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Entry version 154 (02 Dec 2020)
Sequence version 2 (14 Aug 2001)
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Protein

S-adenosylmethionine decarboxylase proenzyme 1

Gene

SAMDC1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Essential for biosynthesis of the polyamines spermidine and spermine. Essential for polyamine homeostasis, and normal plant embryogenesis, growth and development.1 Publication

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>This subsection of the 'Function' section provides information relevant to cofactors. A cofactor is any non-protein substance required for a protein to be catalytically active. Some cofactors are inorganic, such as the metal atoms zinc, iron, and copper in various oxidation states. Others, such as most vitamins, are organic.<p><a href='/help/cofactor' target='_top'>More...</a></p>Cofactori

pyruvateBy similarityNote: Binds 1 pyruvoyl group covalently per subunit.By similarity

<p>This subsection of the 'Function' section describes biophysical and chemical properties, such as maximal absorption, kinetic parameters, pH dependence, redox potentials and temperature dependence.<p><a href='/help/biophysicochemical_properties' target='_top'>More...</a></p>Kineticsi

  1. KM=23.1 µM for S-adenosyl-L-methionine1 Publication

    pH dependencei

    Optimum pH is 6.8-7.2.1 Publication

    <p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section describes the metabolic pathway(s) associated with a protein.<p><a href='/help/pathway' target='_top'>More...</a></p>Pathwayi: S-adenosylmethioninamine biosynthesis

    This protein is involved in step 1 of the subpathway that synthesizes S-adenosylmethioninamine from S-adenosyl-L-methionine.Curated
    Proteins known to be involved in this subpathway in this organism are:
    1. S-adenosylmethionine decarboxylase proenzyme 4 (SAMDC4), Uncharacterized protein (At3g17717), (thale cress) hypothetical protein (AT9943_LOCUS11324), S-adenosylmethionine decarboxylase proenzyme (AXX17_At5g18760), S-adenosylmethionine decarboxylase proenzyme (AN1_LOCUS14019), S-adenosylmethionine decarboxylase proenzyme (At3g17717), S-adenosylmethionine decarboxylase proenzyme (AT9943_LOCUS12031), S-adenosylmethionine decarboxylase proenzyme (AXX17_At3g27520), S-adenosylmethionine decarboxylase proenzyme 3 (SAMDC3), S-adenosylmethionine decarboxylase proenzyme (AXX17_At5g15520), S-adenosylmethionine decarboxylase proenzyme 2 (SAMDC2), Uncharacterized protein (AN1_LOCUS13172), S-adenosylmethionine decarboxylase proenzyme 1 (SAMDC1), S-adenosylmethionine decarboxylase proenzyme (AT9943_LOCUS19261), Uncharacterized protein, S-adenosylmethionine decarboxylase proenzyme (AXX17_At3g01690), S-adenosylmethionine decarboxylase proenzyme, S-adenosylmethionine decarboxylase proenzyme (C24_LOCUS22263)
    This subpathway is part of the pathway S-adenosylmethioninamine biosynthesis, which is itself part of Amine and polyamine biosynthesis.
    View all proteins of this organism that are known to be involved in the subpathway that synthesizes S-adenosylmethioninamine from S-adenosyl-L-methionine, the pathway S-adenosylmethioninamine biosynthesis and in Amine and polyamine biosynthesis.

    Sites

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    <p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei9By similarity1
    Active sitei12By similarity1
    <p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the interaction between a single amino acid and another chemical entity. Priority is given to the annotation of physiological ligands.<p><a href='/help/binding' target='_top'>More...</a></p>Binding sitei68SubstrateBy similarity1
    Active sitei69Schiff-base intermediate with substrate; via pyruvic acidBy similarity1
    Active sitei83Proton donor; for catalytic activityBy similarity1
    Active sitei233Proton acceptor; for processing activityBy similarity1
    Active sitei246Proton acceptor; for processing activityBy similarity1
    Binding sitei250SubstrateBy similarity1

    <p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

    • adenosylmethionine decarboxylase activity Source: TAIR

    GO - Biological processi

    <p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

    Molecular functionDecarboxylase, Lyase
    Biological processPolyamine biosynthesis, Spermidine biosynthesis
    LigandPyruvate, S-adenosyl-L-methionine, Schiff base

    Enzyme and pathway databases

    BRENDA Comprehensive Enzyme Information System

    More...
    BRENDAi
    4.1.1.50, 399

    SABIO-RK: Biochemical Reaction Kinetics Database

    More...
    SABIO-RKi
    Q96286

    UniPathway: a resource for the exploration and annotation of metabolic pathways

    More...
    UniPathwayi
    UPA00331;UER00451

    <p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

    <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
    Recommended name:
    S-adenosylmethionine decarboxylase proenzyme 1Curated (EC:4.1.1.501 Publication)
    Short name:
    AdoMetDC11 Publication
    Cleaved into the following 2 chains:
    S-adenosylmethionine decarboxylase 1 alpha chainBy similarity
    S-adenosylmethionine decarboxylase 1 beta chainBy similarity
    <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
    Name:SAMDC11 Publication
    Synonyms:SAMDC1 Publication
    Ordered Locus Names:At3g02470
    ORF Names:F16B3.10
    <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
    <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
    <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
    • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 3

    Organism-specific databases

    Arabidopsis Information Portal

    More...
    Araporti
    AT3G02470

    The Arabidopsis Information Resource

    More...
    TAIRi
    locus:2076834, AT3G02470

    <p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

    <p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

    <p>This subsection of the 'Pathology and Biotech' section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

    Reduction in the length of stem internodes. Increased thickness of veins in leaves and inflorescence stems. Altered morphology of xylem vessel elements. The double mutants of bud2-1 and samdc1-1 are embryonic lethal.1 Publication

    Mutagenesis

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    <p>This subsection of the <a href="http://www.uniprot.org/manual/pathology%5Fand%5Fbiotech%5Fsection">'Pathology and Biotech'</a> section describes the effect of the experimental mutation of one or more amino acid(s) on the biological properties of the protein.<p><a href='/help/mutagen' target='_top'>More...</a></p>Mutagenesisi50C → A: Slightly reduces activity. 1 Publication1
    Mutagenesisi81K → A: Reduces activity 2-fold. Increases substrate specificity for lysine 6-fold. 1 Publication1
    Mutagenesisi83C → A: Reduces activity 10-fold. 1 Publication1
    Mutagenesisi230C → A: Slightly reduces activity. 1 Publication1

    <p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

    Molecule processing

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    <p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00000299871 – 68S-adenosylmethionine decarboxylase 1 beta chainBy similarityAdd BLAST68
    ChainiPRO_000002998869 – 366S-adenosylmethionine decarboxylase 1 alpha chainBy similarityAdd BLAST298

    Amino acid modifications

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    <p>This subsection of the 'PTM / Processing' section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei69Pyruvic acid (Ser); by autocatalysisBy similarity1

    <p>This subsection of the <a href="http://www.uniprot.org/help/ptm%5Fprocessing%5Fsection">PTM/processing</a> section describes post-translational modifications (PTMs). This subsection <strong>complements</strong> the information provided at the sequence level or describes modifications for which <strong>position-specific data is not yet available</strong>.<p><a href='/help/post-translational_modification' target='_top'>More...</a></p>Post-translational modificationi

    Is synthesized initially as an inactive proenzyme. Formation of the active enzyme involves a self-maturation process in which the active site pyruvoyl group is generated from an internal serine residue via an autocatalytic post-translational modification. Two non-identical subunits are generated from the proenzyme in this reaction, and the pyruvate is formed at the N-terminus of the alpha chain, which is derived from the carboxyl end of the proenzyme. The post-translation cleavage follows an unusual pathway, termed non-hydrolytic serinolysis, in which the side chain hydroxyl group of the serine supplies its oxygen atom to form the C-terminus of the beta chain, while the remainder of the serine residue undergoes an oxidative deamination to produce ammonia and the pyruvoyl group blocking the N-terminus of the alpha chain.By similarity

    Sites

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    <p>This subsection describes interesting single amino acid sites on the sequence that are not defined in any other subsection. This subsection can be displayed in different sections ('Function', 'PTM / Processing', 'Pathology and Biotech') according to its content.<p><a href='/help/site' target='_top'>More...</a></p>Sitei68 – 69Cleavage (non-hydrolytic); by autolysisBy similarity2

    Keywords - PTMi

    Autocatalytic cleavage, Zymogen

    Proteomic databases

    PaxDb, a database of protein abundance averages across all three domains of life

    More...
    PaxDbi
    Q96286

    PRoteomics IDEntifications database

    More...
    PRIDEi
    Q96286

    ProteomicsDB: a multi-organism proteome resource

    More...
    ProteomicsDBi
    224680

    <p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

    <p>This subsection of the 'Expression' section reports the experimentally proven effects of inducers and repressors (usually chemical compounds or environmental factors) on the level of protein (or mRNA) expression (up-regulation, down-regulation, constitutive expression).<p><a href='/help/induction' target='_top'>More...</a></p>Inductioni

    Down-regulated by auxin.1 Publication

    Gene expression databases

    ExpressionAtlas, Differential and Baseline Expression

    More...
    ExpressionAtlasi
    Q96286, baseline and differential

    Genevisible search portal to normalized and curated expression data from Genevestigator

    More...
    Genevisiblei
    Q96286, AT

    <p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

    Protein-protein interaction databases

    The Biological General Repository for Interaction Datasets (BioGRID)

    More...
    BioGRIDi
    6547, 2 interactors

    Protein interaction database and analysis system

    More...
    IntActi
    Q96286, 1 interactor

    STRING: functional protein association networks

    More...
    STRINGi
    3702.AT3G02470.1

    <p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

    3D structure databases

    SWISS-MODEL Repository - a database of annotated 3D protein structure models

    More...
    SMRi
    Q96286

    Database of comparative protein structure models

    More...
    ModBasei
    Search...

    <p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

    <p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

    Belongs to the eukaryotic AdoMetDC family.Curated

    Phylogenomic databases

    evolutionary genealogy of genes: Non-supervised Orthologous Groups

    More...
    eggNOGi
    KOG0788, Eukaryota

    The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

    More...
    HOGENOMi
    CLU_023050_2_1_1

    InParanoid: Eukaryotic Ortholog Groups

    More...
    InParanoidi
    Q96286

    Identification of Orthologs from Complete Genome Data

    More...
    OMAi
    FKNSANG

    Database of Orthologous Groups

    More...
    OrthoDBi
    932490at2759

    Database for complete collections of gene phylogenies

    More...
    PhylomeDBi
    Q96286

    Family and domain databases

    Integrated resource of protein families, domains and functional sites

    More...
    InterProi
    View protein in InterPro
    IPR001985, S-AdoMet_decarboxylase
    IPR016067, S-AdoMet_deCO2ase_core
    IPR018166, S-AdoMet_deCO2ase_CS

    The PANTHER Classification System

    More...
    PANTHERi
    PTHR11570, PTHR11570, 1 hit

    Pfam protein domain database

    More...
    Pfami
    View protein in Pfam
    PF01536, SAM_decarbox, 1 hit

    PIRSF; a whole-protein classification database

    More...
    PIRSFi
    PIRSF001355, S-AdenosylMet_decarboxylase, 1 hit

    Superfamily database of structural and functional annotation

    More...
    SUPFAMi
    SSF56276, SSF56276, 1 hit

    TIGRFAMs; a protein family database

    More...
    TIGRFAMsi
    TIGR00535, SAM_DCase, 1 hit

    PROSITE; a protein domain and family database

    More...
    PROSITEi
    View protein in PROSITE
    PS01336, ADOMETDC, 1 hit

    <p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

    <p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

    <p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

    Q96286-1 [UniParc]FASTAAdd to basket
    « Hide
            10         20         30         40         50
    MALSAIGFEG YEKRLEVTFF EPSIFQDSKG LGLRALTKSQ LDEILTPAAC
    60 70 80 90 100
    TIVSSLSNDQ LDSYVLSESS FFVYPYKVII KTCGTTKLLL SIPPLLKLAG
    110 120 130 140 150
    ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY
    160 170 180 190 200
    LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
    210 220 230 240 250
    ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE
    260 270 280 290 300
    DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
    310 320 330 340 350
    PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW
    360
    SSNNSCSSED EKDEGI
    Length:366
    Mass (Da):40,403
    Last modified:August 14, 2001 - v2
    <p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i7E416C3E42BA804E
    GO

    Experimental Info

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    <p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti123P → L in CAA69073 (PubMed:11139406).Curated1
    Sequence conflicti150Y → T in AAB17665 (Ref. 2) Curated1
    Sequence conflicti216I → N in AAB17665 (Ref. 2) Curated1
    Sequence conflicti245I → N in AAB17665 (Ref. 2) Curated1

    Sequence databases

    Select the link destinations:

    EMBL nucleotide sequence database

    More...
    EMBLi

    GenBank nucleotide sequence database

    More...
    GenBanki

    DNA Data Bank of Japan; a nucleotide sequence database

    More...
    DDBJi
    Links Updated
    Y07765 Genomic DNA Translation: CAA69073.1
    U63633 mRNA Translation: AAB17665.1
    AC021640 Genomic DNA Translation: AAF32454.1
    CP002686 Genomic DNA Translation: AEE73812.1
    CP002686 Genomic DNA Translation: AEE73813.1
    CP002686 Genomic DNA Translation: AEE73814.1
    AF428468 mRNA Translation: AAL16237.1
    AY042824 mRNA Translation: AAK68764.1
    AY081446 mRNA Translation: AAM10008.1
    AK316891 mRNA Translation: BAH19598.1

    NCBI Reference Sequences

    More...
    RefSeqi
    NP_001078093.1, NM_001084624.1
    NP_001154585.1, NM_001161113.1
    NP_186896.1, NM_111114.2

    Genome annotation databases

    Ensembl plant genome annotation project

    More...
    EnsemblPlantsi
    AT3G02470.1; AT3G02470.1; AT3G02470
    AT3G02470.3; AT3G02470.3; AT3G02470
    AT3G02470.4; AT3G02470.4; AT3G02470

    Database of genes from NCBI RefSeq genomes

    More...
    GeneIDi
    821214

    Gramene; a comparative resource for plants

    More...
    Gramenei
    AT3G02470.1; AT3G02470.1; AT3G02470
    AT3G02470.3; AT3G02470.3; AT3G02470
    AT3G02470.4; AT3G02470.4; AT3G02470

    KEGG: Kyoto Encyclopedia of Genes and Genomes

    More...
    KEGGi
    ath:AT3G02470

    <p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

    <p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBLi
    GenBanki
    DDBJi
    Links Updated
    Y07765 Genomic DNA Translation: CAA69073.1
    U63633 mRNA Translation: AAB17665.1
    AC021640 Genomic DNA Translation: AAF32454.1
    CP002686 Genomic DNA Translation: AEE73812.1
    CP002686 Genomic DNA Translation: AEE73813.1
    CP002686 Genomic DNA Translation: AEE73814.1
    AF428468 mRNA Translation: AAL16237.1
    AY042824 mRNA Translation: AAK68764.1
    AY081446 mRNA Translation: AAM10008.1
    AK316891 mRNA Translation: BAH19598.1
    RefSeqiNP_001078093.1, NM_001084624.1
    NP_001154585.1, NM_001161113.1
    NP_186896.1, NM_111114.2

    3D structure databases

    SMRiQ96286
    ModBaseiSearch...

    Protein-protein interaction databases

    BioGRIDi6547, 2 interactors
    IntActiQ96286, 1 interactor
    STRINGi3702.AT3G02470.1

    Proteomic databases

    PaxDbiQ96286
    PRIDEiQ96286
    ProteomicsDBi224680

    Genome annotation databases

    EnsemblPlantsiAT3G02470.1; AT3G02470.1; AT3G02470
    AT3G02470.3; AT3G02470.3; AT3G02470
    AT3G02470.4; AT3G02470.4; AT3G02470
    GeneIDi821214
    GrameneiAT3G02470.1; AT3G02470.1; AT3G02470
    AT3G02470.3; AT3G02470.3; AT3G02470
    AT3G02470.4; AT3G02470.4; AT3G02470
    KEGGiath:AT3G02470

    Organism-specific databases

    AraportiAT3G02470
    TAIRilocus:2076834, AT3G02470

    Phylogenomic databases

    eggNOGiKOG0788, Eukaryota
    HOGENOMiCLU_023050_2_1_1
    InParanoidiQ96286
    OMAiFKNSANG
    OrthoDBi932490at2759
    PhylomeDBiQ96286

    Enzyme and pathway databases

    UniPathwayiUPA00331;UER00451
    BRENDAi4.1.1.50, 399
    SABIO-RKiQ96286

    Miscellaneous databases

    Protein Ontology

    More...
    PROi
    PR:Q96286

    Gene expression databases

    ExpressionAtlasiQ96286, baseline and differential
    GenevisibleiQ96286, AT

    Family and domain databases

    InterProiView protein in InterPro
    IPR001985, S-AdoMet_decarboxylase
    IPR016067, S-AdoMet_deCO2ase_core
    IPR018166, S-AdoMet_deCO2ase_CS
    PANTHERiPTHR11570, PTHR11570, 1 hit
    PfamiView protein in Pfam
    PF01536, SAM_decarbox, 1 hit
    PIRSFiPIRSF001355, S-AdenosylMet_decarboxylase, 1 hit
    SUPFAMiSSF56276, SSF56276, 1 hit
    TIGRFAMsiTIGR00535, SAM_DCase, 1 hit
    PROSITEiView protein in PROSITE
    PS01336, ADOMETDC, 1 hit

    ProtoNet; Automatic hierarchical classification of proteins

    More...
    ProtoNeti
    Search...

    MobiDB: a database of protein disorder and mobility annotations

    More...
    MobiDBi
    Search...

    <p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

    <p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiDCAM1_ARATH
    <p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q96286
    Secondary accession number(s): B9DFT1, Q96531, Q9M893
    <p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 15, 1998
    Last sequence update: August 14, 2001
    Last modified: December 2, 2020
    This is version 154 of the entry and version 2 of the sequence. See complete history.
    <p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    <p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

    Keywords - Technical termi

    Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    3. SIMILARITY comments
      Index of protein domains and families
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