UniProtKB - Q99081 (HTF4_HUMAN)
Transcription factor 12
TCF12
Functioni
GO - Molecular functioni
- bHLH transcription factor binding Source: BHF-UCL
- cAMP response element binding Source: Ensembl
- cis-regulatory region sequence-specific DNA binding Source: BHF-UCL
- DNA-binding transcription activator activity, RNA polymerase II-specific Source: NTNU_SB
- DNA-binding transcription factor activity Source: BHF-UCL
- DNA-binding transcription factor activity, RNA polymerase II-specific Source: NTNU_SB
- E-box binding Source: Ensembl
- HMG box domain binding Source: Ensembl
- protein heterodimerization activity Source: Ensembl
- RNA polymerase II cis-regulatory region sequence-specific DNA binding Source: NTNU_SB
- sequence-specific double-stranded DNA binding Source: ARUK-UCL
- SMAD binding Source: BHF-UCL
- transcription factor binding Source: BHF-UCL
GO - Biological processi
- cell differentiation Source: UniProtKB-KW
- immune response Source: ProtInc
- muscle organ development Source: ProtInc
- nervous system development Source: UniProtKB-KW
- positive regulation of neuron differentiation Source: Ensembl
- positive regulation of transcription by RNA polymerase II Source: NTNU_SB
- regulation of hematopoietic stem cell differentiation Source: Reactome
- regulation of transcription by RNA polymerase II Source: GO_Central
Keywordsi
Molecular function | Developmental protein, DNA-binding |
Biological process | Differentiation, Neurogenesis, Transcription, Transcription regulation |
Enzyme and pathway databases
PathwayCommonsi | Q99081 |
Reactomei | R-HSA-525793, Myogenesis R-HSA-8939236, RUNX1 regulates transcription of genes involved in differentiation of HSCs R-HSA-9031628, NGF-stimulated transcription |
SIGNORi | Q99081 |
Names & Taxonomyi
Protein namesi | Recommended name: Transcription factor 12Short name: TCF-12 Alternative name(s): Class B basic helix-loop-helix protein 20 Short name: bHLHb20 DNA-binding protein HTF4 E-box-binding protein Transcription factor HTF-4 |
Gene namesi | Name:TCF12 Synonyms:BHLHB20, HEB, HTF4 |
Organismi | Homo sapiens (Human) |
Taxonomic identifieri | 9606 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Proteomesi |
|
Organism-specific databases
HGNCi | HGNC:11623, TCF12 |
MIMi | 600480, gene |
neXtProti | NX_Q99081 |
VEuPathDBi | HostDB:ENSG00000140262.17 |
Subcellular locationi
Nucleus
Nucleus
- nuclear speck Source: HPA
- nucleoplasm Source: HPA
- nucleus Source: LIFEdb
- RNA polymerase II transcription regulator complex Source: BHF-UCL
Other locations
- chromatin Source: BHF-UCL
- cytoplasm Source: BHF-UCL
- intracellular membrane-bounded organelle Source: HPA
- transcription regulator complex Source: GO_Central
Keywords - Cellular componenti
NucleusPathology & Biotechi
Involvement in diseasei
Craniosynostosis 3 (CRS3)2 Publications
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Natural variantiVAR_072271 | 483 | L → R in CRS3. 1 PublicationCorresponds to variant dbSNP:rs36060670Ensembl. | 1 | |
Natural variantiVAR_070096 | 600 | L → P in CRS3. 1 Publication | 1 | |
Natural variantiVAR_070097 | 614 | Q → E in CRS3. 1 PublicationCorresponds to variant dbSNP:rs886037641Ensembl. | 1 |
Mutagenesis
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Mutagenesisi | 187 | P → A: Decreases interaction with RUNX1T1. 1 Publication | 1 | |
Mutagenesisi | 191 | P → A: Decreases interaction with RUNX1T1. 1 Publication | 1 | |
Mutagenesisi | 192 | S → A: Decreases interaction with RUNX1T1. 1 Publication | 1 |
Keywords - Diseasei
Craniosynostosis, Disease variantOrganism-specific databases
DisGeNETi | 6938 |
MalaCardsi | TCF12 |
MIMi | 615314, phenotype |
OpenTargetsi | ENSG00000140262 |
Orphaneti | 209916, Extraskeletal myxoid chondrosarcoma 35099, Isolated brachycephaly 35098, Isolated plagiocephaly |
PharmGKBi | PA36381 |
Miscellaneous databases
Pharosi | Q99081, Tbio |
Genetic variation databases
BioMutai | TCF12 |
DMDMi | 1708332 |
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000127228 | 1 – 682 | Transcription factor 12Add BLAST | 682 |
Amino acid modifications
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Modified residuei | 47 | PhosphoserineCombined sources | 1 | |
Modified residuei | 67 | PhosphoserineCombined sources | 1 | |
Modified residuei | 79 | PhosphoserineCombined sources | 1 | |
Modified residuei | 98 | PhosphoserineCombined sources | 1 | |
Cross-linki | 110 | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)Combined sources | ||
Modified residuei | 116 | PhosphoserineCombined sources | 1 | |
Cross-linki | 181 | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)Combined sources | ||
Modified residuei | 313 | PhosphothreonineCombined sources | 1 | |
Modified residuei | 333 | PhosphoserineCombined sources | 1 | |
Cross-linki | 519 | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)Combined sources | ||
Modified residuei | 540 | PhosphoserineCombined sources | 1 | |
Cross-linki | 550 | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)Combined sources | ||
Modified residuei | 557 | PhosphothreonineCombined sources | 1 | |
Modified residuei | 558 | PhosphoserineCombined sources | 1 | |
Modified residuei | 559 | PhosphoserineCombined sources | 1 | |
Cross-linki | 609 | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)Combined sources | ||
Cross-linki | 653 | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)Combined sources |
Keywords - PTMi
Isopeptide bond, Phosphoprotein, Ubl conjugationProteomic databases
EPDi | Q99081 |
jPOSTi | Q99081 |
MassIVEi | Q99081 |
MaxQBi | Q99081 |
PaxDbi | Q99081 |
PeptideAtlasi | Q99081 |
PRIDEi | Q99081 |
ProteomicsDBi | 5790 78231 [Q99081-1] 78232 [Q99081-2] 78233 [Q99081-3] |
PTM databases
iPTMneti | Q99081 |
PhosphoSitePlusi | Q99081 |
Expressioni
Tissue specificityi
Gene expression databases
Bgeei | ENSG00000140262, Expressed in corpus callosum and 245 other tissues |
ExpressionAtlasi | Q99081, baseline and differential |
Genevisiblei | Q99081, HS |
Organism-specific databases
HPAi | ENSG00000140262, Tissue enhanced (lymphoid) |
Interactioni
Subunit structurei
Efficient DNA binding requires dimerization with another bHLH protein. Forms homo- or heterooligomers with myogenin, E12 and ITF2 proteins.
Interacts with PTF1A.
Interacts with NEUROD2 (By similarity).
Interacts with RUNX1T1.
Interacts with AML1-MTG8/ETO (via nervy homology region 2 in oligomerized form) (PubMed:23812588).
Interacts with BHLHA9 (PubMed:25466284).
By similarity4 PublicationsBinary interactionsi
Q99081
Isoform 3 [Q99081-3]
GO - Molecular functioni
- bHLH transcription factor binding Source: BHF-UCL
- HMG box domain binding Source: Ensembl
- protein heterodimerization activity Source: Ensembl
- SMAD binding Source: BHF-UCL
- transcription factor binding Source: BHF-UCL
Protein-protein interaction databases
BioGRIDi | 112798, 113 interactors |
CORUMi | Q99081 |
DIPi | DIP-29403N |
IntActi | Q99081, 100 interactors |
MINTi | Q99081 |
STRINGi | 9606.ENSP00000388940 |
Miscellaneous databases
RNActi | Q99081, protein |
Structurei
Secondary structure
3D structure databases
BMRBi | Q99081 |
SMRi | Q99081 |
ModBasei | Search... |
PDBe-KBi | Search... |
Miscellaneous databases
EvolutionaryTracei | Q99081 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 577 – 630 | bHLHPROSITE-ProRule annotationAdd BLAST | 54 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 119 – 140 | Leucine-zipperAdd BLAST | 22 | |
Regioni | 182 – 196 | Interaction with RUNX1T11 PublicationAdd BLAST | 15 | |
Regioni | 632 – 655 | Class A specific domainAdd BLAST | 24 |
Motif
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Motifi | 19 – 27 | 9aaTAD | 9 |
Domaini
Phylogenomic databases
eggNOGi | KOG3910, Eukaryota |
GeneTreei | ENSGT00940000155047 |
HOGENOMi | CLU_021099_2_0_1 |
InParanoidi | Q99081 |
OMAi | RYADEDC |
OrthoDBi | 571132at2759 |
PhylomeDBi | Q99081 |
TreeFami | TF321672 |
Family and domain databases
Gene3Di | 4.10.280.10, 1 hit |
IDEALi | IID00222 |
InterProi | View protein in InterPro IPR011598, bHLH_dom IPR036638, HLH_DNA-bd_sf |
Pfami | View protein in Pfam PF00010, HLH, 1 hit |
SMARTi | View protein in SMART SM00353, HLH, 1 hit |
SUPFAMi | SSF47459, SSF47459, 1 hit |
PROSITEi | View protein in PROSITE PS50888, BHLH, 1 hit |
s (4+)i Sequence
Sequence statusi: Complete.
This entry describes 4 produced by isoformsialternative splicing. AlignAdd to basketThis entry has 4 described isoforms and 8 potential isoforms that are computationally mapped.Show allAlign All
This isoform has been chosen as the sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. canonicali
10 20 30 40 50
MNPQQQRMAA IGTDKELSDL LDFSAMFSPP VNSGKTRPTT LGSSQFSGSG
60 70 80 90 100
IDERGGTTSW GTSGQPSPSY DSSRGFTDSP HYSDHLNDSR LGAHEGLSPT
110 120 130 140 150
PFMNSNLMGK TSERGSFSLY SRDTGLPGCQ SSLLRQDLGL GSPAQLSSSG
160 170 180 190 200
KPGTAYYSFS ATSSRRRPLH DSAALDPLQA KKVRKVPPGL PSSVYAPSPN
210 220 230 240 250
SDDFNRESPS YPSPKPPTSM FASTFFMQDG THNSSDLWSS SNGMSQPGFG
260 270 280 290 300
GILGTSTSHM SQSSSYGNLH SHDRLSYPPH SVSPTDINTS LPPMSSFHRG
310 320 330 340 350
STSSSPYVAA SHTPPINGSD SILGTRGNAA GSSQTGDALG KALASIYSPD
360 370 380 390 400
HTSSSFPSNP STPVGSPSPL TGTSQWPRPG GQAPSSPSYE NSLHSLQSRM
410 420 430 440 450
EDRLDRLDDA IHVLRNHAVG PSTSLPAGHS DIHSLLGPSH NAPIGSLNSN
460 470 480 490 500
YGGSSLVASS RSASMVGTHR EDSVSLNGNH SVLSSTVTTS STDLNHKTQE
510 520 530 540 550
NYRGGLQSQS GTVVTTEIKT ENKEKDENLH EPPSSDDMKS DDESSQKDIK
560 570 580 590 600
VSSRGRTSST NEDEDLNPEQ KIEREKERRM ANNARERLRV RDINEAFKEL
610 620 630 640 650
GRMCQLHLKS EKPQTKLLIL HQAVAVILSL EQQVRERNLN PKAACLKRRE
660 670 680
EEKVSAVSAE PPTTLPGTHP GLSETTNPMG HM
Computationally mapped potential isoform sequencesi
There are 8 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basketB4DGI9 | B4DGI9_HUMAN | Transcription factor 12 | TCF12 | 666 | Annotation score: | ||
H0YNQ5 | H0YNQ5_HUMAN | Transcription factor 12 | TCF12 | 157 | Annotation score: | ||
F5GY10 | F5GY10_HUMAN | Transcription factor 12 | TCF12 | 536 | Annotation score: | ||
H0YNP8 | H0YNP8_HUMAN | Transcription factor 12 | TCF12 | 339 | Annotation score: | ||
B4DZP2 | B4DZP2_HUMAN | Transcription factor 12 | TCF12 | 316 | Annotation score: | ||
H3BNF4 | H3BNF4_HUMAN | Transcription factor 12 | TCF12 | 48 | Annotation score: | ||
H3BRK2 | H3BRK2_HUMAN | Transcription factor 12 | TCF12 | 44 | Annotation score: | ||
H0YML2 | H0YML2_HUMAN | Transcription factor 12 | TCF12 | 58 | Annotation score: |
Experimental Info
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Sequence conflicti | 523 | K → E in CAD89914 (PubMed:17974005).Curated | 1 |
Natural variant
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Natural variantiVAR_049543 | 300 | G → S. Corresponds to variant dbSNP:rs12442879EnsemblClinVar. | 1 | |
Natural variantiVAR_072271 | 483 | L → R in CRS3. 1 PublicationCorresponds to variant dbSNP:rs36060670Ensembl. | 1 | |
Natural variantiVAR_070096 | 600 | L → P in CRS3. 1 Publication | 1 | |
Natural variantiVAR_070097 | 614 | Q → E in CRS3. 1 PublicationCorresponds to variant dbSNP:rs886037641Ensembl. | 1 |
Alternative sequence
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Alternative sequenceiVSP_039109 | 1 – 170 | Missing in isoform 2. 1 PublicationAdd BLAST | 170 | |
Alternative sequenceiVSP_057419 | 1 – 39 | MNPQQ…KTRPT → MGKRYMHHPQIQMISTVNLL VIHLLSHQPVCSLALSLCK in isoform 4. 1 PublicationAdd BLAST | 39 | |
Alternative sequenceiVSP_057420 | 40 – 275 | Missing in isoform 4. 1 PublicationAdd BLAST | 236 | |
Alternative sequenceiVSP_039110 | 171 – 193 | DSAAL…GLPSS → MYCAYPVPGMGSNSLMYYYN GKT in isoform 2. 1 PublicationAdd BLAST | 23 | |
Alternative sequenceiVSP_040024 | 396 | L → LKNRVEQQLHEHLQDAMSFL KDVCE in isoform 3. 1 Publication | 1 |
Sequence databases
Genome annotation databases
Ensembli | ENST00000267811; ENSP00000267811; ENSG00000140262 [Q99081-1] ENST00000333725; ENSP00000331057; ENSG00000140262 [Q99081-3] ENST00000343827; ENSP00000342459; ENSG00000140262 [Q99081-2] ENST00000438423; ENSP00000388940; ENSG00000140262 [Q99081-3] ENST00000537840; ENSP00000444696; ENSG00000140262 [Q99081-4] ENST00000557843; ENSP00000453737; ENSG00000140262 [Q99081-1] |
GeneIDi | 6938 |
KEGGi | hsa:6938 |
UCSCi | uc002aea.4, human [Q99081-1] uc010ugo.3, human |
Keywords - Coding sequence diversityi
Alternative splicingSimilar proteinsi
Cross-referencesi
Web resourcesi
Atlas of Genetics and Cytogenetics in Oncology and Haematology |
Sequence databases
3D structure databases
Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
2KNH | NMR | - | B | 11-28 | [»] | |
4JOL | X-ray | 2.91 | E/F/G/H | 177-200 | [»] | |
BMRBi | Q99081 | |||||
SMRi | Q99081 | |||||
ModBasei | Search... | |||||
PDBe-KBi | Search... |
Protein-protein interaction databases
BioGRIDi | 112798, 113 interactors |
CORUMi | Q99081 |
DIPi | DIP-29403N |
IntActi | Q99081, 100 interactors |
MINTi | Q99081 |
STRINGi | 9606.ENSP00000388940 |
PTM databases
iPTMneti | Q99081 |
PhosphoSitePlusi | Q99081 |
Genetic variation databases
BioMutai | TCF12 |
DMDMi | 1708332 |
Proteomic databases
EPDi | Q99081 |
jPOSTi | Q99081 |
MassIVEi | Q99081 |
MaxQBi | Q99081 |
PaxDbi | Q99081 |
PeptideAtlasi | Q99081 |
PRIDEi | Q99081 |
ProteomicsDBi | 5790 78231 [Q99081-1] 78232 [Q99081-2] 78233 [Q99081-3] |
Protocols and materials databases
Antibodypediai | 913, 378 antibodies |
DNASUi | 6938 |
Genome annotation databases
Ensembli | ENST00000267811; ENSP00000267811; ENSG00000140262 [Q99081-1] ENST00000333725; ENSP00000331057; ENSG00000140262 [Q99081-3] ENST00000343827; ENSP00000342459; ENSG00000140262 [Q99081-2] ENST00000438423; ENSP00000388940; ENSG00000140262 [Q99081-3] ENST00000537840; ENSP00000444696; ENSG00000140262 [Q99081-4] ENST00000557843; ENSP00000453737; ENSG00000140262 [Q99081-1] |
GeneIDi | 6938 |
KEGGi | hsa:6938 |
UCSCi | uc002aea.4, human [Q99081-1] uc010ugo.3, human |
Organism-specific databases
CTDi | 6938 |
DisGeNETi | 6938 |
GeneCardsi | TCF12 |
HGNCi | HGNC:11623, TCF12 |
HPAi | ENSG00000140262, Tissue enhanced (lymphoid) |
MalaCardsi | TCF12 |
MIMi | 600480, gene 615314, phenotype |
neXtProti | NX_Q99081 |
OpenTargetsi | ENSG00000140262 |
Orphaneti | 209916, Extraskeletal myxoid chondrosarcoma 35099, Isolated brachycephaly 35098, Isolated plagiocephaly |
PharmGKBi | PA36381 |
VEuPathDBi | HostDB:ENSG00000140262.17 |
GenAtlasi | Search... |
Phylogenomic databases
eggNOGi | KOG3910, Eukaryota |
GeneTreei | ENSGT00940000155047 |
HOGENOMi | CLU_021099_2_0_1 |
InParanoidi | Q99081 |
OMAi | RYADEDC |
OrthoDBi | 571132at2759 |
PhylomeDBi | Q99081 |
TreeFami | TF321672 |
Enzyme and pathway databases
PathwayCommonsi | Q99081 |
Reactomei | R-HSA-525793, Myogenesis R-HSA-8939236, RUNX1 regulates transcription of genes involved in differentiation of HSCs R-HSA-9031628, NGF-stimulated transcription |
SIGNORi | Q99081 |
Miscellaneous databases
BioGRID-ORCSi | 6938, 13 hits in 1023 CRISPR screens |
ChiTaRSi | TCF12, human |
EvolutionaryTracei | Q99081 |
GeneWikii | TCF12 |
GenomeRNAii | 6938 |
Pharosi | Q99081, Tbio |
PROi | PR:Q99081 |
RNActi | Q99081, protein |
SOURCEi | Search... |
Gene expression databases
Bgeei | ENSG00000140262, Expressed in corpus callosum and 245 other tissues |
ExpressionAtlasi | Q99081, baseline and differential |
Genevisiblei | Q99081, HS |
Family and domain databases
Gene3Di | 4.10.280.10, 1 hit |
IDEALi | IID00222 |
InterProi | View protein in InterPro IPR011598, bHLH_dom IPR036638, HLH_DNA-bd_sf |
Pfami | View protein in Pfam PF00010, HLH, 1 hit |
SMARTi | View protein in SMART SM00353, HLH, 1 hit |
SUPFAMi | SSF47459, SSF47459, 1 hit |
PROSITEi | View protein in PROSITE PS50888, BHLH, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | HTF4_HUMAN | |
Accessioni | Q99081Primary (citable) accession number: Q99081 Secondary accession number(s): B4E1W1 Q86VM2 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | October 1, 1996 |
Last sequence update: | October 1, 1996 | |
Last modified: | April 7, 2021 | |
This is version 193 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Chordata Protein Annotation Program | |
Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. |
Miscellaneousi
Keywords - Technical termi
3D-structure, Reference proteomeDocuments
- Human chromosome 15
Human chromosome 15: entries, gene names and cross-references to MIM - Human entries with genetic variants
List of human entries with genetic variants - Human variants curated from literature reports
Index of human variants curated from literature reports - MIM cross-references
Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot - PDB cross-references
Index of Protein Data Bank (PDB) cross-references