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Entry version 129 (13 Feb 2019)
Sequence version 3 (01 Mar 2004)
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Protein

Xylosyltransferase sqv-6

Gene

sqv-6

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Catalyzes the first step in biosynthesis of glycosaminoglycan. Transfers D-xylose from UDP-D-xylose to specific serine residues of the core protein. Initial enzyme in the biosynthesis of chondroitin sulfate and dermatan sulfate proteoglycans in fibroblasts and chondrocytes. Required for vulval morphogenesis and zygotic cytokinesis, suggesting that glycosaminoglycans play a central role in vulval morphogenesis.1 Publication

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>This subsection of the ‘Function’ section provides information relevant to cofactors. A cofactor is any non-protein substance required for a protein to be catalytically active. Some cofactors are inorganic, such as the metal atoms zinc, iron, and copper in various oxidation states. Others, such as most vitamins, are organic.<p><a href='/help/cofactor' target='_top'>More...</a></p>Cofactori

a divalent metal cationBy similarity

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section describes the metabolic pathway(s) associated with a protein.<p><a href='/help/pathway' target='_top'>More...</a></p>Pathwayi: chondroitin sulfate biosynthesis

This protein is involved in the pathway chondroitin sulfate biosynthesis, which is part of Glycan metabolism.
View all proteins of this organism that are known to be involved in the pathway chondroitin sulfate biosynthesis and in Glycan metabolism.

Pathwayi: heparan sulfate biosynthesis

This protein is involved in the pathway heparan sulfate biosynthesis, which is part of Glycan metabolism.
View all proteins of this organism that are known to be involved in the pathway heparan sulfate biosynthesis and in Glycan metabolism.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Function’ section describes the interaction between a single amino acid and another chemical entity. Priority is given to the annotation of physiological ligands.<p><a href='/help/binding' target='_top'>More...</a></p>Binding sitei264UDP-xyloseBy similarity1
Binding sitei479UDP-xyloseBy similarity1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

  • chondroitin sulfate biosynthetic process Source: WormBase
  • heparan sulfate proteoglycan biosynthetic process Source: UniProtKB-UniPathway
  • heparin biosynthetic process Source: WormBase
  • morphogenesis of an epithelium Source: WormBase
  • oviposition Source: WormBase
  • reproduction Source: WormBase
  • UDP-D-xylose metabolic process Source: WormBase
  • vulval development Source: WormBase

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDevelopmental protein, Glycosyltransferase, Transferase
LigandMetal-binding

Enzyme and pathway databases

BRENDA Comprehensive Enzyme Information System

More...
BRENDAi
2.4.2.26 1045

Reactome - a knowledgebase of biological pathways and processes

More...
Reactomei
R-CEL-1971475 A tetrasaccharide linker sequence is required for GAG synthesis

SignaLink: a signaling pathway resource with multi-layered regulatory networks

More...
SignaLinki
Q965Q8

UniPathway: a resource for the exploration and annotation of metabolic pathways

More...
UniPathwayi
UPA00755

UPA00756

Protein family/group databases

Carbohydrate-Active enZymes

More...
CAZyi
GT14 Glycosyltransferase Family 14

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Xylosyltransferase sqv-6 (EC:2.4.2.261 Publication)
Alternative name(s):
Peptide O-xylosyltransferase
Squashed vulva protein 6
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:sqv-6
ORF Names:Y50D4C.4
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiCaenorhabditis elegans
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri6239 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditinaRhabditomorphaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001940 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome V

Organism-specific databases

WormBase

More...
WormBasei
Y50D4C.4a ; CE35919 ; WBGene00005024 ; sqv-6

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the subcellular compartment where each non-membrane region of a membrane-spanning protein is found.<p><a href='/help/topo_dom' target='_top'>More...</a></p>Topological domaini1 – 11CytoplasmicSequence analysisAdd BLAST11
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei12 – 32Helical; Signal-anchor for type II membrane proteinSequence analysisAdd BLAST21
Topological domaini33 – 806LumenalSequence analysisAdd BLAST774

Keywords - Cellular componenti

Endoplasmic reticulum, Golgi apparatus, Membrane

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the ‘Pathology and Biotech’ section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

Worms are infertile because of the failure of the progeny of homozygous mutants to initiate cytokinesis and because of the failure to form an extracellular space between the egg and the eggshell.1 Publication

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001914131 – 806Xylosyltransferase sqv-6Add BLAST806

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the PTM / Processing":/help/ptm_processing_section section describes the positions of cysteine residues participating in disulfide bonds.<p><a href='/help/disulfid' target='_top'>More...</a></p>Disulfide bondi57 ↔ 85By similarity
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section specifies the position and type of each covalently attached glycan group (mono-, di-, or polysaccharide).<p><a href='/help/carbohyd' target='_top'>More...</a></p>Glycosylationi89N-linked (GlcNAc...) asparagineSequence analysis1
Disulfide bondi101 ↔ 445By similarity
Glycosylationi169N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi325N-linked (GlcNAc...) asparagineSequence analysis1
Disulfide bondi464 ↔ 478By similarity
Disulfide bondi466 ↔ 476By similarity
Glycosylationi614N-linked (GlcNAc...) asparagine1 Publication1
Glycosylationi655N-linked (GlcNAc...) asparagine1 Publication1
Glycosylationi719N-linked (GlcNAc...) asparagineSequence analysis1
Disulfide bondi772 ↔ 778By similarity

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

Encyclopedia of Proteome Dynamics

More...
EPDi
Q965Q8

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q965Q8

PeptideAtlas

More...
PeptideAtlasi
Q965Q8

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q965Q8

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
WBGene00005024 Expressed in 4 organ(s), highest expression level in adult organism

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q965Q8 baseline

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
6239.Y50D4C.4

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...
ProteinModelPortali
Q965Q8

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q965Q8

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini109 – 205WSCPROSITE-ProRule annotationAdd BLAST97

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni293 – 295UDP-xylose bindingBy similarity3
Regioni398 – 399UDP-xylose bindingBy similarity2
Regioni505 – 506UDP-xylose bindingBy similarity2

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Keywords - Domaini

Signal-anchor, Transmembrane, Transmembrane helix

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0799 Eukaryota
KOG4157 Eukaryota
ENOG410XQ7M LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000169133

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q965Q8

KEGG Orthology (KO)

More...
KOi
K00771

Identification of Orthologs from Complete Genome Data

More...
OMAi
TYFARKF

Database of Orthologous Groups

More...
OrthoDBi
564384at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q965Q8

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR003406 Glyco_trans_14
IPR002889 WSC_carb-bd

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF02485 Branch, 1 hit
PF01822 WSC, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00321 WSC, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51212 WSC, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

Q965Q8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLFNGTTKYR DYAIVISLFF LLNVYLLYNT AQHTQVGNSK HISSDSGEKT
60 70 80 90 100
SNPLPSCEIT DDLAKSAISR AITPSCKAKL QLEACQLKNG TFTINFPENQ
110 120 130 140 150
CPNHDSRLID QRIGCFLDKK EARVLTEFEY KLPKSNGKAT CRKHCYKAGF
160 170 180 190 200
LYFGLEFGHE CFCGNDVSNA TAVDDVECRA YKCPGNENSE EFCGGFNAVE
210 220 230 240 250
IFRTGFRSKV NHRKPTYLPP SSDSIKNPVK ILFLLQLNGR NERQVKRFLK
260 270 280 290 300
SIYLPHHYYY IHVDARQNYM FSEMQKVADF LDNIHITERR FSTIWGGASL
310 320 330 340 350
LQMFLQVIRD SMKIEKFKDW DYIINFSESD FPILPISDFE RLITVNNGKS
360 370 380 390 400
FLASHGYNTG KFIQKQGFEY VFSECDNRMF RIGKREFPQN LRIDGGSDWV
410 420 430 440 450
GIHRNLAEFS ISDEELPRKL RKTYESILLP LESFYHTLAF NSEFCDDLLM
460 470 480 490 500
SNLRLTNWYR KQGCRCASLK PIVDWCGCSP LVFREETMKK FELQKAISKP
510 520 530 540 550
TYFARKFDSM VDIDSIEAAE MQSISPEKLQ LNHPTYHFAF ANIFKTGIDE
560 570 580 590 600
QKLHFESLAN FALKSTETRA KFRKVLRIDA LRAHHNALIE IVMKIETTDG
610 620 630 640 650
ATFEFLIHRL SHVNLTENEE KLVEHGYLLR AVSFGTKFEW KEELCREYMG
660 670 680 690 700
FVTDNDTLHT RLQWHPTEHV KKVGDKTSPE MIFKYRKGDE LIEQTVVKPY
710 720 730 740 750
DSVFGGQFDS WNVGKKLSNL TTCSNFFVDI ISPSSPDDAP PLATLHFPVY
760 770 780 790 800
TDQNAHCHVD YLRQFFKIAD FCTSGDACKE KIWSTSYPDP KSDIFVGYDE

DTQTLI
Length:806
Mass (Da):93,115
Last modified:March 1, 2004 - v3
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i6EF779BEA4B570CB
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A0K3AYD4A0A0K3AYD4_CAEEL
Xylosyltransferase sqv-6
sqv-6 CELE_Y50D4C.4, Y50D4C.4
428Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A0K3AT40A0A0K3AT40_CAEEL
Xylosyltransferase sqv-6
sqv-6 CELE_Y50D4C.4, Y50D4C.4
126Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AY241928 mRNA Translation: AAO85277.1
AJ496235 mRNA Translation: CAD42732.1
FO081564 Genomic DNA Translation: CCD72442.1

NCBI Reference Sequences

More...
RefSeqi
NP_503359.2, NM_070958.3

UniGene gene-oriented nucleotide sequence clusters

More...
UniGenei
Cel.1679

Genome annotation databases

Ensembl metazoan genome annotation project

More...
EnsemblMetazoai
Y50D4C.4a.1; Y50D4C.4a.1; WBGene00005024
Y50D4C.4a.2; Y50D4C.4a.2; WBGene00005024

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
190099

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
cel:CELE_Y50D4C.4

UCSC genome browser

More...
UCSCi
Y50D4C.4 c. elegans

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY241928 mRNA Translation: AAO85277.1
AJ496235 mRNA Translation: CAD42732.1
FO081564 Genomic DNA Translation: CCD72442.1
RefSeqiNP_503359.2, NM_070958.3
UniGeneiCel.1679

3D structure databases

ProteinModelPortaliQ965Q8
SMRiQ965Q8
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.Y50D4C.4

Protein family/group databases

CAZyiGT14 Glycosyltransferase Family 14

PTM databases

iPTMnetiQ965Q8

Proteomic databases

EPDiQ965Q8
PaxDbiQ965Q8
PeptideAtlasiQ965Q8

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiY50D4C.4a.1; Y50D4C.4a.1; WBGene00005024
Y50D4C.4a.2; Y50D4C.4a.2; WBGene00005024
GeneIDi190099
KEGGicel:CELE_Y50D4C.4
UCSCiY50D4C.4 c. elegans

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
190099
WormBaseiY50D4C.4a ; CE35919 ; WBGene00005024 ; sqv-6

Phylogenomic databases

eggNOGiKOG0799 Eukaryota
KOG4157 Eukaryota
ENOG410XQ7M LUCA
GeneTreeiENSGT00940000169133
InParanoidiQ965Q8
KOiK00771
OMAiTYFARKF
OrthoDBi564384at2759
PhylomeDBiQ965Q8

Enzyme and pathway databases

UniPathwayi
UPA00755

UPA00756

BRENDAi2.4.2.26 1045
ReactomeiR-CEL-1971475 A tetrasaccharide linker sequence is required for GAG synthesis
SignaLinkiQ965Q8

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q965Q8

Gene expression databases

BgeeiWBGene00005024 Expressed in 4 organ(s), highest expression level in adult organism
ExpressionAtlasiQ965Q8 baseline

Family and domain databases

InterProiView protein in InterPro
IPR003406 Glyco_trans_14
IPR002889 WSC_carb-bd
PfamiView protein in Pfam
PF02485 Branch, 1 hit
PF01822 WSC, 1 hit
SMARTiView protein in SMART
SM00321 WSC, 1 hit
PROSITEiView protein in PROSITE
PS51212 WSC, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiXYLT_CAEEL
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q965Q8
Secondary accession number(s): Q867S3
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 10, 2005
Last sequence update: March 1, 2004
Last modified: February 13, 2019
This is version 129 of the entry and version 3 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  3. PATHWAY comments
    Index of metabolic and biosynthesis pathways
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