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UniProtKB - Q96RD9 (FCRL5_HUMAN)

Protein

Fc receptor-like protein 5

Gene

FCRL5

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

May be involved in B-cell development and differentiation in peripheral lymphoid organs and may be useful markers of B-cell stages. May have an immunoregulatory role in marginal zone B-cells.1 Publication

Keywordsi

Molecular functionReceptor

Names & Taxonomyi

Protein namesi
Recommended name:
Fc receptor-like protein 5
Short name:
FcR-like protein 5
Short name:
FcRL5
Alternative name(s):
BXMAS1
Fc receptor homolog 5
Short name:
FcRH5
Immune receptor translocation-associated protein 2
CD_antigen: CD307e
Gene namesi
Name:FCRL5
Synonyms:FCRH5, IRTA2
ORF Names:UNQ503/PRO820
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo
Proteomesi
  • UP000005640 Componenti: Chromosome 1

Organism-specific databases

EuPathDBiHostDB:ENSG00000143297.18
HGNCiHGNC:18508 FCRL5
MIMi605877 gene
neXtProtiNX_Q96RD9

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini16 – 851ExtracellularSequence analysisAdd BLAST836
Transmembranei852 – 872HelicalSequence analysisAdd BLAST21
Topological domaini873 – 977CytoplasmicSequence analysisAdd BLAST105

Keywords - Cellular componenti

Cell membrane, Membrane

Pathology & Biotechi

Involvement in diseasei

A chromosomal aberration involving FCRL5 has been found in cell lines with 1q21 abnormalities derived from Burkitt lymphoma. Duplication dup(1)(q21q32).1 Publication

Organism-specific databases

DisGeNETi83416
OpenTargetsiENSG00000143297
PharmGKBiPA142671769

Polymorphism and mutation databases

BioMutaiFCRL5
DMDMi296439341

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 15Sequence analysisAdd BLAST15
ChainiPRO_000022562216 – 977Fc receptor-like protein 5Add BLAST962

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi44 ↔ 85PROSITE-ProRule annotation
Disulfide bondi211 ↔ 260PROSITE-ProRule annotation
Disulfide bondi308 ↔ 355PROSITE-ProRule annotation
Glycosylationi383N-linked (GlcNAc...) asparagineSequence analysis1
Disulfide bondi401 ↔ 448PROSITE-ProRule annotation
Disulfide bondi494 ↔ 541PROSITE-ProRule annotation
Disulfide bondi587 ↔ 634PROSITE-ProRule annotation
Disulfide bondi680 ↔ 727PROSITE-ProRule annotation
Disulfide bondi773 ↔ 819PROSITE-ProRule annotation

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PaxDbiQ96RD9
PeptideAtlasiQ96RD9
PRIDEiQ96RD9
ProteomicsDBi77948
77949 [Q96RD9-2]
77950 [Q96RD9-3]
77951 [Q96RD9-4]
77952 [Q96RD9-5]

PTM databases

iPTMnetiQ96RD9
PhosphoSitePlusiQ96RD9

Expressioni

Tissue specificityi

Expressed in marginal zone B-cells, immunoblasts, tonsillar germinal center centrocytes and in the intraepithelial and interfollicular regions of the tonsil. Expressed in many lymphoma cell lines and on hairy cell leukemia cells. Isoform 1, isoform 3, isoform 4 and isoform 5 are detected in lymph node, spleen, bone marrow, and small intestine with preponderance of isoform 3. Expressed in mature and memory B-cells and down-regulated in germinal center cells (at protein level).3 Publications

Gene expression databases

BgeeiENSG00000143297 Expressed in 105 organ(s), highest expression level in spleen
CleanExiHS_FCRL5
GenevisibleiQ96RD9 HS

Interactioni

Protein-protein interaction databases

BioGridi123640, 9 interactors
IntActiQ96RD9, 3 interactors
STRINGi9606.ENSP00000354691

Structurei

3D structure databases

ProteinModelPortaliQ96RD9
SMRiQ96RD9
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini23 – 101Ig-like C2-type 1Add BLAST79
Domaini188 – 271Ig-like C2-type 2Add BLAST84
Domaini287 – 374Ig-like C2-type 3Add BLAST88
Domaini380 – 463Ig-like C2-type 4Add BLAST84
Domaini473 – 556Ig-like C2-type 5Add BLAST84
Domaini566 – 651Ig-like C2-type 6Add BLAST86
Domaini659 – 744Ig-like C2-type 7Add BLAST86
Domaini752 – 834Ig-like C2-type 8Add BLAST83

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi897 – 902ITIM motif 16
Motifi910 – 915ITIM motif 26
Motifi922 – 927ITIM motif 36
Motifi952 – 957ITIM motif 46

Domaini

Contains 2 copies of a cytoplasmic motif that is referred to as the immunoreceptor tyrosine-based inhibitor motif (ITIM).By similarity

Keywords - Domaini

Immunoglobulin domain, Repeat, Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410IH5T Eukaryota
ENOG410YF57 LUCA
GeneTreeiENSGT00760000119130
HOVERGENiHBG074073
InParanoidiQ96RD9
KOiK06727
OMAiHKSVRCE
OrthoDBiEOG091G03OP
PhylomeDBiQ96RD9
TreeFamiTF351107

Family and domain databases

Gene3Di2.60.40.10, 9 hits
InterProiView protein in InterPro
IPR007110 Ig-like_dom
IPR036179 Ig-like_dom_sf
IPR013783 Ig-like_fold
IPR003599 Ig_sub
IPR003598 Ig_sub2
PfamiView protein in Pfam
PF13895 Ig_2, 7 hits
SMARTiView protein in SMART
SM00409 IG, 9 hits
SM00408 IGc2, 8 hits
SUPFAMiSSF48726 SSF48726, 9 hits
PROSITEiView protein in PROSITE
PS50835 IG_LIKE, 8 hits

Sequences (5)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 5 isoformsi produced by alternative splicing. AlignAdd to basket
Isoform 1 (identifier: Q96RD9-1) [UniParc]FASTAAdd to basket
Also known as: IRTA2c

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MLLWVILLVL APVSGQFART PRPIIFLQPP WTTVFQGERV TLTCKGFRFY 
        60         70         80         90        100
SPQKTKWYHR YLGKEILRET PDNILEVQES GEYRCQAQGS PLSSPVHLDF 
       110        120        130        140        150
SSASLILQAP LSVFEGDSVV LRCRAKAEVT LNNTIYKNDN VLAFLNKRTD 
       160        170        180        190        200
FHIPHACLKD NGAYRCTGYK ESCCPVSSNT VKIQVQEPFT RPVLRASSFQ 
       210        220        230        240        250
PISGNPVTLT CETQLSLERS DVPLRFRFFR DDQTLGLGWS LSPNFQITAM 
       260        270        280        290        300
WSKDSGFYWC KAATMPYSVI SDSPRSWIQV QIPASHPVLT LSPEKALNFE 
       310        320        330        340        350
GTKVTLHCET QEDSLRTLYR FYHEGVPLRH KSVRCERGAS ISFSLTTENS 
       360        370        380        390        400
GNYYCTADNG LGAKPSKAVS LSVTVPVSHP VLNLSSPEDL IFEGAKVTLH 
       410        420        430        440        450
CEAQRGSLPI LYQFHHEGAA LERRSANSAG GVAISFSLTA EHSGNYYCTA 
       460        470        480        490        500
DNGFGPQRSK AVSLSVTVPV SHPVLTLSSA EALTFEGATV TLHCEVQRGS 
       510        520        530        540        550
PQILYQFYHE DMPLWSSSTP SVGRVSFSFS LTEGHSGNYY CTADNGFGPQ 
       560        570        580        590        600
RSEVVSLFVT VPVSRPILTL RVPRAQAVVG DLLELHCEAP RGSPPILYWF 
       610        620        630        640        650
YHEDVTLGSS SAPSGGEASF NLSLTAEHSG NYSCEANNGL VAQHSDTISL 
       660        670        680        690        700
SVIVPVSRPI LTFRAPRAQA VVGDLLELHC EALRGSSPIL YWFYHEDVTL 
       710        720        730        740        750
GKISAPSGGG ASFNLSLTTE HSGIYSCEAD NGLEAQRSEM VTLKVAVPVS 
       760        770        780        790        800
RPVLTLRAPG THAAVGDLLE LHCEALRGSP LILYRFFHED VTLGNRSSPS 
       810        820        830        840        850
GGASLNLSLT AEHSGNYSCE ADNGLGAQRS ETVTLYITGL TANRSGPFAT 
       860        870        880        890        900
GVAGGLLSIA GLAAGALLLY CWLSRKAGRK PASDPARSPS DSDSQEPTYH 
       910        920        930        940        950
NVPAWEELQP VYTNANPRGE NVVYSEVRII QEKKKHAVAS DPRHLRNKGS 
       960        970 
PIIYSEVKVA STPVSGSLFL ASSAPHR
Length:977
Mass (Da):106,437
Last modified:May 18, 2010 - v3
Checksum:i9545DA1B6A164FDD
GO
Isoform 2 (identifier: Q96RD9-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     103-124: ASLILQAPLSVFEGDSVVLRCR → EMGFPHAAQANVELLGSSDLLT
     125-977: Missing.

Show »
Length:124
Mass (Da):14,080
Checksum:iD7915849A385455D
GO
Isoform 3 (identifier: Q96RD9-3) [UniParc]FASTAAdd to basket
Also known as: IRTA2a

The sequence of this isoform differs from the canonical sequence as follows:
     747-759: VPVSRPVLTLRAP → GEWALPTSSTSEN
     760-977: Missing.

Show »
Length:759
Mass (Da):83,293
Checksum:i11903D6E89081BC9
GO
Isoform 4 (identifier: Q96RD9-4) [UniParc]FASTAAdd to basket
Also known as: IRTA2b

The sequence of this isoform differs from the canonical sequence as follows:
     561-592: VPVSRPILTLRVPRAQAVVGDLLELHCEAPRG → GKCWVLASHPPLAEFSLTHSFKNLFALSSFLP
     593-977: Missing.

Show »
Length:592
Mass (Da):65,617
Checksum:iD99E9511BC528621
GO
Isoform 5 (identifier: Q96RD9-5) [UniParc]FASTAAdd to basket
Also known as: IRTA2d

The sequence of this isoform differs from the canonical sequence as follows:
     152-152: H → Q
     153-977: Missing.

Show »
Length:152
Mass (Da):17,377
Checksum:i0437E9CBE8D3792C
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti733L → P in AAK50059 (PubMed:11453668).Curated1
Sequence conflicti890S → P in AAK50059 (PubMed:11453668).Curated1

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural variantiVAR_025447267Y → H4 PublicationsCorresponds to variant dbSNP:rs6679793Ensembl.1
Natural variantiVAR_025448269V → I2 PublicationsCorresponds to variant dbSNP:rs12036228Ensembl.1
Natural variantiVAR_025449418G → D5 PublicationsCorresponds to variant dbSNP:rs2012199Ensembl.1
Natural variantiVAR_056044427N → K. Corresponds to variant dbSNP:rs16838748Ensembl.1
Natural variantiVAR_056045457Q → R. Corresponds to variant dbSNP:rs34868810Ensembl.1
Natural variantiVAR_025450466V → I5 PublicationsCorresponds to variant dbSNP:rs6427384Ensembl.1
Natural variantiVAR_035514687S → C in a breast cancer sample; somatic mutation. 1 Publication1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_017379103 – 124ASLIL…VLRCR → EMGFPHAAQANVELLGSSDL LT in isoform 2. 2 PublicationsAdd BLAST22
Alternative sequenceiVSP_017380125 – 977Missing in isoform 2. 2 PublicationsAdd BLAST853
Alternative sequenceiVSP_017381152H → Q in isoform 5. 1 Publication1
Alternative sequenceiVSP_017382153 – 977Missing in isoform 5. 1 PublicationAdd BLAST825
Alternative sequenceiVSP_017383561 – 592VPVSR…EAPRG → GKCWVLASHPPLAEFSLTHS FKNLFALSSFLP in isoform 4. 1 PublicationAdd BLAST32
Alternative sequenceiVSP_017384593 – 977Missing in isoform 4. 1 PublicationAdd BLAST385
Alternative sequenceiVSP_017385747 – 759VPVSR…TLRAP → GEWALPTSSTSEN in isoform 3. 1 PublicationAdd BLAST13
Alternative sequenceiVSP_017386760 – 977Missing in isoform 3. 1 PublicationAdd BLAST218

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF369794 mRNA Translation: AAK50059.2
AF343662 mRNA Translation: AAK31325.1
AF343663 mRNA Translation: AAK31326.1
AF343664 mRNA Translation: AAK31327.1
AF343665 mRNA Translation: AAK31328.1
AF397453 mRNA Translation: AAK93971.1
AY358085 mRNA Translation: AAQ88452.1
AL834187 mRNA Translation: CAH56486.1
EF064730 Genomic DNA Translation: ABK41913.1
AL135929 Genomic DNA No translation available.
AL353899 Genomic DNA No translation available.
BC101066 mRNA Translation: AAI01067.1
BC101067 mRNA Translation: AAI01068.1
BC101069 mRNA Translation: AAI01070.1
CCDSiCCDS1165.1 [Q96RD9-1]
RefSeqiNP_001182317.1, NM_001195388.1
NP_112571.2, NM_031281.2 [Q96RD9-1]
UniGeneiHs.415950

Genome annotation databases

EnsembliENST00000361835; ENSP00000354691; ENSG00000143297 [Q96RD9-1]
ENST00000368189; ENSP00000357172; ENSG00000143297 [Q96RD9-4]
ENST00000368190; ENSP00000357173; ENSG00000143297 [Q96RD9-3]
GeneIDi83416
KEGGihsa:83416
UCSCiuc001fqu.3 human [Q96RD9-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF369794 mRNA Translation: AAK50059.2
AF343662 mRNA Translation: AAK31325.1
AF343663 mRNA Translation: AAK31326.1
AF343664 mRNA Translation: AAK31327.1
AF343665 mRNA Translation: AAK31328.1
AF397453 mRNA Translation: AAK93971.1
AY358085 mRNA Translation: AAQ88452.1
AL834187 mRNA Translation: CAH56486.1
EF064730 Genomic DNA Translation: ABK41913.1
AL135929 Genomic DNA No translation available.
AL353899 Genomic DNA No translation available.
BC101066 mRNA Translation: AAI01067.1
BC101067 mRNA Translation: AAI01068.1
BC101069 mRNA Translation: AAI01070.1
CCDSiCCDS1165.1 [Q96RD9-1]
RefSeqiNP_001182317.1, NM_001195388.1
NP_112571.2, NM_031281.2 [Q96RD9-1]
UniGeneiHs.415950

3D structure databases

ProteinModelPortaliQ96RD9
SMRiQ96RD9
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi123640, 9 interactors
IntActiQ96RD9, 3 interactors
STRINGi9606.ENSP00000354691

PTM databases

iPTMnetiQ96RD9
PhosphoSitePlusiQ96RD9

Polymorphism and mutation databases

BioMutaiFCRL5
DMDMi296439341

Proteomic databases

PaxDbiQ96RD9
PeptideAtlasiQ96RD9
PRIDEiQ96RD9
ProteomicsDBi77948
77949 [Q96RD9-2]
77950 [Q96RD9-3]
77951 [Q96RD9-4]
77952 [Q96RD9-5]

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000361835; ENSP00000354691; ENSG00000143297 [Q96RD9-1]
ENST00000368189; ENSP00000357172; ENSG00000143297 [Q96RD9-4]
ENST00000368190; ENSP00000357173; ENSG00000143297 [Q96RD9-3]
GeneIDi83416
KEGGihsa:83416
UCSCiuc001fqu.3 human [Q96RD9-1]

Organism-specific databases

CTDi83416
DisGeNETi83416
EuPathDBiHostDB:ENSG00000143297.18
GeneCardsiFCRL5
HGNCiHGNC:18508 FCRL5
MIMi605877 gene
neXtProtiNX_Q96RD9
OpenTargetsiENSG00000143297
PharmGKBiPA142671769
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410IH5T Eukaryota
ENOG410YF57 LUCA
GeneTreeiENSGT00760000119130
HOVERGENiHBG074073
InParanoidiQ96RD9
KOiK06727
OMAiHKSVRCE
OrthoDBiEOG091G03OP
PhylomeDBiQ96RD9
TreeFamiTF351107

Miscellaneous databases

ChiTaRSiFCRL5 human
GeneWikiiFCRL5
GenomeRNAii83416
PROiPR:Q96RD9
SOURCEiSearch...

Gene expression databases

BgeeiENSG00000143297 Expressed in 105 organ(s), highest expression level in spleen
CleanExiHS_FCRL5
GenevisibleiQ96RD9 HS

Family and domain databases

Gene3Di2.60.40.10, 9 hits
InterProiView protein in InterPro
IPR007110 Ig-like_dom
IPR036179 Ig-like_dom_sf
IPR013783 Ig-like_fold
IPR003599 Ig_sub
IPR003598 Ig_sub2
PfamiView protein in Pfam
PF13895 Ig_2, 7 hits
SMARTiView protein in SMART
SM00409 IG, 9 hits
SM00408 IGc2, 8 hits
SUPFAMiSSF48726 SSF48726, 9 hits
PROSITEiView protein in PROSITE
PS50835 IG_LIKE, 8 hits
ProtoNetiSearch...

Entry informationi

Entry nameiFCRL5_HUMAN
AccessioniPrimary (citable) accession number: Q96RD9
Secondary accession number(s): A0N0M2
, B7WNT9, B7WP94, Q495Q2, Q495Q4, Q5VYK9, Q6UY46
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 7, 2006
Last sequence update: May 18, 2010
Last modified: November 7, 2018
This is version 152 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 1
    Human chromosome 1: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. Human cell differentiation molecules
    CD nomenclature of surface proteins of human leucocytes and list of entries
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