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Protein

30S ribosomal protein S13

Gene

rpsM

Organism
Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding, tRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S13UniRule annotation
Gene namesi
Name:rpsMUniRule annotation
Ordered Locus Names:CA_C3107
OrganismiClostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
Taxonomic identifieri272562 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridium
Proteomesi
  • UP000000814 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001320821 – 12330S ribosomal protein S13Add BLAST123

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome.UniRule annotation

Protein-protein interaction databases

STRINGi272562.CA_C3107

Structurei

3D structure databases

ProteinModelPortaliQ97EK3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uS13 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108Z04 Bacteria
COG0099 LUCA
HOGENOMiHOG000039879
KOiK02952
OMAiRTKNNSR

Family and domain databases

Gene3Di4.10.910.10, 1 hit
HAMAPiMF_01315 Ribosomal_S13_S18, 1 hit
InterProiView protein in InterPro
IPR027437 30s_Rbsml_prot_S13_C
IPR001892 Ribosomal_S13
IPR010979 Ribosomal_S13-like_H2TH
IPR019980 Ribosomal_S13_bac-type
IPR018269 Ribosomal_S13_CS
PANTHERiPTHR10871:SF1 PTHR10871:SF1, 1 hit
PfamiView protein in Pfam
PF00416 Ribosomal_S13, 1 hit
PIRSFiPIRSF002134 Ribosomal_S13, 1 hit
SUPFAMiSSF46946 SSF46946, 1 hit
TIGRFAMsiTIGR03631 uS13_bact, 1 hit
PROSITEiView protein in PROSITE
PS00646 RIBOSOMAL_S13_1, 1 hit
PS50159 RIBOSOMAL_S13_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q97EK3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARIAGIDLP KEKRVEIGLT YIYGIGLTSS RKIIKATSVN PETRVKDLTE
60 70 80 90 100
EEVNALRDYI NKNFKIEGDL RREVALNIKR LVEIGCYRGI RHRRGLPVRG
110 120
QKTKTNARTR KGPKKAVASK KKK
Length:123
Mass (Da):14,000
Last modified:October 1, 2001 - v1
Checksum:i4E4EC04134D7BE83
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE001437 Genomic DNA Translation: AAK81047.1
PIRiD97282
RefSeqiNP_349707.1, NC_003030.1
WP_010966388.1, NC_003030.1

Genome annotation databases

EnsemblBacteriaiAAK81047; AAK81047; CA_C3107
GeneIDi1119290
KEGGicac:CA_C3107
PATRICifig|272562.8.peg.3290

Similar proteinsi

Entry informationi

Entry nameiRS13_CLOAB
AccessioniPrimary (citable) accession number: Q97EK3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 27, 2003
Last sequence update: October 1, 2001
Last modified: February 28, 2018
This is version 91 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

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