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UniProtKB - Q9BYV2 (TRI54_HUMAN)

Entry version 156 (03 Jul 2019)
Sequence version 3 (14 Oct 2008)
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Protein

Tripartite motif-containing protein 54

Gene

TRIM54

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

May bind and stabilize microtubules during myotubes formation.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section specifies the position(s) and type(s) of zinc fingers within the protein.<p><a href='/help/zn_fing' target='_top'>More...</a></p>Zinc fingeri26 – 82RING-typePROSITE-ProRule annotationAdd BLAST57
Zinc fingeri121 – 163B box-typePROSITE-ProRule annotationAdd BLAST43

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDevelopmental protein
Biological processDifferentiation
LigandMetal-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Tripartite motif-containing protein 54
Alternative name(s):
Muscle-specific RING finger protein
Short name:
MuRF
Muscle-specific RING finger protein 3
Short name:
MuRF-3
Short name:
MuRF3
RING finger protein 30
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:TRIM54
Synonyms:MURF, MURF3, RNF30
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHomo sapiens (Human)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9606 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000005640 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 2

Organism-specific databases

Human Gene Nomenclature Database

More...HGNCi		HGNC:16008 TRIM54

Online Mendelian Inheritance in Man (OMIM)

More...MIMi		606474 gene

neXtProt; the human protein knowledge platform

More...neXtProti		NX_Q9BYV2

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Cytoskeleton, Microtubule

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Organism-specific databases

DisGeNET

More...DisGeNETi		57159

Open Targets

More...OpenTargetsi		ENSG00000138100

The Pharmacogenetics and Pharmacogenomics Knowledge Base

More...PharmGKBi		PA34434

Polymorphism and mutation databases

BioMuta curated single-nucleotide variation and disease association database

More...BioMutai		TRIM54

Domain mapping of disease mutations (DMDM)

More...DMDMi		209572715

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00000562821 – 358Tripartite motif-containing protein 54Add BLAST358

Proteomic databases

Encyclopedia of Proteome Dynamics

More...EPDi		Q9BYV2

jPOST - Japan Proteome Standard Repository/Database

More...jPOSTi		Q9BYV2

MaxQB - The MaxQuant DataBase

More...MaxQBi		Q9BYV2

PeptideAtlas

More...PeptideAtlasi		Q9BYV2

PRoteomics IDEntifications database

More...PRIDEi		Q9BYV2

ProteomicsDB human proteome resource

More...ProteomicsDBi		79712
79713 [Q9BYV2-2]

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...iPTMneti		Q9BYV2

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...PhosphoSitePlusi		Q9BYV2

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Specifically expressed in heart and skeletal muscle.1 Publication

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...Bgeei		ENSG00000138100 Expressed in 101 organ(s), highest expression level in apex of heart

Genevisible search portal to normalized and curated expression data from Genevestigator

More...Genevisiblei		Q9BYV2 HS

Organism-specific databases

Human Protein Atlas

More...HPAi		HPA019690

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Homooligomer and heterooligomer.

Interacts with tubulin (By similarity).

Interacts with TRIM63 and probably with TRIM55.

By similarity2 Publications

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction_section%27">Interaction</a> section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="http://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated on a monthly basis. Each binary interaction is displayed on a separate line.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

WithEntry#Exp.IntActNotes
A8K2R33EBI-2130429,EBI-9977437
Q9BRL53EBI-2130429,EBI-10296986
ADCY4Q8NFM43EBI-2130429,EBI-2838710
ARFIP2P533653EBI-2130429,EBI-638194
ARHGEF5Q127745EBI-2130429,EBI-602199
BYSLQ138956EBI-2130429,EBI-358049
C12orf49Q9H7413EBI-2130429,EBI-2836158
C1orf109Q9NX045EBI-2130429,EBI-8643161
C1orf216Q8TAB53EBI-2130429,EBI-747505
C1QTNF2Q9BXJ53EBI-2130429,EBI-2817707
C2CD6Q53TS83EBI-2130429,EBI-739879
CARD9Q9H2573EBI-2130429,EBI-751319
CCDC102BQ68D865EBI-2130429,EBI-10171570
CCDC146Q8IYE0-23EBI-2130429,EBI-10247802
CCDC28AQ7Z6N93EBI-2130429,EBI-10258115
CCDC28AQ8IWP93EBI-2130429,EBI-355471
CCDC87Q9NVE43EBI-2130429,EBI-749261
CDK18Q070023EBI-2130429,EBI-746238
CDKN1AP389365EBI-2130429,EBI-375077
CENPXA8MT693EBI-2130429,EBI-5529694
CEP57L1Q8IYX8-23EBI-2130429,EBI-10181988
CHCHD2Q9Y6H13EBI-2130429,EBI-2321769
CRADDP785603EBI-2130429,EBI-520375
CWF19L2Q2TBE05EBI-2130429,EBI-5453285
CYTH4Q8WWE83EBI-2130429,EBI-10277443
DCUN1D1Q96GG93EBI-2130429,EBI-740086
DEUP1Q05D606EBI-2130429,EBI-748597
DNAL4O960153EBI-2130429,EBI-742362
DTX2Q86UW98EBI-2130429,EBI-740376
EHHADHQ084263EBI-2130429,EBI-2339219
EIF4E2O605733EBI-2130429,EBI-398610
ELMO1Q925563EBI-2130429,EBI-346417
ELOAQ142413EBI-2130429,EBI-742350
ENKD1Q9H0I25EBI-2130429,EBI-744099
EPM2AIP1Q7L7755EBI-2130429,EBI-6255981
EXOSC5Q9NQT45EBI-2130429,EBI-371876
FAM110AQ9BQ895EBI-2130429,EBI-1752811
FAM124AQ86V423EBI-2130429,EBI-744506
FAM124BQ9H5Z63EBI-2130429,EBI-741626
FAM161AQ3B8205EBI-2130429,EBI-719941
FARS2O953633EBI-2130429,EBI-2513774
FBF1Q8TES7-63EBI-2130429,EBI-10244131
FLJ13057Q53SE73EBI-2130429,EBI-10172181
GEMP550403EBI-2130429,EBI-744104
GTF2IRD2Q86UP83EBI-2130429,EBI-6425928
HAUS1Q96CS23EBI-2130429,EBI-2514791
ING3A0A0C4DG383EBI-2130429,EBI-10263367
INPP5JQ157355EBI-2130429,EBI-10236940
IQUBQ8NA543EBI-2130429,EBI-10220600
KIFC3Q9BVG83EBI-2130429,EBI-2125614
KLHL38Q2WGJ65EBI-2130429,EBI-6426443
KPNA2P522923EBI-2130429,EBI-349938
KRT6AP025389EBI-2130429,EBI-702198
KRT6BP042595EBI-2130429,EBI-740907
KRT6CP486685EBI-2130429,EBI-2564105
LENG1Q96BZ85EBI-2130429,EBI-726510
LIN37Q96GY33EBI-2130429,EBI-748884
LMO2P257913EBI-2130429,EBI-739696
LNX1Q8TBB15EBI-2130429,EBI-739832
LSM2Q9Y3333EBI-2130429,EBI-347416
MBD3O959833EBI-2130429,EBI-1783068
MCM7P339933EBI-2130429,EBI-355924
MEAF6Q9HAF13EBI-2130429,EBI-399266
MFAP1P550815EBI-2130429,EBI-1048159
MID2Q9UJV3-25EBI-2130429,EBI-10172526
MYO5BQ9ULV03EBI-2130429,EBI-311356
NGLY1Q96IV05EBI-2130429,EBI-6165879
OSTF1Q928823EBI-2130429,EBI-1051152
OTUB2Q96DC93EBI-2130429,EBI-746259
PIK3R3Q8N3813EBI-2130429,EBI-749096
PPP1R18Q6NYC85EBI-2130429,EBI-2557469
RABGEF1Q9UJ413EBI-2130429,EBI-913954
RAD23AP547253EBI-2130429,EBI-746453
RBM41Q96IZ53EBI-2130429,EBI-740773
RCOR3Q9P2K33EBI-2130429,EBI-743428
RSRC2Q7L4I2-23EBI-2130429,EBI-10256202
SCNM1Q9BWG65EBI-2130429,EBI-748391
SDCBPO005607EBI-2130429,EBI-727004
SH2D1BO147965EBI-2130429,EBI-3923013
SMARCE1Q969G35EBI-2130429,EBI-455078
SNF8Q96H205EBI-2130429,EBI-747719
SPG21Q9NZD85EBI-2130429,EBI-742688
SSX2IPQ9Y2D83EBI-2130429,EBI-2212028
TBC1D22BQ9NU193EBI-2130429,EBI-8787464
TCEA2Q155605EBI-2130429,EBI-710310
THOC1Q96FV93EBI-2130429,EBI-1765605
TSHZ3Q63HK55EBI-2130429,EBI-9053916
TTC23Q5W5X93EBI-2130429,EBI-6447954
USHBP1Q8N6Y05EBI-2130429,EBI-739895
UTP14CQ08E773EBI-2130429,EBI-10225961
VPS28Q548N13EBI-2130429,EBI-10243107
WDR34Q96EX33EBI-2130429,EBI-2556091
WDYHV1Q96HA85EBI-2130429,EBI-741158
ZBTB16Q055165EBI-2130429,EBI-711925
ZGPATQ8N5A53EBI-2130429,EBI-3439227
ZNF250P15622-35EBI-2130429,EBI-10177272
ZNF417Q8TAU35EBI-2130429,EBI-740727
ZNF572Q7Z3I78EBI-2130429,EBI-10172590
ZNF587Q96SQ55EBI-2130429,EBI-6427977

GO - Molecular functioni

Complete GO annotation on QuickGO ...

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...BioGridi		121415, 132 interactors

Protein interaction database and analysis system

More...IntActi		Q9BYV2, 194 interactors

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

1358
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		Q9BYV2

Database of comparative protein structure models

More...ModBasei		Search...

Miscellaneous databases

Relative evolutionary importance of amino acids within a protein sequence

More...EvolutionaryTracei		Q9BYV2

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini271 – 329COSPROSITE-ProRule annotationAdd BLAST59

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni168 – 211Mediates microtubule-binding and homooligomerizationBy similarityAdd BLAST44

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili220 – 258Sequence analysisAdd BLAST39

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri26 – 82RING-typePROSITE-ProRule annotationAdd BLAST57
Zinc fingeri121 – 163B box-typePROSITE-ProRule annotationAdd BLAST43

Keywords - Domaini

Coiled coil, Zinc-finger

Phylogenomic databases

Ensembl GeneTree

More...GeneTreei		ENSGT00940000154004

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		HOG000231156

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		Q9BYV2

KEGG Orthology (KO)

More...KOi		K10653

Identification of Orthologs from Complete Genome Data

More...OMAi		GYESMDQ

Database of Orthologous Groups

More...OrthoDBi		824972at2759

Database for complete collections of gene phylogenies

More...PhylomeDBi		Q9BYV2

TreeFam database of animal gene trees

More...TreeFami		TF331669

Family and domain databases

Conserved Domains Database

More...CDDi		cd00021 BBOX, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		3.30.40.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR017903 COS_domain
IPR027370 Znf-RING_LisH
IPR000315 Znf_B-box
IPR001841 Znf_RING
IPR013083 Znf_RING/FYVE/PHD
IPR017907 Znf_RING_CS

Pfam protein domain database

More...Pfami		View protein in Pfam
PF00643 zf-B_box, 1 hit
PF13445 zf-RING_UBOX, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00336 BBOX, 1 hit
SM00184 RING, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS51262 COS, 1 hit
PS50119 ZF_BBOX, 1 hit
PS00518 ZF_RING_1, 1 hit
PS50089 ZF_RING_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (2)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 2 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket
Isoform 1 (identifier: Q9BYV2-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MNFTVGFKPL LGDAHSMDNL EKQLICPICL EMFSKPVVIL PCQHNLCRKC 
        60         70         80         90        100
ANDVFQASNP LWQSRGSTTV SSGGRFRCPS CRHEVVLDRH GVYGLQRNLL 
       110        120        130        140        150
VENIIDIYKQ ESSRPLHSKA EQHLMCEEHE EEKINIYCLS CEVPTCSLCK 
       160        170        180        190        200
VFGAHKDCEV APLPTIYKRQ KSELSDGIAM LVAGNDRVQA VITQMEEVCQ 
       210        220        230        240        250
TIEDNSRRQK QLLNQRFESL CAVLEERKGE LLQALAREQE EKLQRVRGLI 
       260        270        280        290        300
RQYGDHLEAS SKLVESAIQS MEEPQMALYL QQAKELINKV GAMSKVELAG 
       310        320        330        340        350
RPEPGYESME QFTVRVEHVA EMLRTIDFQP GASGEEEEVA PDGEEGSAGP 

EEERPDGP
Length:358
Mass (Da):40,301
Last modified:October 14, 2008 - v3
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iC44B08A9871323F6
GO
Isoform 2 (identifier: Q9BYV2-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     171-171: K → KKQDLTLLPRLECSGTNTTYCSLDLPSSSDPPILASQNTKIID

Show »
Length:400
Mass (Da):44,833
Checksum:iD4D12B4FA81A841F
GO

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAY24296 differs from that shown. Reason: Erroneous initiation.Curated
The sequence CAC32841 differs from that shown. Reason: Erroneous initiation.Curated
The sequence CAC32842 differs from that shown. Reason: Erroneous initiation.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti172S → N in CAC32841 (PubMed:11243782).Curated1
Sequence conflicti214N → T in CAC32841 (PubMed:11243782).Curated1
Sequence conflicti214N → T in CAC32842 (PubMed:11243782).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_016061171K → KKQDLTLLPRLECSGTNTTY CSLDLPSSSDPPILASQNTK IID in isoform 2. 1 Publication1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AJ291714 mRNA Translation: CAC32841.1 Different initiation.
AJ291714 mRNA Translation: CAC32842.1 Different initiation.
AC013413 Genomic DNA Translation: AAY24296.1 Different initiation.
CH471053 Genomic DNA Translation: EAX00606.1
BC141807 mRNA Translation: AAI41808.1

The Consensus CDS (CCDS) project

More...CCDSi		CCDS1745.2 [Q9BYV2-2]
CCDS1746.2 [Q9BYV2-1]

NCBI Reference Sequences

More...RefSeqi		NP_115935.3, NM_032546.3 [Q9BYV2-2]
NP_912730.2, NM_187841.2 [Q9BYV2-1]

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...Ensembli		ENST00000296098; ENSP00000296098; ENSG00000138100 [Q9BYV2-2]
ENST00000380075; ENSP00000369415; ENSG00000138100 [Q9BYV2-1]

Database of genes from NCBI RefSeq genomes

More...GeneIDi		57159

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		hsa:57159

UCSC genome browser

More...UCSCi		uc002rjn.4 human [Q9BYV2-1]

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ291714 mRNA Translation: CAC32841.1 Different initiation.
AJ291714 mRNA Translation: CAC32842.1 Different initiation.
AC013413 Genomic DNA Translation: AAY24296.1 Different initiation.
CH471053 Genomic DNA Translation: EAX00606.1
BC141807 mRNA Translation: AAI41808.1
CCDSiCCDS1745.2 [Q9BYV2-2]
CCDS1746.2 [Q9BYV2-1]
RefSeqiNP_115935.3, NM_032546.3 [Q9BYV2-2]
NP_912730.2, NM_187841.2 [Q9BYV2-1]

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...PDBei

Protein Data Bank RCSB

More...RCSB PDBi

Protein Data Bank Japan

More...PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3Q1DX-ray2.15A122-168[»]
SMRiQ9BYV2
ModBaseiSearch...

Protein-protein interaction databases

BioGridi121415, 132 interactors
IntActiQ9BYV2, 194 interactors

PTM databases

iPTMnetiQ9BYV2
PhosphoSitePlusiQ9BYV2

Polymorphism and mutation databases

BioMutaiTRIM54
DMDMi209572715

Proteomic databases

EPDiQ9BYV2
jPOSTiQ9BYV2
MaxQBiQ9BYV2
PeptideAtlasiQ9BYV2
PRIDEiQ9BYV2
ProteomicsDBi79712
79713 [Q9BYV2-2]

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000296098; ENSP00000296098; ENSG00000138100 [Q9BYV2-2]
ENST00000380075; ENSP00000369415; ENSG00000138100 [Q9BYV2-1]
GeneIDi57159
KEGGihsa:57159
UCSCiuc002rjn.4 human [Q9BYV2-1]

Organism-specific databases

Comparative Toxicogenomics Database

More...CTDi		57159
DisGeNETi57159

GeneCards: human genes, protein and diseases

More...GeneCardsi		TRIM54
HGNCiHGNC:16008 TRIM54
HPAiHPA019690
MIMi606474 gene
neXtProtiNX_Q9BYV2
OpenTargetsiENSG00000138100
PharmGKBiPA34434

GenAtlas: human gene database

More...GenAtlasi		Search...

Phylogenomic databases

GeneTreeiENSGT00940000154004
HOGENOMiHOG000231156
InParanoidiQ9BYV2
KOiK10653
OMAiGYESMDQ
OrthoDBi824972at2759
PhylomeDBiQ9BYV2
TreeFamiTF331669

Miscellaneous databases

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...ChiTaRSi		TRIM54 human
EvolutionaryTraceiQ9BYV2

Database of phenotypes from RNA interference screens in Drosophila and Homo sapiens

More...GenomeRNAii		57159

Protein Ontology

More...PROi		PR:Q9BYV2

The Stanford Online Universal Resource for Clones and ESTs

More...SOURCEi		Search...

Gene expression databases

BgeeiENSG00000138100 Expressed in 101 organ(s), highest expression level in apex of heart
GenevisibleiQ9BYV2 HS

Family and domain databases

CDDicd00021 BBOX, 1 hit
Gene3Di3.30.40.10, 1 hit
InterProiView protein in InterPro
IPR017903 COS_domain
IPR027370 Znf-RING_LisH
IPR000315 Znf_B-box
IPR001841 Znf_RING
IPR013083 Znf_RING/FYVE/PHD
IPR017907 Znf_RING_CS
PfamiView protein in Pfam
PF00643 zf-B_box, 1 hit
PF13445 zf-RING_UBOX, 1 hit
SMARTiView protein in SMART
SM00336 BBOX, 1 hit
SM00184 RING, 1 hit
PROSITEiView protein in PROSITE
PS51262 COS, 1 hit
PS50119 ZF_BBOX, 1 hit
PS00518 ZF_RING_1, 1 hit
PS50089 ZF_RING_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiTRI54_HUMAN
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9BYV2
Secondary accession number(s): A5D8T7, Q53SY4, Q9BYV3
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 8, 2005
Last sequence update: October 14, 2008
Last modified: July 3, 2019
This is version 156 of the entry and version 3 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Human chromosome 2
    Human chromosome 2: entries, gene names and cross-references to MIM
  3. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
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