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Entry version 124 (16 Oct 2019)
Sequence version 2 (21 Aug 2007)
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Protein

Pyridoxal-dependent decarboxylase domain-containing protein 1

Gene

Pdxdc1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>This subsection of the ‘Function’ section provides information relevant to cofactors. A cofactor is any non-protein substance required for a protein to be catalytically active. Some cofactors are inorganic, such as the metal atoms zinc, iron, and copper in various oxidation states. Others, such as most vitamins, are organic.<p><a href='/help/cofactor' target='_top'>More...</a></p>Cofactori

pyridoxal 5'-phosphateBy similarity

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDecarboxylase, Lyase
LigandPyridoxal phosphate

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Pyridoxal-dependent decarboxylase domain-containing protein 1 (EC:4.1.1.-)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Pdxdc1
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 16

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...
MGIi
MGI:1920909 Pdxdc1

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00002976781 – 787Pyridoxal-dependent decarboxylase domain-containing protein 1Add BLAST787

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei652PhosphoserineBy similarity1
Modified residuei687PhosphothreonineCombined sources1
Modified residuei691PhosphothreonineCombined sources1
Modified residuei710PhosphoserineBy similarity1
Modified residuei718PhosphoserineCombined sources1
Modified residuei722PhosphoserineBy similarity1
Modified residuei748PhosphoserineCombined sources1
Modified residuei778PhosphoserineBy similarity1

Keywords - PTMi

Phosphoprotein

Proteomic databases

Encyclopedia of Proteome Dynamics

More...
EPDi
Q99K01

jPOST - Japan Proteome Standard Repository/Database

More...
jPOSTi
Q99K01

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q99K01

PeptideAtlas

More...
PeptideAtlasi
Q99K01

PRoteomics IDEntifications database

More...
PRIDEi
Q99K01

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q99K01

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
Q99K01

SwissPalm database of S-palmitoylation events

More...
SwissPalmi
Q99K01

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSMUSG00000022680 Expressed in 295 organ(s), highest expression level in large intestine

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q99K01 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q99K01 MM

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...
BioGridi
220462, 1 interactor

Protein interaction database and analysis system

More...
IntActi
Q99K01, 3 interactors

Molecular INTeraction database

More...
MINTi
Q99K01

STRING: functional protein association networks

More...
STRINGi
10090.ENSMUSP00000111471

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the group II decarboxylase family.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0630 Eukaryota
ENOG410XYFU LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00390000009628

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q99K01

Identification of Orthologs from Complete Genome Data

More...
OMAi
AIVARCP

Database of Orthologous Groups

More...
OrthoDBi
804210at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q99K01

TreeFam database of animal gene trees

More...
TreeFami
TF313101

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.40.640.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR002129 PyrdxlP-dep_de-COase
IPR015424 PyrdxlP-dep_Trfase
IPR015421 PyrdxlP-dep_Trfase_major

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00282 Pyridoxal_deC, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF53383 SSF53383, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (5+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 5 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 5 described isoforms and 2 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: Q99K01-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MDASLEKIAD PTLAEMGKNL KEAMRMLEKS PRRTEEENGK KPVSEDIPGP
60 70 80 90 100
LQGSGQDMVS ILQLVQNLMH GDEDEEPQST RIQNIGEQGH MALLGHSLGA
110 120 130 140 150
YISTLDKEKL RKLTTRILSD TTLWLRRIFR YENGCAYFHE EEREGLAKIC
160 170 180 190 200
RLAIHSRYED FVVDGFNVLY NKKPVIYLSA AARPGLGQYL CNQLGLPFPC
210 220 230 240 250
LCRVPCNTMF GSQHQMDVAF LEKLIKDDVE RGRLPLLLVA NAGTAAVGHT
260 270 280 290 300
DKIGRLKELC EQYGIWLHVE GVNLATLALG YVSSSVLAAT KCDSMTLTPG
310 320 330 340 350
LWLGLPAVPA VTLYKHDDPA LTLVAGLTSN KPADKLRALP LWLSLQYLGL
360 370 380 390 400
DGIVERIKHA CHLSQRLQES LKKVDHIKIL VEDELSSPVV VFRFFQELPA
410 420 430 440 450
SDSAFKAVPV SNIAPAAVGR ERHSCDALNR WLGEQLKQLV PQCGLTVIDL
460 470 480 490 500
EVDGTCVRFS PLMTAEGLGT RGEDVDQLIT CIQSKLPVLT CTLQLREEFK
510 520 530 540 550
QEVEGTAGLL YVDDPNWPGI GVVRYEHAND DDTSLKSDPE GEKIHTGLLK
560 570 580 590 600
KLNELESDLT FKIGPEYKSM KSCIYIGMAS DDVDVSELVE TIAVTAREIE
610 620 630 640 650
ENSRLLENMT EVVRKGIQEA QVQLQKANEE RLLEEGVLRQ IPVVGSVLNW
660 670 680 690 700
FSPVQASQKG RSFNLTAGSL ESTEYTYVHK VQGTGVTPPP TPLGTRSKQR
710 720 730 740 750
LPGQKPFKRS LRGSDAVSET SSVSHIEDLE KVEQLSSGLE HDNLEAHSPE
760 770 780
QPPRATDLTA RQTEALQNQA QHQEDDHSQV EELERLR
Length:787
Mass (Da):87,335
Last modified:August 21, 2007 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i21B24DB271823DDC
GO
Isoform 2 (identifier: Q99K01-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     780-787: VEELERLR → MGTRVQRLK

Show »
Length:788
Mass (Da):87,381
Checksum:i8095816F7BB2B88E
GO
Isoform 3 (identifier: Q99K01-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     703-787: GQKPFKRSLR...SQVEELERLR → DGNQGAET

Note: No experimental confirmation available.
Show »
Length:710
Mass (Da):78,543
Checksum:iD9E956DD15318900
GO
Isoform 4 (identifier: Q99K01-4) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     702-702: P → PVRLMSL

Note: No experimental confirmation available.
Show »
Length:793
Mass (Da):88,035
Checksum:i9AED15D98A6B8209
GO
Isoform 5 (identifier: Q99K01-5) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     381-384: VEDE → GFSV
     385-787: Missing.

Note: No experimental confirmation available.
Show »
Length:384
Mass (Da):42,650
Checksum:iDA8B82BDD666A8ED
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A0R4J034A0A0R4J034_MOUSE
MCG129810, isoform CRA_c
Pdxdc1 mCG_129810
789Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
D3YZA7D3YZA7_MOUSE
Pyridoxal-dependent decarboxylase d...
Pdxdc1
378Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence BAC35991 differs from that shown. Reason: Erroneous initiation.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti176I → T in BAE38276 (PubMed:16141072).Curated1
Sequence conflicti229V → I in AAH05541 (PubMed:15489334).Curated1
Sequence conflicti356R → K in AAH05541 (PubMed:15489334).Curated1
Sequence conflicti423H → Q in BAE38276 (PubMed:16141072).Curated1
Sequence conflicti685G → W in BAC27047 (PubMed:16141072).Curated1
Sequence conflicti756T → A in AAH05541 (PubMed:15489334).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_029421381 – 384VEDE → GFSV in isoform 5. 1 Publication4
Alternative sequenceiVSP_029422385 – 787Missing in isoform 5. 1 PublicationAdd BLAST403
Alternative sequenceiVSP_027344702P → PVRLMSL in isoform 4. 1 Publication1
Alternative sequenceiVSP_027345703 – 787GQKPF…LERLR → DGNQGAET in isoform 3. 1 PublicationAdd BLAST85
Alternative sequenceiVSP_027346780 – 787VEELERLR → MGTRVQRLK in isoform 2. 1 Publication8

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AK004611 mRNA Translation: BAB23408.1
AK030613 mRNA Translation: BAC27047.1
AK033107 mRNA Translation: BAC28155.1
AK054329 mRNA Translation: BAC35732.1
AK075829 mRNA Translation: BAC35991.1 Different initiation.
AK163696 mRNA Translation: BAE37462.1
AK165587 mRNA Translation: BAE38276.1
AK170661 mRNA Translation: BAE41943.1
BC005541 mRNA Translation: AAH05541.1

The Consensus CDS (CCDS) project

More...
CCDSi
CCDS37261.1 [Q99K01-3]

NCBI Reference Sequences

More...
RefSeqi
NP_001034622.1, NM_001039533.2 [Q99K01-3]
NP_001277946.1, NM_001291017.1
NP_444411.2, NM_053181.3 [Q99K01-1]

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSMUST00000115802; ENSMUSP00000111468; ENSMUSG00000022680 [Q99K01-5]
ENSMUST00000115804; ENSMUSP00000111471; ENSMUSG00000022680 [Q99K01-3]

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
94184

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
mmu:94184

UCSC genome browser

More...
UCSCi
uc007ygl.2 mouse [Q99K01-3]
uc007ygm.2 mouse [Q99K01-2]
uc007ygn.2 mouse [Q99K01-1]

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK004611 mRNA Translation: BAB23408.1
AK030613 mRNA Translation: BAC27047.1
AK033107 mRNA Translation: BAC28155.1
AK054329 mRNA Translation: BAC35732.1
AK075829 mRNA Translation: BAC35991.1 Different initiation.
AK163696 mRNA Translation: BAE37462.1
AK165587 mRNA Translation: BAE38276.1
AK170661 mRNA Translation: BAE41943.1
BC005541 mRNA Translation: AAH05541.1
CCDSiCCDS37261.1 [Q99K01-3]
RefSeqiNP_001034622.1, NM_001039533.2 [Q99K01-3]
NP_001277946.1, NM_001291017.1
NP_444411.2, NM_053181.3 [Q99K01-1]

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

BioGridi220462, 1 interactor
IntActiQ99K01, 3 interactors
MINTiQ99K01
STRINGi10090.ENSMUSP00000111471

PTM databases

iPTMnetiQ99K01
PhosphoSitePlusiQ99K01
SwissPalmiQ99K01

Proteomic databases

EPDiQ99K01
jPOSTiQ99K01
PaxDbiQ99K01
PeptideAtlasiQ99K01
PRIDEiQ99K01

Genome annotation databases

EnsembliENSMUST00000115802; ENSMUSP00000111468; ENSMUSG00000022680 [Q99K01-5]
ENSMUST00000115804; ENSMUSP00000111471; ENSMUSG00000022680 [Q99K01-3]
GeneIDi94184
KEGGimmu:94184
UCSCiuc007ygl.2 mouse [Q99K01-3]
uc007ygm.2 mouse [Q99K01-2]
uc007ygn.2 mouse [Q99K01-1]

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
23042
MGIiMGI:1920909 Pdxdc1

Phylogenomic databases

eggNOGiKOG0630 Eukaryota
ENOG410XYFU LUCA
GeneTreeiENSGT00390000009628
InParanoidiQ99K01
OMAiAIVARCP
OrthoDBi804210at2759
PhylomeDBiQ99K01
TreeFamiTF313101

Miscellaneous databases

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...
ChiTaRSi
Pdxdc1 mouse

Protein Ontology

More...
PROi
PR:Q99K01

The Stanford Online Universal Resource for Clones and ESTs

More...
SOURCEi
Search...

Gene expression databases

BgeeiENSMUSG00000022680 Expressed in 295 organ(s), highest expression level in large intestine
ExpressionAtlasiQ99K01 baseline and differential
GenevisibleiQ99K01 MM

Family and domain databases

Gene3Di3.40.640.10, 1 hit
InterProiView protein in InterPro
IPR002129 PyrdxlP-dep_de-COase
IPR015424 PyrdxlP-dep_Trfase
IPR015421 PyrdxlP-dep_Trfase_major
PfamiView protein in Pfam
PF00282 Pyridoxal_deC, 1 hit
SUPFAMiSSF53383 SSF53383, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPDXD1_MOUSE
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q99K01
Secondary accession number(s): Q3TCL3
, Q3TN13, Q8BMK9, Q8BW02, Q8BW51, Q8BZZ4, Q9DC25
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 21, 2007
Last sequence update: August 21, 2007
Last modified: October 16, 2019
This is version 124 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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