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UniProtKB - Q9BYV7 (BCDO2_HUMAN)

Entry version 154 (07 Oct 2020)
Sequence version 5 (05 Oct 2010)
Previous versions | rss
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Protein

Beta,beta-carotene 9',10'-oxygenase

Gene

BCO2

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Asymmetrically cleaves beta-carotene at the 9',10' double bond resulting in the formation of beta-apo-10'-carotenal and beta-ionone. Besides beta-carotene, lycopene is also oxidatively cleaved. The apocarotenals formed by this enzyme may be the precursors for the biosynthesis of retinoic acid or exert unknown physiological effects.1 Publication

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>This subsection of the 'Function' section provides information relevant to cofactors. A cofactor is any non-protein substance required for a protein to be catalytically active. Some cofactors are inorganic, such as the metal atoms zinc, iron, and copper in various oxidation states. Others, such as most vitamins, are organic.<p><a href='/help/cofactor' target='_top'>More...</a></p>Cofactori

Fe2+By similarityNote: Binds 1 Fe2+ ion per subunit.By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the 'Description' field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi226Iron; catalyticBy similarity1
Metal bindingi286Iron; catalyticBy similarity1
Metal bindingi357Iron; catalyticBy similarity1
Metal bindingi573Iron; catalyticBy similarity1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDioxygenase, Oxidoreductase
LigandIron, Metal-binding

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...BioCyci		MetaCyc:G66-33846-MONOMER

BRENDA Comprehensive Enzyme Information System

More...BRENDAi		1.13.11.71, 2681

Pathway Commons web resource for biological pathway data

More...PathwayCommonsi		Q9BYV7

Reactome - a knowledgebase of biological pathways and processes

More...Reactomei		R-HSA-975634, Retinoid metabolism and transport

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Beta,beta-carotene 9',10'-oxygenase (EC:1.13.11.71)
Alternative name(s):
B-diox-II
Beta-carotene dioxygenase 2
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:BCO2
Synonyms:BCDO2
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHomo sapiens (Human)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9606 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000005640 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 11

Organism-specific databases

Eukaryotic Pathogen Database Resources

More...EuPathDBi		HostDB:ENSG00000197580.11

Human Gene Nomenclature Database

More...HGNCi		HGNC:18503, BCO2

Online Mendelian Inheritance in Man (OMIM)

More...MIMi		611740, gene

neXtProt; the human protein knowledge platform

More...neXtProti		NX_Q9BYV7

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Mitochondrion

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Organism-specific databases

DisGeNET

More...DisGeNETi		83875

Open Targets

More...OpenTargetsi		ENSG00000197580

The Pharmacogenetics and Pharmacogenomics Knowledge Base

More...PharmGKBi		PA162377424

Miscellaneous databases

Pharos NIH Druggable Genome Knowledgebase

More...Pharosi		Q9BYV7, Tbio

Polymorphism and mutation databases

BioMuta curated single-nucleotide variation and disease association database

More...BioMutai		BCO2

Domain mapping of disease mutations (DMDM)

More...DMDMi		308153680

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001439371 – 579Beta,beta-carotene 9',10'-oxygenaseAdd BLAST579

Proteomic databases

MassIVE - Mass Spectrometry Interactive Virtual Environment

More...MassIVEi		Q9BYV7

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		Q9BYV7

PeptideAtlas

More...PeptideAtlasi		Q9BYV7

PRoteomics IDEntifications database

More...PRIDEi		Q9BYV7

ProteomicsDB: a multi-organism proteome resource

More...ProteomicsDBi		19234
21156
79718 [Q9BYV7-1]
79719 [Q9BYV7-2]
79720 [Q9BYV7-4]

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...iPTMneti		Q9BYV7

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...PhosphoSitePlusi		Q9BYV7

SwissPalm database of S-palmitoylation events

More...SwissPalmi		Q9BYV7

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the 'Expression' section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified 'at protein level'.<br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Highly expressed in retinal pigment epithelium. Also expressed in stomach, small intestine, liver, testis, kidney, adrenal gland, pancreas, heart, skeletal muscle and prostate (at protein level).1 Publication

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...Bgeei		ENSG00000197580, Expressed in right adrenal gland and 173 other tissues

ExpressionAtlas, Differential and Baseline Expression

More...ExpressionAtlasi		Q9BYV7, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...Genevisiblei		Q9BYV7, HS

Organism-specific databases

Human Protein Atlas

More...HPAi		ENSG00000197580, Tissue enhanced (heart muscle, liver)

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		9606.ENSP00000350314

Miscellaneous databases

RNAct, Protein-RNA interaction predictions for model organisms.

More...RNActi		Q9BYV7, protein

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		Q9BYV7

Database of comparative protein structure models

More...ModBasei		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the carotenoid oxygenase family.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		KOG1285, Eukaryota

Ensembl GeneTree

More...GeneTreei		ENSGT00950000182913

KEGG Orthology (KO)

More...KOi		K10252

Identification of Orthologs from Complete Genome Data

More...OMAi		HHIPYGL

Database of Orthologous Groups

More...OrthoDBi		895046at2759

Database for complete collections of gene phylogenies

More...PhylomeDBi		Q9BYV7

TreeFam database of animal gene trees

More...TreeFami		TF314019

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR004294, Carotenoid_Oase

The PANTHER Classification System

More...PANTHERi		PTHR10543, PTHR10543, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF03055, RPE65, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (5+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 5 <p>This subsection of the 'Sequence' section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform. This section is only present in reviewed entries, i.e. in UniProtKB/Swiss-Prot.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 5 described isoforms and 5 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: Q9BYV7-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MFFRVFLHFI RSHSATAVDF LPVMVHRLPV FKRYMGNTPQ KKAVFGQCRG 
        60         70         80         90        100
LPCVAPLLTT VEEAPRGISA RVWGHFPKWL NGSLLRIGPG KFEFGKDKYN 
       110        120        130        140        150
HWFDGMALLH QFRMAKGTVT YRSKFLQSDT YKANSAKNRI VISEFGTLAL 
       160        170        180        190        200
PDPCKNVFER FMSRFELPGK AAAMTDNTNV NYVRYKGDYY LCTETNFMNK 
       210        220        230        240        250
VDIETLEKTE KVDWSKFIAV NGATAHPHYD LDGTAYNMGN SFGPYGFSYK 
       260        270        280        290        300
VIRVPPEKVD LGETIHGVQV ICSIASTEKG KPSYYHSFGM TRNYIIFIEQ 
       310        320        330        340        350
PLKMNLWKIA TSKIRGKAFS DGISWEPQCN TRFHVVEKRT GQLLPGRYYS 
       360        370        380        390        400
KPFVTFHQIN AFEDQGCVII DLCCQDNGRT LEVYQLQNLR KAGEGLDQVH 
       410        420        430        440        450
NSAAKSFPRR FVLPLNVSLN APEGDNLSPL SYTSASAVKQ ADGTIWCSHE 
       460        470        480        490        500
NLHQEDLEKE GGIEFPQIYY DRFSGKKYHF FYGCGFRHLV GDSLIKVDVV 
       510        520        530        540        550
NKTLKVWRED GFYPSEPVFV PAPGTNEEDG GVILSVVITP NQNESNFILV 
       560        570 
LDAKNFEELG RAEVPVQMPY GFHGTFIPI
Length:579
Mass (Da):65,674
Last modified:October 5, 2010 - v5
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iB14F54FCEC1092CE
GO
Isoform 2 (identifier: Q9BYV7-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-34: Missing.

Show »
Length:545
Mass (Da):61,526
Checksum:iE09F77FEBB534B65
GO
Isoform 4 (identifier: Q9BYV7-4) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-34: Missing.
     501-506: Missing.

Show »
Length:539
Mass (Da):60,842
Checksum:iDD12ACD19DD37669
GO
Isoform 5 (identifier: Q9BYV7-5) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     173-245: Missing.

Show »
Length:506
Mass (Da):57,337
Checksum:i4E62A2574461C1D4
GO
Isoform 6 (identifier: Q9BYV7-6) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-105: Missing.

Show »
Length:474
Mass (Da):53,630
Checksum:i3C3EA5F8FFB9CFA0
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 5 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
E9PS89E9PS89_HUMAN
Beta,beta-carotene 9',10'-oxygenase
BCO2
98Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
H0YCN8H0YCN8_HUMAN
Beta,beta-carotene 9',10'-oxygenase
BCO2
273Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
V9GYA9V9GYA9_HUMAN
Beta,beta-carotene 9',10'-oxygenase
BCO2
212Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
E9PPP9E9PPP9_HUMAN
Beta,beta-carotene 9',10'-oxygenase
BCO2
50Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
H0YCL7H0YCL7_HUMAN
Beta,beta-carotene 9',10'-oxygenase
BCO2
71Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence CAC27994 differs from that shown. Reason: Erroneous initiation. Truncated N-terminus.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti26H → Y in CAC27994 (PubMed:11278918).Curated1
Sequence conflicti177N → D in CAC27994 (PubMed:11278918).Curated1
Sequence conflicti258K → E in CAC27994 (PubMed:11278918).Curated1
Sequence conflicti429P → Q in BAG60185 (PubMed:14702039).Curated1
Sequence conflicti446W → C in CAC27994 (PubMed:11278918).Curated1

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes natural variant(s) of the protein sequence.<p><a href='/help/variant' target='_top'>More...</a></p>Natural variantiVAR_047047231L → P3 PublicationsCorresponds to variant dbSNP:rs10891338Ensembl.1
Natural variantiVAR_047048289G → E. Corresponds to variant dbSNP:rs17113607Ensembl.1
Natural variantiVAR_047049548I → L5 PublicationsCorresponds to variant dbSNP:rs2217401Ensembl.1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0469151 – 105Missing in isoform 6. 1 PublicationAdd BLAST105
Alternative sequenceiVSP_0085991 – 34Missing in isoform 2 and isoform 4. 2 PublicationsAdd BLAST34
Alternative sequenceiVSP_046916173 – 245Missing in isoform 5. 1 PublicationAdd BLAST73
Alternative sequenceiVSP_008600501 – 506Missing in isoform 4. 1 Publication6

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AF276432 mRNA Translation: AAK69433.1
AK027801 mRNA Translation: BAB55379.1
AK297853 mRNA Translation: BAG60185.1
EF444956 Genomic DNA Translation: ACA05952.1
AP002884 Genomic DNA No translation available.
CH471065 Genomic DNA Translation: EAW67192.1
BC041656 mRNA Translation: AAH41656.2
AJ290393 mRNA Translation: CAC27994.1 Different initiation.

The Consensus CDS (CCDS) project

More...CCDSi		CCDS41716.1 [Q9BYV7-2]
CCDS58181.1 [Q9BYV7-5]
CCDS58182.1 [Q9BYV7-4]
CCDS58183.1 [Q9BYV7-6]
CCDS8358.2 [Q9BYV7-1]

NCBI Reference Sequences

More...RefSeqi		NP_001032367.2, NM_001037290.2 [Q9BYV7-2]
NP_001243326.1, NM_001256397.1 [Q9BYV7-4]
NP_001243327.1, NM_001256398.1 [Q9BYV7-5]
NP_001243329.1, NM_001256400.1 [Q9BYV7-6]
NP_114144.4, NM_031938.5 [Q9BYV7-1]

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...Ensembli		ENST00000357685; ENSP00000350314; ENSG00000197580 [Q9BYV7-1]
ENST00000361053; ENSP00000354338; ENSG00000197580 [Q9BYV7-5]
ENST00000438022; ENSP00000414843; ENSG00000197580 [Q9BYV7-2]
ENST00000526088; ENSP00000436615; ENSG00000197580 [Q9BYV7-4]
ENST00000531169; ENSP00000437053; ENSG00000197580 [Q9BYV7-2]
ENST00000532593; ENSP00000431802; ENSG00000197580 [Q9BYV7-6]

Database of genes from NCBI RefSeq genomes

More...GeneIDi		83875

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		hsa:83875

UCSC genome browser

More...UCSCi		uc001pnf.4, human [Q9BYV7-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF276432 mRNA Translation: AAK69433.1
AK027801 mRNA Translation: BAB55379.1
AK297853 mRNA Translation: BAG60185.1
EF444956 Genomic DNA Translation: ACA05952.1
AP002884 Genomic DNA No translation available.
CH471065 Genomic DNA Translation: EAW67192.1
BC041656 mRNA Translation: AAH41656.2
AJ290393 mRNA Translation: CAC27994.1 Different initiation.
CCDSiCCDS41716.1 [Q9BYV7-2]
CCDS58181.1 [Q9BYV7-5]
CCDS58182.1 [Q9BYV7-4]
CCDS58183.1 [Q9BYV7-6]
CCDS8358.2 [Q9BYV7-1]
RefSeqiNP_001032367.2, NM_001037290.2 [Q9BYV7-2]
NP_001243326.1, NM_001256397.1 [Q9BYV7-4]
NP_001243327.1, NM_001256398.1 [Q9BYV7-5]
NP_001243329.1, NM_001256400.1 [Q9BYV7-6]
NP_114144.4, NM_031938.5 [Q9BYV7-1]

3D structure databases

SMRiQ9BYV7
ModBaseiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000350314

PTM databases

iPTMnetiQ9BYV7
PhosphoSitePlusiQ9BYV7
SwissPalmiQ9BYV7

Polymorphism and mutation databases

BioMutaiBCO2
DMDMi308153680

Proteomic databases

MassIVEiQ9BYV7
PaxDbiQ9BYV7
PeptideAtlasiQ9BYV7
PRIDEiQ9BYV7
ProteomicsDBi19234
21156
79718 [Q9BYV7-1]
79719 [Q9BYV7-2]
79720 [Q9BYV7-4]

Protocols and materials databases

Antibodypedia a portal for validated antibodies

More...Antibodypediai		45628, 114 antibodies

Genome annotation databases

EnsembliENST00000357685; ENSP00000350314; ENSG00000197580 [Q9BYV7-1]
ENST00000361053; ENSP00000354338; ENSG00000197580 [Q9BYV7-5]
ENST00000438022; ENSP00000414843; ENSG00000197580 [Q9BYV7-2]
ENST00000526088; ENSP00000436615; ENSG00000197580 [Q9BYV7-4]
ENST00000531169; ENSP00000437053; ENSG00000197580 [Q9BYV7-2]
ENST00000532593; ENSP00000431802; ENSG00000197580 [Q9BYV7-6]
GeneIDi83875
KEGGihsa:83875
UCSCiuc001pnf.4, human [Q9BYV7-1]

Organism-specific databases

Comparative Toxicogenomics Database

More...CTDi		83875
DisGeNETi83875
EuPathDBiHostDB:ENSG00000197580.11

GeneCards: human genes, protein and diseases

More...GeneCardsi		BCO2
HGNCiHGNC:18503, BCO2
HPAiENSG00000197580, Tissue enhanced (heart muscle, liver)
MIMi611740, gene
neXtProtiNX_Q9BYV7
OpenTargetsiENSG00000197580
PharmGKBiPA162377424

GenAtlas: human gene database

More...GenAtlasi		Search...

Phylogenomic databases

eggNOGiKOG1285, Eukaryota
GeneTreeiENSGT00950000182913
KOiK10252
OMAiHHIPYGL
OrthoDBi895046at2759
PhylomeDBiQ9BYV7
TreeFamiTF314019

Enzyme and pathway databases

BioCyciMetaCyc:G66-33846-MONOMER
BRENDAi1.13.11.71, 2681
PathwayCommonsiQ9BYV7
ReactomeiR-HSA-975634, Retinoid metabolism and transport

Miscellaneous databases

BioGRID ORCS database of CRISPR phenotype screens

More...BioGRID-ORCSi		83875, 2 hits in 873 CRISPR screens

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...ChiTaRSi		BCO2, human

Database of phenotypes from RNA interference screens in Drosophila and Homo sapiens

More...GenomeRNAii		83875
PharosiQ9BYV7, Tbio

Protein Ontology

More...PROi		PR:Q9BYV7
RNActiQ9BYV7, protein

The Stanford Online Universal Resource for Clones and ESTs

More...SOURCEi		Search...

Gene expression databases

BgeeiENSG00000197580, Expressed in right adrenal gland and 173 other tissues
ExpressionAtlasiQ9BYV7, baseline and differential
GenevisibleiQ9BYV7, HS

Family and domain databases

InterProiView protein in InterPro
IPR004294, Carotenoid_Oase
PANTHERiPTHR10543, PTHR10543, 1 hit
PfamiView protein in Pfam
PF03055, RPE65, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiBCDO2_HUMAN
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9BYV7
Secondary accession number(s): B0YIX5
, B4DNC3, E9PBI8, E9PJJ1, Q8IUS0, Q96JC8, Q96JY5
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 10, 2003
Last sequence update: October 5, 2010
Last modified: October 7, 2020
This is version 154 of the entry and version 5 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Human chromosome 11
    Human chromosome 11: entries, gene names and cross-references to MIM
  2. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  3. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  4. SIMILARITY comments
    Index of protein domains and families
  5. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
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