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UniProtKB - Q9C5Q8 (HEN1_ARATH)

Entry version 122 (07 Apr 2021)
Sequence version 1 (01 Jun 2001)
Previous versions | rss
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Protein

Small RNA 2'-O-methyltransferase

Gene

HEN1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Methyltransferase that adds a methyl group to the ribose of the last nucleotide of small RNAs (sRNAs). This protects the 3'-end of sRNAs from uridylation activity and subsequent degradation. Can methylate 3'-end of microRNAs (miRNAs), small interfering RNAs (siRNas) and trans-acting small interfering RNAs (ta-siRNAs). Involved in plant development through its role in small RNAs processing. Required for the specification of reproductive organ identities and the probable repression of A class genes. May control floral determinacy possibly by regulating the expression of the C class floral homeotic gene AGAMOUS (AG).4 Publications

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>This subsection of the 'Function' section provides information relevant to cofactors. A cofactor is any non-protein substance required for a protein to be catalytically active. Some cofactors are inorganic, such as the metal atoms zinc, iron, and copper in various oxidation states. Others, such as most vitamins, are organic.<p><a href='/help/cofactor' target='_top'>More...</a></p>Cofactori

Mg2+1 PublicationNote: Binds 1 Mg2+ ion per subunit.1 Publication

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the interaction between a single amino acid and another chemical entity. Priority is given to the annotation of physiological ligands.<p><a href='/help/binding' target='_top'>More...</a></p>Binding sitei726S-adenosyl-L-methionineCombined sources1 Publication1
Binding sitei745S-adenosyl-L-methionineCombined sources1 Publication1
Binding sitei795S-adenosyl-L-methionine; via carbonyl oxygenCombined sources1 Publication1
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the 'Description' field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi796MagnesiumCombined sources1 Publication1
Metal bindingi799MagnesiumCombined sources1 Publication1
Metal bindingi800Magnesium; via tele nitrogenCombined sources1 Publication1
Metal bindingi860Magnesium; via tele nitrogenCombined sources1 Publication1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionMethyltransferase, RNA-binding, Transferase
Biological processRNA-mediated gene silencing
LigandMagnesium, Metal-binding, S-adenosyl-L-methionine

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Small RNA 2'-O-methyltransferase (EC:2.1.1.n8)
Alternative name(s):
Protein CORYMBOSA 2
Protein HUA ENHANCER 1
S-adenosylmethionine-dependent RNA methyltransferase HEN1
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:HEN1
Synonyms:CRM2
Ordered Locus Names:At4g20910
ORF Names:T13K14.70
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 4

Organism-specific databases

Arabidopsis Information Portal

More...Araporti		AT4G20910

The Arabidopsis Information Resource

More...TAIRi		locus:2133114, AT4G20910

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the 'Pathology and Biotech' section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

Reduced organ size, altered rosette leaf shape and increased number of coflorescences. Urydilation of miRNA 3'-ends.3 Publications

Mutagenesis

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/manual/pathology%5Fand%5Fbiotech%5Fsection">'Pathology and Biotech'</a> section describes the effect of the experimental mutation of one or more amino acid(s) on the biological properties of the protein.<p><a href='/help/mutagen' target='_top'>More...</a></p>Mutagenesisi68Missing in crm2-1; compact inflorescence with several flower buds at the tip. 1 Publication1
Mutagenesisi109Y → A: No effect on RNA binding and transferase activity. 1 Publication1
Mutagenesisi333W → A: Loss of RNA binding and transferase activity. 1 Publication1
Mutagenesisi604L → P: No effect on transferase activity. 1 Publication1
Mutagenesisi701R → A: Reduces transferase activity. 1 Publication1
Mutagenesisi719D → N in hen1-2; alters organ development and floral determinacy. 1 Publication1
Mutagenesisi796E → A: Loss of transferase activity. 1 Publication1
Mutagenesisi799E → A: Loss of transferase activity; when associated with A-800. 1 Publication1
Mutagenesisi800H → A: Loss of transferase activity; when associated with A-799. 1 Publication1
Mutagenesisi800H → Q: Strongly decreases transferase activity. 1 Publication1
Mutagenesisi856R → A: Reduces transferase activity. 1 Publication1
Mutagenesisi860H → A or Q: Loss of transferase activity. 1 Publication1

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004046581 – 942Small RNA 2'-O-methyltransferaseAdd BLAST942

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		Q9C5Q8

PRoteomics IDEntifications database

More...PRIDEi		Q9C5Q8

ProteomicsDB: a multi-organism proteome resource

More...ProteomicsDBi		230384

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...iPTMneti		Q9C5Q8

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the 'Expression' section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified 'at protein level'.<br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed in stems, leaves and inflorescences.2 Publications

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...ExpressionAtlasi		Q9C5Q8, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...Genevisiblei		Q9C5Q8, AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Binds small RNA duplexes as monomer.

1 Publication

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...BioGRIDi		13130, 3 interactors

STRING: functional protein association networks

More...STRINGi		3702.AT4G20910.2

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

1942
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		Q9C5Q8

Database of comparative protein structure models

More...ModBasei		Search...

Protein Data Bank in Europe - Knowledge Base

More...PDBe-KBi		Search...

Miscellaneous databases

Relative evolutionary importance of amino acids within a protein sequence

More...EvolutionaryTracei		Q9C5Q8

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini19 – 87DRBMAdd BLAST69
Domaini93 – 204HTH La-type RNA-bindingPROSITE-ProRule annotationAdd BLAST112

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni778 – 779S-adenosyl-L-methionine bindingCombined sources1 Publication2

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the methyltransferase superfamily. HEN1 family.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		KOG1045, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_001342_0_0_1

Identification of Orthologs from Complete Genome Data

More...OMAi		ACYSVEE

Database of Orthologous Groups

More...OrthoDBi		189384at2759

Database for complete collections of gene phylogenies

More...PhylomeDBi		Q9C5Q8

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR040870, HEN1_dsRBD2
IPR040813, Hen1_Lam_C
IPR006630, La_HTH
IPR025714, Methyltranfer_dom
IPR029063, SAM-dependent_MTases

Pfam protein domain database

More...Pfami		View protein in Pfam
PF17842, dsRBD2, 1 hit
PF18441, Hen1_Lam_C, 1 hit
PF13847, Methyltransf_31, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF53335, SSF53335, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50961, HTH_LA, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9C5Q8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAGGGKHTPT PKAIIHQKFG AKASYTVEEV HDSSQSGCLG LAIPQKGPCL 
        60         70         80         90        100
YRCHLQLPEF SVVSNVFKKK KDSEQSAAEL ALDKLGIRPQ NDDLTVDEAR 
       110        120        130        140        150
DEIVGRIKYI FSDEFLSAEH PLGAHLRAAL RRDGERCGSV PVSVIATVDA 
       160        170        180        190        200
KINSRCKIIN PSVESDPFLA ISYVMKAAAK LADYIVASPH GLRRKNAYPS 
       210        220        230        240        250
EIVEALATHV SDSLHSREVA AVYIPCIDEE VVELDTLYIS SNRHYLDSIA 
       260        270        280        290        300
ERLGLKDGNQ VMISRMFGKA SCGSECRLYS EIPKKYLDNS SDASGTSNED 
       310        320        330        340        350
SSHIVKSRNA RASYICGQDI HGDAILASVG YRWKSDDLDY DDVTVNSFYR 
       360        370        380        390        400
ICCGMSPNGI YKISRQAVIA AQLPFAFTTK SNWRGPLPRE ILGLFCHQHR 
       410        420        430        440        450
LAEPILSSST APVKSLSDIF RSHKKLKVSG VDDANENLSR QKEDTPGLGH 
       460        470        480        490        500
GFRCEVKIFT KSQDLVLECS PRKFYEKEND AIQNASLKAL LWFSKFFADL 
       510        520        530        540        550
DVDGEQSCDT DDDQDTKSSS PNVFAAPPIL QKEHSSESKN TNVLSAEKRV 
       560        570        580        590        600
QSITNGSVVS ICYSLSLAVD PEYSSDGESP REDNESNEEM ESEYSANCES 
       610        620        630        640        650
SVELIESNEE IEFEVGTGSM NPHIESEVTQ MTVGEYASFR MTPPDAAEAL 
       660        670        680        690        700
ILAVGSDTVR IRSLLSERPC LNYNILLLGV KGPSEERMEA AFFKPPLSKQ 
       710        720        730        740        750
RVEYALKHIR ESSASTLVDF GCGSGSLLDS LLDYPTSLQT IIGVDISPKG 
       760        770        780        790        800
LARAAKMLHV KLNKEACNVK SATLYDGSIL EFDSRLHDVD IGTCLEVIEH 
       810        820        830        840        850
MEEDQACEFG EKVLSLFHPK LLIVSTPNYE FNTILQRSTP ETQEENNSEP 
       860        870        880        890        900
QLPKFRNHDH KFEWTREQFN QWASKLGKRH NYSVEFSGVG GSGEVEPGFA 
       910        920        930        940 
SQIAIFRREA SSVENVAESS MQPYKVIWEW KKEDVEKKKT DL
Length:942
Mass (Da):104,454
Last modified:June 1, 2001 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i7D8B5222C0D28779
GO

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence CAB45886 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence CAB79091 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti39L → P in AAC97105 (Ref. 1) Curated1
Sequence conflicti39L → P in AAL05056 (PubMed:11874905).Curated1
Sequence conflicti552S → Y in AAC97105 (Ref. 1) Curated1
Sequence conflicti660R → K in AAC97105 (Ref. 1) Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AF060248 Genomic DNA Translation: AAC97105.1
AF411383 mRNA Translation: AAL05056.1
AF327068 mRNA Translation: AAK16435.1
AL080282 Genomic DNA Translation: CAB45886.1 Sequence problems.
AL161553 Genomic DNA Translation: CAB79091.1 Sequence problems.
CP002687 Genomic DNA Translation: AEE84374.1
CP002687 Genomic DNA Translation: AEE84375.1

Protein sequence database of the Protein Information Resource

More...PIRi		T10633

NCBI Reference Sequences

More...RefSeqi		NP_001190782.1, NM_001203853.2
NP_567616.1, NM_118209.3

Genome annotation databases

Ensembl plant genome annotation project

More...EnsemblPlantsi		AT4G20910.1; AT4G20910.1; AT4G20910
AT4G20910.2; AT4G20910.2; AT4G20910

Database of genes from NCBI RefSeq genomes

More...GeneIDi		827839

Gramene; a comparative resource for plants

More...Gramenei		AT4G20910.1; AT4G20910.1; AT4G20910
AT4G20910.2; AT4G20910.2; AT4G20910

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		ath:AT4G20910

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF060248 Genomic DNA Translation: AAC97105.1
AF411383 mRNA Translation: AAL05056.1
AF327068 mRNA Translation: AAK16435.1
AL080282 Genomic DNA Translation: CAB45886.1 Sequence problems.
AL161553 Genomic DNA Translation: CAB79091.1 Sequence problems.
CP002687 Genomic DNA Translation: AEE84374.1
CP002687 Genomic DNA Translation: AEE84375.1
PIRiT10633
RefSeqiNP_001190782.1, NM_001203853.2
NP_567616.1, NM_118209.3

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...PDBei

Protein Data Bank RCSB

More...RCSB PDBi

Protein Data Bank Japan

More...PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3HTXX-ray3.10A/D1-942[»]
SMRiQ9C5Q8
ModBaseiSearch...
PDBe-KBiSearch...

Protein-protein interaction databases

BioGRIDi13130, 3 interactors
STRINGi3702.AT4G20910.2

PTM databases

iPTMnetiQ9C5Q8

Proteomic databases

PaxDbiQ9C5Q8
PRIDEiQ9C5Q8
ProteomicsDBi230384

Genome annotation databases

EnsemblPlantsiAT4G20910.1; AT4G20910.1; AT4G20910
AT4G20910.2; AT4G20910.2; AT4G20910
GeneIDi827839
GrameneiAT4G20910.1; AT4G20910.1; AT4G20910
AT4G20910.2; AT4G20910.2; AT4G20910
KEGGiath:AT4G20910

Organism-specific databases

AraportiAT4G20910
TAIRilocus:2133114, AT4G20910

Phylogenomic databases

eggNOGiKOG1045, Eukaryota
HOGENOMiCLU_001342_0_0_1
OMAiACYSVEE
OrthoDBi189384at2759
PhylomeDBiQ9C5Q8

Miscellaneous databases

EvolutionaryTraceiQ9C5Q8

Protein Ontology

More...PROi		PR:Q9C5Q8

Gene expression databases

ExpressionAtlasiQ9C5Q8, baseline and differential
GenevisibleiQ9C5Q8, AT

Family and domain databases

InterProiView protein in InterPro
IPR040870, HEN1_dsRBD2
IPR040813, Hen1_Lam_C
IPR006630, La_HTH
IPR025714, Methyltranfer_dom
IPR029063, SAM-dependent_MTases
PfamiView protein in Pfam
PF17842, dsRBD2, 1 hit
PF18441, Hen1_Lam_C, 1 hit
PF13847, Methyltransf_31, 1 hit
SUPFAMiSSF53335, SSF53335, 1 hit
PROSITEiView protein in PROSITE
PS50961, HTH_LA, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiHEN1_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9C5Q8
Secondary accession number(s): O65309, Q945R3, Q9SUC2
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 8, 2011
Last sequence update: June 1, 2001
Last modified: April 7, 2021
This is version 122 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families
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