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Protein

LysM and putative peptidoglycan-binding domain-containing protein 3

Gene

Lysmd3

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
LysM and putative peptidoglycan-binding domain-containing protein 3
Gene namesi
Name:Lysmd3
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 13

Organism-specific databases

MGIiMGI:1915906 Lysmd3

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 216ExtracellularSequence analysisAdd BLAST216
Transmembranei217 – 237HelicalSequence analysisAdd BLAST21
Topological domaini238 – 305CytoplasmicSequence analysisAdd BLAST68

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002480081 – 305LysM and putative peptidoglycan-binding domain-containing protein 3Add BLAST305

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi7N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi26N-linked (GlcNAc...) asparagineSequence analysis1
Modified residuei55PhosphoserineBy similarity1
Glycosylationi199N-linked (GlcNAc...) asparagineSequence analysis1

Keywords - PTMi

Glycoprotein, Phosphoprotein

Proteomic databases

MaxQBiQ99LE3
PaxDbiQ99LE3
PeptideAtlasiQ99LE3
PRIDEiQ99LE3

PTM databases

iPTMnetiQ99LE3
PhosphoSitePlusiQ99LE3

Expressioni

Gene expression databases

BgeeiENSMUSG00000035840 Expressed in 273 organ(s), highest expression level in pineal body
ExpressionAtlasiQ99LE3 baseline and differential
GenevisibleiQ99LE3 MM

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000038275

Structurei

3D structure databases

ProteinModelPortaliQ99LE3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini65 – 109LysMPROSITE-ProRule annotationAdd BLAST45

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG2850 Eukaryota
ENOG4112BYV LUCA
GeneTreeiENSGT00530000063803
HOGENOMiHOG000237338
HOVERGENiHBG081944
InParanoidiQ99LE3
OMAiPYYGADW
OrthoDBiEOG091G0Q9I
PhylomeDBiQ99LE3
TreeFamiTF326271

Family and domain databases

CDDicd00118 LysM, 1 hit
Gene3Di3.10.350.10, 1 hit
InterProiView protein in InterPro
IPR018392 LysM_dom
IPR036779 LysM_dom_sf
PfamiView protein in Pfam
PF01476 LysM, 1 hit
SMARTiView protein in SMART
SM00257 LysM, 1 hit
PROSITEiView protein in PROSITE
PS51782 LYSM, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 3 potential isoforms that are computationally mapped.Show allAlign All

Q99LE3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAGRNQNRTV SLPGIQASGH VLAFGNCTDN DMLEEDAEVY ELRSRGKEKV
60 70 80 90 100
RRSASRDRLD DIVILTKDIQ EGDTLNAVAL QYCCTVADIK RVNNLISDQD
110 120 130 140 150
FFALRSIKIP VKRFSSLTET LHPLKGRHIL HPPPVPYFQE QDIVPADGSL
160 170 180 190 200
SSSESAGSFL KEVDRDIEQI VKCTDTKKEN LNEVVSALTA QQVRFEPDNK
210 220 230 240 250
SIHRKDPYYG ADWGIGWWTA VVIMLIVGII TPVFYLLYYE ILAKVDVSHH
260 270 280 290 300
STVGSSHLHP GLTPPTQHRE MENEIGPTKG IPVGQQDDHK LYRQDPQAHD

AQHKT
Length:305
Mass (Da):34,258
Last modified:June 1, 2001 - v1
Checksum:iCC65D0C53B734462
GO

Computationally mapped potential isoform sequencesi

There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A2C9F2A6A0A2C9F2A6_MOUSE
LysM and putative peptidoglycan-bin...
Lysmd3
91Annotation score:
A0A286YCK3A0A286YCK3_MOUSE
LysM and putative peptidoglycan-bin...
Lysmd3
73Annotation score:
A0A286YCE3A0A286YCE3_MOUSE
LysM and putative peptidoglycan-bin...
Lysmd3
26Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC003322 mRNA Translation: AAH03322.1
CCDSiCCDS26660.1
RefSeqiNP_084533.1, NM_030257.1
XP_006517538.1, XM_006517475.2
UniGeneiMm.259969
Mm.439853

Genome annotation databases

EnsembliENSMUST00000224300; ENSMUSP00000152940; ENSMUSG00000035840
GeneIDi80289
KEGGimmu:80289
UCSCiuc007rhw.1 mouse

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC003322 mRNA Translation: AAH03322.1
CCDSiCCDS26660.1
RefSeqiNP_084533.1, NM_030257.1
XP_006517538.1, XM_006517475.2
UniGeneiMm.259969
Mm.439853

3D structure databases

ProteinModelPortaliQ99LE3
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000038275

PTM databases

iPTMnetiQ99LE3
PhosphoSitePlusiQ99LE3

Proteomic databases

MaxQBiQ99LE3
PaxDbiQ99LE3
PeptideAtlasiQ99LE3
PRIDEiQ99LE3

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000224300; ENSMUSP00000152940; ENSMUSG00000035840
GeneIDi80289
KEGGimmu:80289
UCSCiuc007rhw.1 mouse

Organism-specific databases

CTDi116068
MGIiMGI:1915906 Lysmd3

Phylogenomic databases

eggNOGiKOG2850 Eukaryota
ENOG4112BYV LUCA
GeneTreeiENSGT00530000063803
HOGENOMiHOG000237338
HOVERGENiHBG081944
InParanoidiQ99LE3
OMAiPYYGADW
OrthoDBiEOG091G0Q9I
PhylomeDBiQ99LE3
TreeFamiTF326271

Miscellaneous databases

PROiPR:Q99LE3
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000035840 Expressed in 273 organ(s), highest expression level in pineal body
ExpressionAtlasiQ99LE3 baseline and differential
GenevisibleiQ99LE3 MM

Family and domain databases

CDDicd00118 LysM, 1 hit
Gene3Di3.10.350.10, 1 hit
InterProiView protein in InterPro
IPR018392 LysM_dom
IPR036779 LysM_dom_sf
PfamiView protein in Pfam
PF01476 LysM, 1 hit
SMARTiView protein in SMART
SM00257 LysM, 1 hit
PROSITEiView protein in PROSITE
PS51782 LYSM, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiLYSM3_MOUSE
AccessioniPrimary (citable) accession number: Q99LE3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 5, 2006
Last sequence update: June 1, 2001
Last modified: October 10, 2018
This is version 112 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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