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Protein

60S ribosomal protein L9

Gene

rpl-9

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

  • cytoplasmic translation Source: GO_Central
  • determination of adult lifespan Source: WormBase

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-CEL-1799339 SRP-dependent cotranslational protein targeting to membrane
R-CEL-72689 Formation of a pool of free 40S subunits
R-CEL-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-CEL-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-CEL-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L9
Gene namesi
Name:rpl-9
ORF Names:R13A5.8
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome III

Organism-specific databases

WormBaseiR13A5.8 ; CE01380 ; WBGene00004420 ; rpl-9

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001311041 – 18960S ribosomal protein L9Add BLAST189

Proteomic databases

EPDiQ95Y90
PaxDbiQ95Y90
PeptideAtlasiQ95Y90
PRIDEiQ95Y90

Expressioni

Gene expression databases

BgeeiWBGene00004420

Interactioni

Protein-protein interaction databases

BioGridi41279, 7 interactors
DIPiDIP-26431N
IntActiQ95Y90, 8 interactors
STRINGi6239.R13A5.8.1

Structurei

3D structure databases

ProteinModelPortaliQ95Y90
SMRiQ95Y90
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3255 Eukaryota
COG0097 LUCA
GeneTreeiENSGT00390000015224
HOGENOMiHOG000039905
InParanoidiQ95Y90
KOiK02940
OMAiVFQDGIY
OrthoDBiEOG091G0R6Z
PhylomeDBiQ95Y90

Family and domain databases

Gene3Di3.90.930.12, 2 hits
InterProiView protein in InterPro
IPR000702 Ribosomal_L6
IPR020040 Ribosomal_L6_a/b-dom
IPR036789 Ribosomal_L6_a/b-dom_sf
IPR002359 Ribosomal_L6_CS2
PANTHERiPTHR11655 PTHR11655, 1 hit
PfamiView protein in Pfam
PF00347 Ribosomal_L6, 2 hits
PIRSFiPIRSF002162 Ribosomal_L6, 1 hit
SUPFAMiSSF56053 SSF56053, 2 hits
PROSITEiView protein in PROSITE
PS00700 RIBOSOMAL_L6_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q95Y90-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLIESNDTV VFPEGVTFTV KNRIVHVTGP RGTIRKDFRH LHMEMERIGK
60 70 80 90 100
STLRVRKWFG VRKELAAIRT VCSHIKNMIK GVTVGFRYKM RSVYAHFPIN
110 120 130 140 150
VTLQDGNRTV EIRNFLGEKI VRRVPLPEGV IATISTAQKD EIVVEGNDVQ
160 170 180
FVSQAAARIQ QSTAVKEKDI RKFLDGIYVS EKTTIVPTD
Length:189
Mass (Da):21,508
Last modified:December 1, 2001 - v1
Checksum:iBAF0BDAB68074FF8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080424 Genomic DNA Translation: CCD63603.1
RefSeqiNP_498660.1, NM_066259.5
UniGeneiCel.17183

Genome annotation databases

EnsemblMetazoaiR13A5.8; R13A5.8; WBGene00004420
GeneIDi176071
KEGGicel:CELE_R13A5.8
UCSCiR13A5.8.1 c. elegans

Similar proteinsi

Entry informationi

Entry nameiRL9_CAEEL
AccessioniPrimary (citable) accession number: Q95Y90
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 11, 2002
Last sequence update: December 1, 2001
Last modified: July 18, 2018
This is version 114 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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