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Protein

Probable pectate lyase 18

Gene

At4g24780

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

  • Eliminative cleavage of (1->4)-alpha-D-galacturonan to give oligosaccharides with 4-deoxy-alpha-D-galact-4-enuronosyl groups at their non-reducing ends. EC:4.2.2.2

<p>This subsection of the ‘Function’ section provides information relevant to cofactors. A cofactor is any non-protein substance required for a protein to be catalytically active. Some cofactors are inorganic, such as the metal atoms zinc, iron, and copper in various oxidation states. Others, such as most vitamins, are organic.<p><a href='/help/cofactor' target='_top'>More...</a></p>Cofactori

Ca2+By similarityNote: Binds 1 Ca2+ ion. Required for its activity.By similarity

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section describes the metabolic pathway(s) associated with a protein.<p><a href='/help/pathway' target='_top'>More...</a></p>Pathwayi: pectin degradation

This protein is involved in step 2 of the subpathway that synthesizes 2-dehydro-3-deoxy-D-gluconate from pectin.
Proteins known to be involved in the 5 steps of the subpathway in this organism are:
  1. Probable pectinesterase 56 (PME56), Putative pectinesterase 11 (PME11), Pectinesterase PPME1 (PPME1), Putative pectinesterase/pectinesterase inhibitor 24 (PME24), Probable pectinesterase 30 (PME30), Probable pectinesterase/pectinesterase inhibitor 44 (PME44), Probable pectinesterase 48 (PME48), Putative pectinesterase 63 (PME63), Pectinesterase 4 (PME4), Probable pectinesterase 55 (PME55), Probable pectinesterase/pectinesterase inhibitor 58 (PME58), Probable pectinesterase 66 (PME66), Probable pectinesterase 67 (PME67), Probable pectinesterase/pectinesterase inhibitor 6 (PME6), Putative pectinesterase 10 (PME10), Probable pectinesterase/pectinesterase inhibitor 13 (PME13), Pectinesterase 2 (PME2), Probable pectinesterase/pectinesterase inhibitor 34 (PME34), Pectinesterase/pectinesterase inhibitor 3 (PME3), Putative pectinesterase/pectinesterase inhibitor 43 (PME43), Probable pectinesterase 50 (PME50), Probable pectinesterase/pectinesterase inhibitor 25 (PME25), Probable pectinesterase/pectinesterase inhibitor 33 (PME33), Probable pectinesterase/pectinesterase inhibitor 47 (PME47), Probable pectinesterase/pectinesterase inhibitor 64 (PME64), Probable pectinesterase/pectinesterase inhibitor 23 (PME23), Probable pectinesterase/pectinesterase inhibitor 35 (PME35), Probable pectinesterase/pectinesterase inhibitor 39 (PME39), Probable pectinesterase/pectinesterase inhibitor 40 (PME40), Putative pectinesterase 14 (PME14), Pectinesterase 1 (PME1), Probable pectinesterase/pectinesterase inhibitor 32 (PME32), Probable pectinesterase/pectinesterase inhibitor 51 (PME51), Putative pectinesterase/pectinesterase inhibitor 28 (PME28), Probable pectinesterase 29 (PME29), Pectinesterase 31 (PME31), Probable pectinesterase/pectinesterase inhibitor VGDH2 (VGDH2), Putative pectinesterase 52 (PME52), Putative pectinesterase 57 (PME57), Pectinesterase QRT1 (QRT1), Probable pectinesterase/pectinesterase inhibitor 36 (PME36), Putative pectinesterase/pectinesterase inhibitor 38 (PME38), Probable pectinesterase 53 (PME53), Probable pectinesterase/pectinesterase inhibitor 54 (PME54), Probable pectinesterase/pectinesterase inhibitor 59 (PME59), Pectinesterase 5 (PME5), Probable pectinesterase/pectinesterase inhibitor 61 (PME61), Probable pectinesterase/pectinesterase inhibitor 7 (PME7), Probable pectinesterase/pectinesterase inhibitor 12 (PME12), Probable pectinesterase/pectinesterase inhibitor 21 (PME21), Putative pectinesterase/pectinesterase inhibitor 45 (PME45), Probable pectinesterase 68 (PME68), Probable pectinesterase/pectinesterase inhibitor 17 (PME17), Pectinesterase/pectinesterase inhibitor 18 (PME18), Putative pectinesterase/pectinesterase inhibitor 22 (PME22), Probable pectinesterase/pectinesterase inhibitor 41 (PME41), Probable pectinesterase/pectinesterase inhibitor 42 (PME42), Probable pectinesterase/pectinesterase inhibitor 46 (PME46), Probable pectinesterase/pectinesterase inhibitor 60 (PME60), Probable pectinesterase 15 (PME15), Probable pectinesterase/pectinesterase inhibitor 16 (PME16), Probable pectinesterase 49 (PME49), Probable pectinesterase 8 (PME8), Probable pectinesterase/pectinesterase inhibitor 19 (PME19), Probable pectinesterase/pectinesterase inhibitor 20 (PME20), Putative pectinesterase/pectinesterase inhibitor 26 (PME26), Pectinesterase, Pectinesterase (AXX17_At4g02940), Pectinesterase (AXX17_At2g45340), Pectinesterase (AXX17_At5g50310), Pectinesterase (PMEPCRF), Pectinesterase (AXX17_At5g04420), Pectinesterase (AXX17_At3g10560), Pectinesterase (AXX17_At1g48290), Pectinesterase (AXX17_At5g47900), Pectinesterase (At1g53840), Pectinesterase (AXX17_At3g14900), Pectinesterase (AXX17_At3g56460), Plant invertase/pectin methylesterase inhibitor superfamily (At5g09760), Pectinesterase (AXX17_At2g22270), Pectinesterase (AXX17_At2g42790), Pectinesterase (AXX17_At2g33420), Pectinesterase (AXX17_At5g26780), Pectinesterase (At3g10720), Pectinesterase (AXX17_At4g02930), Pectinesterase (AXX17_At5g52320), Pectinesterase (AXX17_At4g02900), Pectinesterase (AXX17_At3g30550), Pectinesterase (AXX17_At3g55110), Pectinesterase (AXX17_At4g18720), Pectinesterase (AXX17_At1g24390), Pectinesterase (AXX17_At2g44780), Pectinesterase (PME44), Pectinesterase, Pectinesterase (AXX17_At4g38050), Pectinesterase (At4g15980), Pectinesterase (AXX17_At3g53530), Pectinesterase (AXX17_At3g06710), Pectinesterase (AXX17_At1g04730), Uncharacterized protein (AXX17_At3g05180), Pectinesterase, Pectinesterase (AXX17_At3g43380), Pectinesterase (PMEPCRA), Uncharacterized protein (AXX17_At5g64270), Pectinesterase (AXX17_At5g20800), Pectinesterase (AXX17_At3g26070), PME26 (AXX17_At3g14890), Pectinesterase (AXX17_At2g44790), Plant invertase/pectin methylesterase inhibitor superfamily (At3g49220), Pectinesterase (AXX17_At3g41380), Pectinesterase (At3g49220), Pectinesterase (At3g14310), Pectinesterase (AXX17_At1g11890), Pectinesterase (AXX17_At2g40510), Pectinesterase (AXX17_At4g00230), Pectinesterase (AXX17_At5g04430), Pectinesterase (AXX17_At5g50300), Uncharacterized protein (AXX17_At5g27870), Pectinesterase (AXX17_At3g31890), Pectinesterase (AXX17_At2g22280), Pectinesterase (F14I3.7), Pectinesterase (AXX17_At5g19650), Pectinesterase (AXX17_At1g48300), Uncharacterized protein (AXX17_At5g09310), Pectinesterase (At5g26810), Pectinesterase (AXX17_At1g11900), Pectinesterase (AXX17_At1g11920), Pectinesterase, Pectinesterase (AXX17_At5g45990), Pectinesterase (AXX17_At3g17940), Pectinesterase (AXX17_At2g33420), Pectinesterase (At5g20860), Pectinesterase (AXX17_At1g01970), Pectinesterase (AXX17_At4g06570), Pectinesterase (AXX17_At3g10570), Pectinesterase (AXX17_At3g05190), Pectinesterase (AXX17_At4g38040), Pectinesterase (AXX17_At3g36460)
  2. Probable pectate lyase 6 (At2g02720), Probable pectate lyase 9 (At3g24230), Putative pectate lyase 11 (At3g27400), Putative pectate lyase 2 (At1g11920), Probable pectate lyase 4 (At1g30350), Probable pectate lyase 5 (At1g67750), Probable pectate lyase 13 (PMR6), Probable pectate lyase 7 (At3g01270), Probable pectate lyase 12 (At3g53190), Probable pectate lyase 15 (At4g13710), Probable pectate lyase 3 (AT59), Probable pectate lyase 10 (At3g24670), Putative pectate lyase 14 (At4g13210), Probable pectate lyase 19 (At5g15110), Probable pectate lyase 1 (At1g04680), Probable pectate lyase 18 (At4g24780), Probable pectate lyase 20 (At5g48900), Probable pectate lyase 16 (At4g22080), Putative pectate lyase 21 (At5g55720), Probable pectate lyase 22 (At5g63180), Putative pectate lyase 17 (At4g22090), Probable pectate lyase 8 (At3g07010), Pectate lyase (AXX17_At4g25610), Pectate lyase (AXX17_At3g06910), Pectate lyase (AXX17_At2g01680), Pectate lyase (At3g07010), Pectate lyase (AXX17_At1g61710), Pectate lyase (AXX17_At5g03700), Pectate lyase (AXX17_At3g00310), Pectate lyase (AXX17_At3g26720), Pectate lyase (At4g13210), Pectate lyase (AXX17_At1g04020), Pectate lyase (At4g13710), Pectate lyase (AXX17_At4g14900), Pectate lyase, Pectate lyase (AXX17_At3g26200), Pectate lyase (At3g09540), Pectate lyase (AXX17_At4g15660), Pectate lyase, Pectate lyase (At3g27400), Pectate lyase (At3g53190), Pectate lyase (AXX17_At4g25600), Pectate lyase (AXX17_At3g49450), Pectate lyase (AXX17_At5g47570), Pectate lyase (AXX17_At3g09180), Pectate lyase (AXX17_At1g15010), Pectate lyase (At3g01270), Pectate lyase (T26I12.20), Pectate lyase (AXX17_At5g14600), Pectate lyase (AXX17_At3g49720), Pectate lyase (AXX17_At1g30780), Pectate lyase, Pectate lyase (At3g07010), Pectate lyase (At3g01270), Pectate lyase (At3g55140), Pectate lyase (AXX17_At5g62760), Pectate lyase (At3g07010), Pectate lyase (AXX17_At4g28670), Pectate lyase (At5g04310), Pectate lyase (AXX17_At1g12300), Pectate lyase, Pectate lyase (AXX17_At5g54880), Pectate lyase (AXX17_At3g29900), Pectate lyase (AXX17_At3g47590), Pectate lyase (AXX17_At5g08800), Pectate lyase (At3g55140), Pectate lyase (F11F8_12), Pectate lyase, Pectate lyase (At1g14420), Pectate lyase (At5g04310), Pectate lyase (At5g09280)
  3. no protein annotated in this organism
  4. no protein annotated in this organism
  5. no protein annotated in this organism
This subpathway is part of the pathway pectin degradation, which is itself part of Glycan metabolism.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes 2-dehydro-3-deoxy-D-gluconate from pectin, the pathway pectin degradation and in Glycan metabolism.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Function’ section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the ‘Description’ field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi206CalciumBy similarity1
Metal bindingi230CalciumBy similarity1
Metal bindingi234CalciumBy similarity1
<p>This subsection of the ‘Function’ section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei286Sequence analysis1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

  • pectin catabolic process Source: UniProtKB-UniPathway
  • response to nematode Source: TAIR

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionLyase
LigandCalcium, Metal-binding

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
ARA:AT4G24780-MONOMER

UniPathway: a resource for the exploration and annotation of metabolic pathways

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UniPathwayi
UPA00545;UER00824

Protein family/group databases

Carbohydrate-Active enZymes

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CAZyi
PL1 Polysaccharide Lyase Family 1

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Probable pectate lyase 18 (EC:4.2.2.2)
Alternative name(s):
Pectate lyase A10
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:At4g24780
ORF Names:F22K18.20
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 4

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT4G24780

The Arabidopsis Information Resource

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TAIRi
locus:2121914 AT4G24780

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 24Sequence analysisAdd BLAST24
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_000002488325 – 408Probable pectate lyase 18Add BLAST384

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section specifies the position and type of each covalently attached glycan group (mono-, di-, or polysaccharide).<p><a href='/help/carbohyd' target='_top'>More...</a></p>Glycosylationi42N-linked (GlcNAc...) asparagineSequence analysis1

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q9C5M8

PRoteomics IDEntifications database

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PRIDEi
Q9C5M8

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed in flowers, but not in leaves.1 Publication

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

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ExpressionAtlasi
Q9C5M8 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

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Genevisiblei
Q9C5M8 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

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BioGridi
13869, 2 interactors

STRING: functional protein association networks

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STRINGi
3702.AT4G24780.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

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ProteinModelPortali
Q9C5M8

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q9C5M8

Database of comparative protein structure models

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ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the polysaccharide lyase 1 family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG410IPFF Eukaryota
COG3866 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

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HOGENOMi
HOG000237948

InParanoid: Eukaryotic Ortholog Groups

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InParanoidi
Q9C5M8

KEGG Orthology (KO)

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KOi
K01728

Identification of Orthologs from Complete Genome Data

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OMAi
AGAHNCK

Database of Orthologous Groups

More...
OrthoDBi
924221at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q9C5M8

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

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Gene3Di
2.160.20.10, 1 hit

Integrated resource of protein families, domains and functional sites

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InterProi
View protein in InterPro
IPR018082 AmbAllergen
IPR002022 Pec_lyase
IPR012334 Pectin_lyas_fold
IPR011050 Pectin_lyase_fold/virulence

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00544 Pec_lyase_C, 1 hit

Protein Motif fingerprint database; a protein domain database

More...
PRINTSi
PR00807 AMBALLERGEN

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00656 Amb_all, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF51126 SSF51126, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

Q9C5M8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKMQTKKLFI TIVSFLLYAP LFLSSPVPDP ESVVEEVHKS INASVAGRRK
60 70 80 90 100
LGYLSCTTGN PIDDCWRCDP HWEQHRQRLA DCAIGFGKNA IGGRDGRIYV
110 120 130 140 150
VTDSGNDNPV SPKPGTLRHA VVQDEPLWII FQRDMTIQLK EELIMNSFKT
160 170 180 190 200
IDGRGASVHI SGGPCITIQY VTNIIIHGIH IHDCKQGGNA MVRSSPRHFG
210 220 230 240 250
WRTISDGDGV SIFGGSHVWV DHCSFSNCED GLIDAIMGST AITLSNNHMT
260 270 280 290 300
HHDKVMLLGH SDTYSRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
310 320 330 340 350
DYTHWEMYAI GGSANPTINS QGNRFLAPNI RFSKEVTKHE DAPESEWKRW
360 370 380 390 400
NWRSSGDLLL NGAFFTPSGG AASSSYAKAS SLGAKPSSLV GPLTSTSGAL

NCRKGSRC
Length:408
Mass (Da):45,014
Last modified:June 16, 2003 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i4117CB52C48E588C
GO

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAM65103 differs from that shown. Reason: Erroneous initiation.Curated
The sequence CAA22985 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence CAB79388 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti107D → Y in AAM65103 (Ref. 4) Curated1
Sequence conflicti252H → R in AAB69761 (PubMed:9278171).Curated1
Sequence conflicti271Q → H in AAK25850 (PubMed:14593172).Curated1
Sequence conflicti339H → D in AAM65103 (Ref. 4) Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
AL035356 Genomic DNA Translation: CAA22985.1 Sequence problems.
AL161562 Genomic DNA Translation: CAB79388.1 Sequence problems.
CP002687 Genomic DNA Translation: AEE84955.1
CP002687 Genomic DNA Translation: AEE84956.1
AF360140 mRNA Translation: AAK25850.1
AY087561 mRNA Translation: AAM65103.1 Different initiation.
U83621 Genomic DNA Translation: AAB69761.1

Protein sequence database of the Protein Information Resource

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PIRi
T05556

NCBI Reference Sequences

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RefSeqi
NP_001190827.1, NM_001203898.1
NP_567707.1, NM_118611.3

UniGene gene-oriented nucleotide sequence clusters

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UniGenei
At.23543

Genome annotation databases

Ensembl plant genome annotation project

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EnsemblPlantsi
AT4G24780.1; AT4G24780.1; AT4G24780
AT4G24780.2; AT4G24780.2; AT4G24780

Database of genes from NCBI RefSeq genomes

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GeneIDi
828580

Gramene; a comparative resource for plants

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Gramenei
AT4G24780.1; AT4G24780.1; AT4G24780
AT4G24780.2; AT4G24780.2; AT4G24780

KEGG: Kyoto Encyclopedia of Genes and Genomes

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KEGGi
ath:AT4G24780

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL035356 Genomic DNA Translation: CAA22985.1 Sequence problems.
AL161562 Genomic DNA Translation: CAB79388.1 Sequence problems.
CP002687 Genomic DNA Translation: AEE84955.1
CP002687 Genomic DNA Translation: AEE84956.1
AF360140 mRNA Translation: AAK25850.1
AY087561 mRNA Translation: AAM65103.1 Different initiation.
U83621 Genomic DNA Translation: AAB69761.1
PIRiT05556
RefSeqiNP_001190827.1, NM_001203898.1
NP_567707.1, NM_118611.3
UniGeneiAt.23543

3D structure databases

ProteinModelPortaliQ9C5M8
SMRiQ9C5M8
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi13869, 2 interactors
STRINGi3702.AT4G24780.1

Protein family/group databases

CAZyiPL1 Polysaccharide Lyase Family 1

Proteomic databases

PaxDbiQ9C5M8
PRIDEiQ9C5M8

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G24780.1; AT4G24780.1; AT4G24780
AT4G24780.2; AT4G24780.2; AT4G24780
GeneIDi828580
GrameneiAT4G24780.1; AT4G24780.1; AT4G24780
AT4G24780.2; AT4G24780.2; AT4G24780
KEGGiath:AT4G24780

Organism-specific databases

AraportiAT4G24780
TAIRilocus:2121914 AT4G24780

Phylogenomic databases

eggNOGiENOG410IPFF Eukaryota
COG3866 LUCA
HOGENOMiHOG000237948
InParanoidiQ9C5M8
KOiK01728
OMAiAGAHNCK
OrthoDBi924221at2759
PhylomeDBiQ9C5M8

Enzyme and pathway databases

UniPathwayi
UPA00545;UER00824

BioCyciARA:AT4G24780-MONOMER

Miscellaneous databases

Protein Ontology

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PROi
PR:Q9C5M8

Gene expression databases

ExpressionAtlasiQ9C5M8 baseline and differential
GenevisibleiQ9C5M8 AT

Family and domain databases

Gene3Di2.160.20.10, 1 hit
InterProiView protein in InterPro
IPR018082 AmbAllergen
IPR002022 Pec_lyase
IPR012334 Pectin_lyas_fold
IPR011050 Pectin_lyase_fold/virulence
PfamiView protein in Pfam
PF00544 Pec_lyase_C, 1 hit
PRINTSiPR00807 AMBALLERGEN
SMARTiView protein in SMART
SM00656 Amb_all, 1 hit
SUPFAMiSSF51126 SSF51126, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPLY18_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9C5M8
Secondary accession number(s): O23667, Q8LAW7, Q9SB71
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 16, 2003
Last sequence update: June 16, 2003
Last modified: January 16, 2019
This is version 130 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  3. PATHWAY comments
    Index of metabolic and biosynthesis pathways
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