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UniProtKB - Q98PR0 (Q98PR0_MYCPU)

Entry version 99 (02 Dec 2020)
Sequence version 1 (01 Oct 2001)
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Protein
Submitted name:

PROTEIN-EXPORT MEMBRANE PROTEIN SECD

Gene

MYPU_6590

Organism
Mycoplasma pulmonis (strain UAB CTIP)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processProtein transport, TranslocationARBA annotation, Transport

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
PROTEIN-EXPORT MEMBRANE PROTEIN SECDImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:MYPU_6590Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMycoplasma pulmonis (strain UAB CTIP)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri272635 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Tenericutes › Mollicutes › Mycoplasmataceae › Mycoplasma ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000528 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei340 – 360HelicalSequence analysisAdd BLAST21
Transmembranei367 – 387HelicalSequence analysisAdd BLAST21
Transmembranei393 – 417HelicalSequence analysisAdd BLAST25
Transmembranei437 – 460HelicalSequence analysisAdd BLAST24
Transmembranei466 – 485HelicalSequence analysisAdd BLAST20
Transmembranei534 – 556HelicalSequence analysisAdd BLAST23
Transmembranei679 – 696HelicalSequence analysisAdd BLAST18
Transmembranei703 – 724HelicalSequence analysisAdd BLAST22
Transmembranei730 – 751HelicalSequence analysisAdd BLAST22
Transmembranei788 – 806HelicalSequence analysisAdd BLAST19
Transmembranei812 – 836HelicalSequence analysisAdd BLAST25

GO - Cellular componenti

Complete GO annotation on QuickGO ...

Keywords - Cellular componenti

Cell membraneARBA annotation, Membrane

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		272635.MYPU_6590

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili591 – 611Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis, Transmembrane, Transmembrane helixSequence analysisARBA annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		COG0341, Bacteria
COG0342, Bacteria

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_007894_3_1_14

Identification of Orthologs from Complete Genome Data

More...OMAi		QTFANIN

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR022813, SecD/SecF_arch_bac
IPR022645, SecD/SecF_bac
IPR005665, SecF_bac

The PANTHER Classification System

More...PANTHERi		PTHR30081, PTHR30081, 2 hits

Pfam protein domain database

More...Pfami		View protein in Pfam
PF02355, SecD_SecF, 2 hits

Protein Motif fingerprint database; a protein domain database

More...PRINTSi		PR01755, SECFTRNLCASE

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR00966, 3a0501s07, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q98PR0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MNMKEFFKKI FSLTNPKRWF IVFLITITTV LSVSIGSSLY VAPNVNKSID 
        60         70         80         90        100
YGGGIESLIQ VRNAKGENAD ENLTSQVSNS LHQRLTGGAG VNGSNVSVEG 
       110        120        130        140        150
GGKIRISSTG VSSDDDKKKF EDSIVKKPSL ILTDVNSNPI FQDGFFNPNI 
       160        170        180        190        200
RLDYSKPEEI EWHRYVAPIK ESSARDLPDP SRPGNSIVQI GLKNQDAITE 
       210        220        230        240        250
FAKATDYISK SRIPTLLFWL DLKGLVEKGQ LAENAADWEA SGQRPYNFVF 
       260        270        280        290        300
NGNRPFEIDR RVNRLIPNAK RESRLNVSSF LLSEANVRQA LNAETFIITG 
       310        320        330        340        350
NLTASSAKQL ALDVNFGSGD YTLELLSSRF VDATLGTQSF NYAIIAGIIS 
       360        370        380        390        400
FIVIALIMIY NYGVLGIASS LSIGLYIFLS LTVFTWLNGE YSPATIAALV 
       410        420        430        440        450
IAIGMSVDAN IITFERIKQQ LKYGDSLKKA TKNAHRFSLS TILDSNITTL 
       460        470        480        490        500
IVSGILFYFG TKLIRGFSIS LILSIIFILF VMLIITRMAT SLLIGTGFFD 
       510        520        530        540        550
NRLYLIGVGR SFFTKEKKII TFFEKLNYFK LSKWFILFFG VFVLIAIIIY 
       560        570        580        590        600
SIFAGINGNF LSGFERSLEF QGGTNISFEK SSIDNLSLAE AQEIKNTLVN 
       610        620        630        640        650
LKNTANGSEN LITSGAQDIF INAKNQARSN YVVSLQTKQV FDQDQINYII 
       660        670        680        690        700
QEVSKTFSNI SSTPFIVSTN EASSLVKNSI VSISIGIVGI VLYTIFRLKW 
       710        720        730        740        750
TFSIAAIVAL LHDIVFVIAF FIIFRLEISP IFVAAILSII GYSINDTIVT 
       760        770        780        790        800
FDRIKEIMHS EYYHQKIDQK VLINITNKAI KDTIKRSMLT TITTLVTIVV 
       810        820        830        840        850
LLSFRGSTEV NFNIALFVGL ISGTYSSIFI ASWLFVKLET FRQKMIRRRK 
       860        870 
ANNFWSVGFV EEQTFNGIND FVS
Length:873
Mass (Da):97,334
Last modified:October 1, 2001 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i02B06BB39DDF9231
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AL445565 Genomic DNA Translation: CAC13832.1

Protein sequence database of the Protein Information Resource

More...PIRi		C90594

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		CAC13832; CAC13832; CAC13832

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		mpu:MYPU_6590

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL445565 Genomic DNA Translation: CAC13832.1
PIRiC90594

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

STRINGi272635.MYPU_6590

Genome annotation databases

EnsemblBacteriaiCAC13832; CAC13832; CAC13832
KEGGimpu:MYPU_6590

Phylogenomic databases

eggNOGiCOG0341, Bacteria
COG0342, Bacteria
HOGENOMiCLU_007894_3_1_14
OMAiQTFANIN

Family and domain databases

InterProiView protein in InterPro
IPR022813, SecD/SecF_arch_bac
IPR022645, SecD/SecF_bac
IPR005665, SecF_bac
PANTHERiPTHR30081, PTHR30081, 2 hits
PfamiView protein in Pfam
PF02355, SecD_SecF, 2 hits
PRINTSiPR01755, SECFTRNLCASE
TIGRFAMsiTIGR00966, 3a0501s07, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ98PR0_MYCPU
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q98PR0
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 1, 2001
Last sequence update: October 1, 2001
Last modified: December 2, 2020
This is version 99 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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