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UniProtKB - Q9C5M7 (Q9C5M7_ARATH)
Protein
Submitted name:
Spliceosome protein-like protein
Gene
At1g54380
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Functioni
GO - Biological processi
- alternative mRNA splicing, via spliceosome Source: TAIR
- cellular response to cold Source: TAIR
- spliceosomal snRNP assembly Source: TAIR
Names & Taxonomyi
Protein namesi | Submitted name: Spliceosome protein-like proteinImportedSubmitted name: Uncharacterized protein At1g54380Imported |
Gene namesi | Ordered Locus Names:At1g54380Imported ORF Names:F20D21.20Imported, F20D21_20Imported |
Organismi | Arabidopsis thaliana (Mouse-ear cress)Imported |
Taxonomic identifieri | 3702 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis |
Proteomesi |
|
Organism-specific databases
TAIRi | locus:2020028, AT1G54380 |
Structurei
Family & Domainsi
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 1 – 77 | DisorderedSequence analysisAdd BLAST | 77 | |
Regioni | 248 – 277 | DisorderedSequence analysisAdd BLAST | 30 |
Coiled coil
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Coiled coili | 87 – 112 | Sequence analysisAdd BLAST | 26 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 33 – 52 | Polar residuesSequence analysisAdd BLAST | 20 | |
Compositional biasi | 263 – 277 | Acidic residuesSequence analysisAdd BLAST | 15 |
Keywords - Domaini
Coiled coilSequence analysisPhylogenomic databases
eggNOGi | ENOG502QPK4, Eukaryota |
HOGENOMi | CLU_027828_1_0_1 |
OMAi | QEANECC |
OrthoDBi | 1235594at2759 |
Family and domain databases
InterProi | View protein in InterPro IPR035426, Gemin2/Brr1 |
Pfami | View protein in Pfam PF04938, SIP1, 1 hit |
i Sequence
Sequence statusi: Complete.
Q9C5M7-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MMTNSDSDHC TPAKTSISGD GLEKESDFKK QLNSEIDPQA SSSQNDAITM
60 70 80 90 100
EDGAVSVNNR DLQEIKESSF SKGSEQYRVD GALEESLNFE EKEQESEAQR
110 120 130 140 150
LLEAEKRRLL AEIELGSIFR KSVDVDTLPK IEETMDNDVD KIELVDHTAL
160 170 180 190 200
VDVVHHPKRP GTAQNEKDTP RKLKKIGDKR NVIEGSGVEN NGKQFRRLYT
210 220 230 240 250
RKQLESMRFA HIVNQKNLWS EMYSRILPEV VTEYESLVYV KNYKSSKSNR
260 270 280 290 300
VRGRTESGNE ENLGTEEGTE DPEDYTDDND DYNSILRPAF EVDGEPDFST
310 320 330 340 350
GPPEDGLEYL RRVRWEAKGI PNVRVAKIDE STYIKKEQSV YMPLIPEIPK
360 370 380 390 400
CPEYLLPMKE WEDSLLLDFV HLRQTLTQSA NSCEDEIISS QCVEDLLVEM
410 420 430 440 450
FNKHLHTEED ESFGEVVTDI QGMDSVTRVS KLKKRICLVE KESGLQSSDC
460 470 480 490 500
KWVVALCASL ETPLDADTCA CLRGLLRKCA SVRAETSLEV GDEEVITMAN
510
MLITIAGRYF GQMGQ
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AF360141 mRNA Translation: AAK25851.1 AY039993 mRNA Translation: AAK64070.1 CP002684 Genomic DNA Translation: AEE33090.1 |
RefSeqi | NP_564657.1, NM_104316.3 |
Genome annotation databases
EnsemblPlantsi | AT1G54380.1; AT1G54380.1; AT1G54380 |
GeneIDi | 841879 |
Gramenei | AT1G54380.1; AT1G54380.1; AT1G54380 |
KEGGi | ath:AT1G54380 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AF360141 mRNA Translation: AAK25851.1 AY039993 mRNA Translation: AAK64070.1 CP002684 Genomic DNA Translation: AEE33090.1 |
RefSeqi | NP_564657.1, NM_104316.3 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
STRINGi | 3702.AT1G54380.1 |
Proteomic databases
ProteomicsDBi | 185327 |
Genome annotation databases
EnsemblPlantsi | AT1G54380.1; AT1G54380.1; AT1G54380 |
GeneIDi | 841879 |
Gramenei | AT1G54380.1; AT1G54380.1; AT1G54380 |
KEGGi | ath:AT1G54380 |
Organism-specific databases
TAIRi | locus:2020028, AT1G54380 |
Phylogenomic databases
eggNOGi | ENOG502QPK4, Eukaryota |
HOGENOMi | CLU_027828_1_0_1 |
OMAi | QEANECC |
OrthoDBi | 1235594at2759 |
Miscellaneous databases
PROi | PR:Q9C5M7 |
Family and domain databases
InterProi | View protein in InterPro IPR035426, Gemin2/Brr1 |
Pfami | View protein in Pfam PF04938, SIP1, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | Q9C5M7_ARATH | |
Accessioni | Q9C5M7Primary (citable) accession number: Q9C5M7 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | June 1, 2001 |
Last sequence update: | June 1, 2001 | |
Last modified: | January 19, 2022 | |
This is version 126 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |