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Protein

Protein GIGANTEA

Gene

GI

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Involved in regulation of circadian rhythm, and in the control of the photoperiodic flowering. Acts as suppressor of flowering under short-day (SD) and long-day (LD) conditions. Activates Hd1/CONSTANS gene.1 Publication

GO - Biological processi

Keywordsi

Molecular functionDevelopmental protein
Biological processBiological rhythms, Differentiation, Flowering

Names & Taxonomyi

Protein namesi
Recommended name:
Protein GIGANTEA
Gene namesi
Name:GI
Ordered Locus Names:Os01g0182600, LOC_Os01g08700
ORF Names:P0666G04.27-1, P0666G04.27-2
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000874901 – 1160Protein GIGANTEAAdd BLAST1160

Proteomic databases

PaxDbiQ9AWL7
PRIDEiQ9AWL7

Expressioni

Inductioni

Expressed with a circadian rhythm with the highest level 8 hours into the light and the lowest level at dawn. The peak of expression in long days is slightly lower, shifted later and the decrease is slower.1 Publication

Gene expression databases

ExpressionAtlasiQ9AWL7 differential
GenevisibleiQ9AWL7 OS

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os01g08700.1

Structurei

3D structure databases

ProteinModelPortaliQ9AWL7
SMRiQ9AWL7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the GIGANTEA family.Curated

Phylogenomic databases

eggNOGiENOG410IGZR Eukaryota
ENOG410YCNK LUCA
HOGENOMiHOG000050248
InParanoidiQ9AWL7
KOiK12124
OMAiINWQADV
OrthoDBiEOG093600YG

Family and domain databases

InterProiView protein in InterPro
IPR026211 GIGANTEA
PANTHERiPTHR36319 PTHR36319, 1 hit
PRINTSiPR02081 GIGANTEA

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket
Isoform 1 (identifier: Q9AWL7-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MSASNEKWID GLQFSSLFWP PPQDSQQKQA QILAYVEYFG QFTADSEQFP
60 70 80 90 100
EDIAQLIQSC YPSKEKRLVD EVLATFVLHH PEHGHAVVHP ILSRIIDGTL
110 120 130 140 150
SYDRNGFPFM SFISLFSHTS EKEYSEQWAL ACGEILRVLT HYNRPIFKVD
160 170 180 190 200
HQHSEAECSS TSDQASSCES MEKRANGSPR NEPDRKPLRP LSPWITDILL
210 220 230 240 250
AAPLGIRSDY FRWCGGVMGK YAAGGELKPP TTAYSRGSGK HPQLMPSTPR
260 270 280 290 300
WAVANGAGVI LSVCDEEVAR YETANLTAAA VPALLLPPPT TPLDEHLVAG
310 320 330 340 350
LPPLEPYARL FHRYYAIATP SATQRLLFGL LEAPPSWAPD ALDAAVQLVE
360 370 380 390 400
LLRAAEDYDS GMRLPKNWMH LHFLRAIGTA MSMRAGIAAD TSAALLFRIL
410 420 430 440 450
SQPTLLFPPL RHAEGVELHH EPLGGYVSSY KRQLEVPASE ATIDATAQGI
460 470 480 490 500
ASMLCAHGPD VEWRICTIWE AAYGLLPLSS SAVDLPEIVV AAPLQPPTLS
510 520 530 540 550
WSLYLPLLKV FEYLPRGSPS EACLMRIFVA TVEAILRRTF PSETSEQSRK
560 570 580 590 600
PRSQSKNLAV AELRTMIHSL FVESCASMDL ASRLLFVVLT VCVSHQALPG
610 620 630 640 650
GSKRPTGSDN HSSEEVTNDS RLTNGRNRCK KRQGPVATFD SYVLAAVCAL
660 670 680 690 700
SCELQLFPFI SKNGNHSNLK DSIKIVIPGK TTGISNELHN SISSAILHTR
710 720 730 740 750
RILGILEALF SLKPSSVGTS WSYSSNEIVA AAMVAAHVSE LFRRSRPCLN
760 770 780 790 800
ALSALKQCKW DAEISTRASS LYHLIDLHGK TVTSIVNKAE PLEAHLTLTP
810 820 830 840 850
VKKDEPPIEE KNINSSDGGA LEKKDASRSH RKNGFARPLL KCAEDVILNG
860 870 880 890 900
DVASTSGKAI ASLQVEASDL ANFLTMDRNG GYRGSQTLLR SVLSEKQELC
910 920 930 940 950
FSVVSLLWQK LIASPEMQMS AESTSAHQGW RKVVDALCDI VSASPTKASA
960 970 980 990 1000
AIVLQAEKDL QPWIARDDEQ GQKMWRVNQR IVKLIAELMR NHDSPEALVI
1010 1020 1030 1040 1050
LASASDLLLR ATDGMLVDGE ACTLPQLELL EVTARAVHLI VEWGDSGVSV
1060 1070 1080 1090 1100
ADGLSNLLKC RLSTTIRCLS HPSAHVRALS MSVLRDILNS GQINSSKLIQ
1110 1120 1130 1140 1150
GEHRNGIQSP TYQCLAASII NWQADVERCI EWEAHSRRAT GLTLAFLTAA
1160
AKELGCPLTC
Note: No experimental confirmation available.
Length:1,160
Mass (Da):127,067
Last modified:June 7, 2005 - v2
Checksum:iF2422C69B5B5C6E3
GO
Isoform 2 (identifier: Q9AWL7-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     278-959: Missing.

Note: Derived from EST data. No experimental confirmation available.
Show »
Length:478
Mass (Da):53,079
Checksum:i1F4DE2C0ED47B2D8
GO

Sequence cautioni

The sequence BAD68053 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti701Missing in AK067038 (PubMed:12869764).Curated1
Sequence conflicti1149Missing in CAB56058 (PubMed:10469647).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_013910278 – 959Missing in isoform 2. CuratedAdd BLAST682

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP003047 Genomic DNA Translation: BAD68052.1
AP003047 Genomic DNA Translation: BAD68053.1 Sequence problems.
AP008207 Genomic DNA Translation: BAF04134.1
AP014957 Genomic DNA Translation: BAS70743.1
AK067038 mRNA No translation available.
AJ133787 mRNA Translation: CAB56058.1
RefSeqiXP_015649578.1, XM_015794092.1 [Q9AWL7-1]
XP_015649583.1, XM_015794097.1 [Q9AWL7-1]
XP_015649590.1, XM_015794104.1 [Q9AWL7-1]
XP_015649597.1, XM_015794111.1 [Q9AWL7-1]
XP_015649603.1, XM_015794117.1 [Q9AWL7-1]
XP_015649609.1, XM_015794123.1 [Q9AWL7-1]
UniGeneiOs.7987

Genome annotation databases

EnsemblPlantsiOs01t0182600-01; Os01t0182600-01; Os01g0182600 [Q9AWL7-1]
Os01t0182600-03; Os01t0182600-03; Os01g0182600 [Q9AWL7-1]
GeneIDi4325329
GrameneiOs01t0182600-01; Os01t0182600-01; Os01g0182600 [Q9AWL7-1]
Os01t0182600-03; Os01t0182600-03; Os01g0182600 [Q9AWL7-1]
KEGGiosa:4325329

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP003047 Genomic DNA Translation: BAD68052.1
AP003047 Genomic DNA Translation: BAD68053.1 Sequence problems.
AP008207 Genomic DNA Translation: BAF04134.1
AP014957 Genomic DNA Translation: BAS70743.1
AK067038 mRNA No translation available.
AJ133787 mRNA Translation: CAB56058.1
RefSeqiXP_015649578.1, XM_015794092.1 [Q9AWL7-1]
XP_015649583.1, XM_015794097.1 [Q9AWL7-1]
XP_015649590.1, XM_015794104.1 [Q9AWL7-1]
XP_015649597.1, XM_015794111.1 [Q9AWL7-1]
XP_015649603.1, XM_015794117.1 [Q9AWL7-1]
XP_015649609.1, XM_015794123.1 [Q9AWL7-1]
UniGeneiOs.7987

3D structure databases

ProteinModelPortaliQ9AWL7
SMRiQ9AWL7
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os01g08700.1

Proteomic databases

PaxDbiQ9AWL7
PRIDEiQ9AWL7

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOs01t0182600-01; Os01t0182600-01; Os01g0182600 [Q9AWL7-1]
Os01t0182600-03; Os01t0182600-03; Os01g0182600 [Q9AWL7-1]
GeneIDi4325329
GrameneiOs01t0182600-01; Os01t0182600-01; Os01g0182600 [Q9AWL7-1]
Os01t0182600-03; Os01t0182600-03; Os01g0182600 [Q9AWL7-1]
KEGGiosa:4325329

Phylogenomic databases

eggNOGiENOG410IGZR Eukaryota
ENOG410YCNK LUCA
HOGENOMiHOG000050248
InParanoidiQ9AWL7
KOiK12124
OMAiINWQADV
OrthoDBiEOG093600YG

Gene expression databases

ExpressionAtlasiQ9AWL7 differential
GenevisibleiQ9AWL7 OS

Family and domain databases

InterProiView protein in InterPro
IPR026211 GIGANTEA
PANTHERiPTHR36319 PTHR36319, 1 hit
PRINTSiPR02081 GIGANTEA
ProtoNetiSearch...

Entry informationi

Entry nameiGIGAN_ORYSJ
AccessioniPrimary (citable) accession number: Q9AWL7
Secondary accession number(s): Q0JQ44
, Q5VR72, Q5VR73, Q9SMB2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 5, 2001
Last sequence update: June 7, 2005
Last modified: November 7, 2018
This is version 90 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
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