
Last modified: | December 2, 2020 | |
This is version 108 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Plant Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- Arabidopsis thaliana
Arabidopsis thaliana: entries and gene names - SIMILARITY comments
Index of protein domains and families