Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

GH28335p

Gene

Syp

Organism
Drosophila melanogaster (Fruit fly)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • mRNA binding Source: FlyBase

GO - Biological processi

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotation

Enzyme and pathway databases

ReactomeiR-DME-72163 mRNA Splicing - Major Pathway
R-DME-75094 Formation of the Editosome

Names & Taxonomyi

Protein namesi
Submitted name:
GH28335pImported
Submitted name:
Syncrip, isoform CImported
Gene namesi
Name:SypImported
Synonyms:AI945337Imported, anon-WO0118547.613Imported, cg17838Imported, Dmel\CG17838Imported, l(3)03806Imported, sypImported
ORF Names:CG17838Imported, Dmel_CG17838Imported
OrganismiDrosophila melanogaster (Fruit fly)Imported
Taxonomic identifieri7227 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraHolometabolaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
Proteomesi
  • UP000000803 Componenti: Chromosome 3R

Organism-specific databases

FlyBaseiFBgn0038826 Syp

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

BgeeiFBgn0038826 Expressed in 32 organ(s), highest expression level in imaginal disc

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini164 – 243RRMInterPro annotationAdd BLAST80
Domaini245 – 327RRMInterPro annotationAdd BLAST83
Domaini340 – 410RRMInterPro annotationAdd BLAST71

Phylogenomic databases

eggNOGiKOG0117 Eukaryota
ENOG410XTJ5 LUCA
GeneTreeiENSGT00550000074366
OrthoDBiEOG091G0EUB

Family and domain databases

Gene3Di3.30.70.330, 3 hits
InterProiView protein in InterPro
IPR006535 HnRNP_R/Q_splicing_fac
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
PfamiView protein in Pfam
PF00076 RRM_1, 3 hits
SMARTiView protein in SMART
SM00360 RRM, 3 hits
SUPFAMiSSF54928 SSF54928, 2 hits
TIGRFAMsiTIGR01648 hnRNP-R-Q, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 3 hits

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 14 potential isoforms that are computationally mapped.Show allAlign All

Q95TW4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAEGNGELLD DINQKADDRG DGERTEDYPK LLEYGLDKKV AGKLDEIYKT
60 70 80 90 100
GKLAHAELDE RALDALKEFP VDGALNVLGQ FLESNLEHVS NKSAYLCGVM
110 120 130 140 150
KTYRQKSRAS QQGVAAPATV KGPDEDKIKK ILERTGYTLD VTTGQRKYGG
160 170 180 190 200
PPPHWEGNVP GNGCEVFCGK IPKDMYEDEL IPLFENCGII WDLRLMMDPM
210 220 230 240 250
TGTNRGYAFV TFTNREAAVN AVRQLNDFEI RTGKKIGVTI SFNNHRLFVG
260 270 280 290 300
NIPKNRDRDE LIEEFSKHAP GLYEVIIYSS PDDKKKNRGF CFLEYESHKA
310 320 330 340 350
ASLAKRRLGT GRIKVWGCDI IVDWADPQEE PDEQTMSKVK VLYVRNLTQD
360 370 380 390 400
VSEDKLKEQF EQYGKVERVK KIKDYAFIHF EDRDSAVEAM RGLNGKEIGA
410 420 430 440 450
SNIEVSLAKP PSDKKKKEEI LRARERRMMQ MMQARPGIVG NLSPTHPSIM
460 470 480 490 500
SLTPMRPGAR MPLRTPIPRE YVVGKRKFDG GHQNPADVKR RYPSGLIGNG
510 520
GSWGSLPLPQ QPLGTNGEQW YMDTFSAWS
Length:529
Mass (Da):59,652
Last modified:December 1, 2001 - v1
Checksum:iEFE41BBE6416504C
GO

Computationally mapped potential isoform sequencesi

There are 14 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A0B4KHI4A0A0B4KHI4_DROME
Syncrip, isoform Q
Syp AI945337, anon-WO0118547.613, cg17838, Dmel\CG17838, l(3)03806
761Annotation score:
A4V364A4V364_DROME
Syncrip, isoform F
Syp AI945337, anon-WO0118547.613, cg17838, Dmel\CG17838, l(3)03806
529Annotation score:
Q8IN48Q8IN48_DROME
Syncrip, isoform E
Syp AI945337, anon-WO0118547.613, cg17838, Dmel\CG17838, l(3)03806
571Annotation score:
Q9VDI8Q9VDI8_DROME
Syncrip, isoform D
Syp AI945337, anon-WO0118547.613, cg17838, Dmel\CG17838, l(3)03806
707Annotation score:
Q8IN47Q8IN47_DROME
Syncrip, isoform A
Syp AI945337, anon-WO0118547.613, cg17838, Dmel\CG17838, l(3)03806
563Annotation score:
A8JR54A8JR54_DROME
Syncrip, isoform H
Syp AI945337, anon-WO0118547.613, cg17838, Dmel\CG17838, l(3)03806
534Annotation score:
Q7KSA0Q7KSA0_DROME
Syncrip, isoform B
Syp AI945337, anon-WO0118547.613, cg17838, Dmel\CG17838, l(3)03806
711Annotation score:
A0A0B4KGK8A0A0B4KGK8_DROME
Syncrip, isoform R
Syp AI945337, anon-WO0118547.613, cg17838, Dmel\CG17838, l(3)03806
569Annotation score:
A0A0B4KHT5A0A0B4KHT5_DROME
Syncrip, isoform J
Syp AI945337, anon-WO0118547.613, cg17838, Dmel\CG17838, l(3)03806
761Annotation score:
A0A0B4KH24A0A0B4KH24_DROME
Syncrip, isoform O
Syp AI945337, anon-WO0118547.613, cg17838, Dmel\CG17838, l(3)03806
611Annotation score:
There are more potential isoformsShow all

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY058477 mRNA Translation: AAL13706.1
AE014297 Genomic DNA Translation: AAN13833.2
RefSeqiNP_732558.2, NM_169928.3
UniGeneiDm.11889

Genome annotation databases

EnsemblMetazoaiFBtr0083960; FBpp0083367; FBgn0038826
GeneIDi42460
UCSCiCG17838-RC d. melanogaster

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY058477 mRNA Translation: AAL13706.1
AE014297 Genomic DNA Translation: AAN13833.2
RefSeqiNP_732558.2, NM_169928.3
UniGeneiDm.11889

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiFBtr0083960; FBpp0083367; FBgn0038826
GeneIDi42460
UCSCiCG17838-RC d. melanogaster

Organism-specific databases

CTDi6855
FlyBaseiFBgn0038826 Syp

Phylogenomic databases

eggNOGiKOG0117 Eukaryota
ENOG410XTJ5 LUCA
GeneTreeiENSGT00550000074366
OrthoDBiEOG091G0EUB

Enzyme and pathway databases

ReactomeiR-DME-72163 mRNA Splicing - Major Pathway
R-DME-75094 Formation of the Editosome

Miscellaneous databases

ChiTaRSiSyp fly
GenomeRNAii42460

Gene expression databases

BgeeiFBgn0038826 Expressed in 32 organ(s), highest expression level in imaginal disc

Family and domain databases

Gene3Di3.30.70.330, 3 hits
InterProiView protein in InterPro
IPR006535 HnRNP_R/Q_splicing_fac
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
PfamiView protein in Pfam
PF00076 RRM_1, 3 hits
SMARTiView protein in SMART
SM00360 RRM, 3 hits
SUPFAMiSSF54928 SSF54928, 2 hits
TIGRFAMsiTIGR01648 hnRNP-R-Q, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 3 hits
ProtoNetiSearch...

Entry informationi

Entry nameiQ95TW4_DROME
AccessioniPrimary (citable) accession number: Q95TW4
Secondary accession number(s): Q7KSA1
Entry historyiIntegrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: November 7, 2018
This is version 153 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again