UniProtKB - Q9AFI5 (SSB_MYCS2)
Protein
Single-stranded DNA-binding protein
Gene
ssb
Organism
Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis)
Status
Functioni
GO - Molecular functioni
- single-stranded DNA binding Source: UniProtKB-UniRule
GO - Biological processi
- DNA replication Source: InterPro
Keywordsi
Molecular function | DNA-binding |
Enzyme and pathway databases
BioCyci | MSME246196:G1H7P-6859-MONOMER |
Names & Taxonomyi
Protein namesi | Recommended name: Single-stranded DNA-binding proteinUniRule annotationShort name: SSBUniRule annotation |
Gene namesi | Name:ssb Ordered Locus Names:MSMEG_6896, MSMEI_6712 |
Organismi | Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) |
Taxonomic identifieri | 246196 [NCBI] |
Taxonomic lineagei | Bacteria › Actinobacteria › Corynebacteriales › Mycobacteriaceae › Mycolicibacterium › |
Proteomesi |
|
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000096068 | 1 – 165 | Single-stranded DNA-binding proteinAdd BLAST | 165 |
Proteomic databases
PRIDEi | Q9AFI5 |
Interactioni
Subunit structurei
Homotetramer.
Interacts with RecA.
UniRule annotation3 PublicationsProtein-protein interaction databases
STRINGi | 246196.MSMEI_6712 |
Structurei
Secondary structure
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details3D structure databases
SMRi | Q9AFI5 |
ModBasei | Search... |
PDBe-KBi | Search... |
Miscellaneous databases
EvolutionaryTracei | Q9AFI5 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 1 – 110 | SSBUniRule annotationAdd BLAST | 110 |
Phylogenomic databases
eggNOGi | COG0629, Bacteria |
OMAi | ASGFDDM |
OrthoDBi | 1942216at2 |
Family and domain databases
CDDi | cd04496, SSB_OBF, 1 hit |
HAMAPi | MF_00984, SSB, 1 hit |
InterProi | View protein in InterPro IPR012340, NA-bd_OB-fold IPR000424, Primosome_PriB/ssb IPR011344, ssDNA-bd |
PANTHERi | PTHR10302, PTHR10302, 1 hit |
Pfami | View protein in Pfam PF00436, SSB, 1 hit |
SUPFAMi | SSF50249, SSF50249, 1 hit |
TIGRFAMsi | TIGR00621, ssb, 1 hit |
PROSITEi | View protein in PROSITE PS50935, SSB, 1 hit |
i Sequence
Sequence statusi: Complete.
Q9AFI5-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MAGDTTITVV GNLTADPELR FTPSGAAVAN FTVASTPRMF DRQSGEWKDG
60 70 80 90 100
EALFLRCNIW REAAENVAES LTRGSRVIVT GRLKQRSFET REGEKRTVVE
110 120 130 140 150
VEVDEIGPSL RYATAKVNKA SRSGGGGGGF GSGGGGSRQS EPKDDPWGSA
160
PASGSFSGAD DEPPF
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AF349434 Genomic DNA Translation: AAK30583.1 CP000480 Genomic DNA Translation: ABK71618.1 CP001663 Genomic DNA Translation: AFP43138.1 |
RefSeqi | WP_003898320.1, NZ_SIJM01000001.1 YP_891096.1, NC_008596.1 |
Genome annotation databases
EnsemblBacteriai | ABK71618; ABK71618; MSMEG_6896 AFP43138; AFP43138; MSMEI_6712 |
GeneIDi | 45748119 |
KEGGi | msg:MSMEI_6712 msm:MSMEG_6896 |
PATRICi | fig|246196.19.peg.6717 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AF349434 Genomic DNA Translation: AAK30583.1 CP000480 Genomic DNA Translation: ABK71618.1 CP001663 Genomic DNA Translation: AFP43138.1 |
RefSeqi | WP_003898320.1, NZ_SIJM01000001.1 YP_891096.1, NC_008596.1 |
3D structure databases
Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
1X3E | X-ray | 2.15 | A/B | 1-165 | [»] | |
1X3F | X-ray | 2.70 | A/B | 1-165 | [»] | |
1X3G | X-ray | 3.00 | A/B | 1-165 | [»] | |
3A5U | X-ray | 2.80 | A/B | 1-130 | [»] | |
SMRi | Q9AFI5 | |||||
ModBasei | Search... | |||||
PDBe-KBi | Search... |
Protein-protein interaction databases
STRINGi | 246196.MSMEI_6712 |
Proteomic databases
PRIDEi | Q9AFI5 |
Genome annotation databases
EnsemblBacteriai | ABK71618; ABK71618; MSMEG_6896 AFP43138; AFP43138; MSMEI_6712 |
GeneIDi | 45748119 |
KEGGi | msg:MSMEI_6712 msm:MSMEG_6896 |
PATRICi | fig|246196.19.peg.6717 |
Phylogenomic databases
eggNOGi | COG0629, Bacteria |
OMAi | ASGFDDM |
OrthoDBi | 1942216at2 |
Enzyme and pathway databases
BioCyci | MSME246196:G1H7P-6859-MONOMER |
Miscellaneous databases
EvolutionaryTracei | Q9AFI5 |
Family and domain databases
CDDi | cd04496, SSB_OBF, 1 hit |
HAMAPi | MF_00984, SSB, 1 hit |
InterProi | View protein in InterPro IPR012340, NA-bd_OB-fold IPR000424, Primosome_PriB/ssb IPR011344, ssDNA-bd |
PANTHERi | PTHR10302, PTHR10302, 1 hit |
Pfami | View protein in Pfam PF00436, SSB, 1 hit |
SUPFAMi | SSF50249, SSF50249, 1 hit |
TIGRFAMsi | TIGR00621, ssb, 1 hit |
PROSITEi | View protein in PROSITE PS50935, SSB, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | SSB_MYCS2 | |
Accessioni | Q9AFI5Primary (citable) accession number: Q9AFI5 Secondary accession number(s): A0R7F8, I7FVY6 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | October 24, 2003 |
Last sequence update: | June 1, 2001 | |
Last modified: | February 10, 2021 | |
This is version 124 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Prokaryotic Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
3D-structure, Reference proteomeDocuments
- PDB cross-references
Index of Protein Data Bank (PDB) cross-references