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Entry version 151 (12 Aug 2020)
Sequence version 1 (01 Dec 2001)
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Protein

ABC transporter D family member 1

Gene

ABCD1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Contributes to the transport of fatty acids and their derivatives (acyl CoAs) across the peroxisomal membrane. Provides acetate to the glyoxylate cycle in developing seedlings. Involved in pollen tube elongation, ovule fertilization, and seeds germination after imbibition (controls the switch between the opposing developmental programs of dormancy and germination), probably by promoting beta-oxidation of storage lipids during gluconeogenesis. Required for biosynthesis of jasmonic acid and conversion of indole butyric acid to indole acetic acid. Confers sensitivity to monofluoroacetic acid (FAc), a toxic acetate analog, and to 2,4-dichlorophenoxybutyric acid (2,4-DB) and indole-3-butyric acid (IBA), two precursors of auxin after beta-oxidation.11 Publications

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes a region in the protein which binds nucleotide phosphates. It always involves more than one amino acid and includes all residues involved in nucleotide-binding.<p><a href='/help/np_bind' target='_top'>More...</a></p>Nucleotide bindingi481 – 488ATPPROSITE-ProRule annotation8
Nucleotide bindingi1130 – 1137ATPPROSITE-ProRule annotation8

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

  • lipid catabolic process Source: CACAO

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionTranslocase
Biological processTransport
LigandATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
ARA:AT4G39850-MONOMER

BRENDA Comprehensive Enzyme Information System

More...
BRENDAi
3.6.3.47, 399

Protein family/group databases

Transport Classification Database

More...
TCDBi
3.A.1.203.5, the atp-binding cassette (abc) superfamily

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
ABC transporter D family member 11 Publication (EC:7.6.2.4)
Short name:
ABC transporter ABCD.11 Publication
Short name:
AtABCD11 Publication
Alternative name(s):
Peroxisomal ABC transporter 1
Short name:
AtPXA1
Protein ACETATE NON-UTILIZING 2
Protein COMATOSE
Protein PEROXISOME DEFECTIVE 3
Short name:
Ped3p
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:ABCD11 Publication
Synonyms:ACN2, CTS, PED3, PMP2, PXA1
Ordered Locus Names:At4g39850
ORF Names:T5J17.20
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 4

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT4G39850

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei24 – 44HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei142 – 162HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei247 – 267HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei342 – 362HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei900 – 920HelicalPROSITE-ProRule annotationAdd BLAST21

Keywords - Cellular componenti

Glyoxysome, Membrane, Peroxisome

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the 'Pathology and Biotech' section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

Impaired germination after imbibition, rescued by sucrose treatment. Resistance to FAc, IBA and 2,4-DB. Compromised ability to convert acetate into soluble carbohydrate. Defective in lipid mobilization and accumulate acyl CoAs. Poor initiation of lateral root formation and smaller rosettes with fewer leaves than in wild-type. Crinkled and waxy leaves.10 Publications

Mutagenesis

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/manual/pathology%5Fand%5Fbiotech%5Fsection">'Pathology and Biotech'</a> section describes the effect of the experimental mutation of one or more amino acid(s) on the biological properties of the protein.<p><a href='/help/mutagen' target='_top'>More...</a></p>Mutagenesisi810S → N in ped3-4; Normal germination, but impaired seedling, roots and leaves growth. 1 Publication1
Mutagenesisi1035R → W in ped3-2; Normal germination, but impaired seedling, roots and leaves growth. 1 Publication1

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003791351 – 1337ABC transporter D family member 1Add BLAST1337

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

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PaxDbi
Q94FB9

PRoteomics IDEntifications database

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PRIDEi
Q94FB9

ProteomicsDB: a multi-organism proteome resource

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ProteomicsDBi
245130 [Q94FB9-1]

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q94FB9

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the 'Expression' section provides information on the expression of the gene product at various stages of a cell, tissue or organism development. By default, the information is derived from experiments at the mRNA level, unless specified 'at the protein level'.<p><a href='/help/developmental_stage' target='_top'>More...</a></p>Developmental stagei

Levels increase transiently after germination, before and during radicle emergence, especially in darkness (at protein level).2 Publications

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q94FB9, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q94FB9, AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction%5Fsection">Interaction</a>' section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="https://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated at every <a href="http://www.uniprot.org/help/synchronization">UniProt release</a>.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

Hide details

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...
BioGRIDi
15424, 7 interactors

Protein interaction database and analysis system

More...
IntActi
Q94FB9, 2 interactors

Molecular INTeraction database

More...
MINTi
Q94FB9

STRING: functional protein association networks

More...
STRINGi
3702.AT4G39850.3

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini117 – 395ABC transmembrane type-1 1PROSITE-ProRule annotationAdd BLAST279
Domaini448 – 695ABC transporter 1PROSITE-ProRule annotationAdd BLAST248
Domaini751 – 1049ABC transmembrane type-1 2PROSITE-ProRule annotationAdd BLAST299
Domaini1091 – 1337ABC transporter 2PROSITE-ProRule annotationAdd BLAST247

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Keywords - Domaini

Repeat, Transmembrane, Transmembrane helix

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
KOG0060, Eukaryota
KOG0064, Eukaryota

Identification of Orthologs from Complete Genome Data

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OMAi
WELCEIH

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q94FB9

Family and domain databases

Integrated resource of protein families, domains and functional sites

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InterProi
View protein in InterPro
IPR003593, AAA+_ATPase
IPR011527, ABC1_TM_dom
IPR036640, ABC1_TM_sf
IPR003439, ABC_transporter-like
IPR017871, ABC_transporter_CS
IPR027417, P-loop_NTPase

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF06472, ABC_membrane_2, 2 hits
PF00005, ABC_tran, 2 hits

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00382, AAA, 2 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52540, SSF52540, 2 hits
SSF90123, SSF90123, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50929, ABC_TM1F, 2 hits
PS00211, ABC_TRANSPORTER_1, 2 hits
PS50893, ABC_TRANSPORTER_2, 2 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 1 <p>This subsection of the 'Sequence' section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform. This section is only present in reviewed entries, i.e. in UniProtKB/Swiss-Prot.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoform i produced by alternative splicing. AlignAdd to basket
Note: A number of isoforms are produced. According to EST sequences.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: Q94FB9-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MPSLQLLQLT ERGRGLVASR RKSILLAAGI VAAGGTAVYL KSRVASRRPD
60 70 80 90 100
SSRLCNGQSD DDETLEKLTA TDQNAKITTK KKKGGGLKSL QVLTAILLSQ
110 120 130 140 150
MGKMGARDLL ALVATVVFRT ALSNRLAKVQ GFLFRAAFLR RAPLFLRLIS
160 170 180 190 200
ENIMLCFMLS TLHSTSKYIT GALSLRFRKI LTKIIHSHYF ENMVYYKISH
210 220 230 240 250
VDGRITHPEQ RIASDVPRFS SELSDLILDD LTAVTDGILY AWRLCSYASP
260 270 280 290 300
KYIFWILAYV LGAGTAIRNF SPSFGKLMSK EQQLEGEYRQ LHSRLRTHSE
310 320 330 340 350
SIAFYGGETR EESHIQQKFK NLVSHMSHVL HDHWWFGMIQ DFLLKYLGAT
360 370 380 390 400
VAVILIIEPF FSGHLRPDDS TLGRAEMLSN IRYHTSVIIS LFQALGTLSI
410 420 430 440 450
SSRRLNRLSG YADRIHELMA VSRELSGDDK SSFQRNRSRN YLSEANYVEF
460 470 480 490 500
SDVKVVTPTG NVLVEDLTLR VEQGSNLLIT GPNGSGKSSL FRVLGGLWPL
510 520 530 540 550
VSGHIVKPGV GSDLNKEIFY VPQRPYMAVG TLRDQLIYPL TSGQESELLT
560 570 580 590 600
EIGMVELLKN VDLEYLLDRY QPEKEVNWGD ELSLGEQQRL GMARLFYHKP
610 620 630 640 650
KFAILDECTS AVTTDMEERF AAKVRAMGTS CITISHRPAL VAFHDVVLSL
660 670 680 690 700
DGEGGWSVHY KRDDSALLTD AEIDSVKSSD TDRQNDAMVV QRAFAAARKE
710 720 730 740 750
SATNSKAQSY QTQLIARSPV VDKSVVLPRF PQPQTSQRAL PSRVAAMLNV
760 770 780 790 800
LIPTIFDKQG AQLLAVACLV VSRTLISDRI ASLNGTTVKY VLEQDKAAFV
810 820 830 840 850
RLIGLSVLQS GASSIIAPSL RHLTQRLALG WRIRLTQHLL RNYLRNNAFY
860 870 880 890 900
KVFHMSGNSI DADQRLTRDL EKLTADLSGL LTGMVKPSVD ILWFTWRMKL
910 920 930 940 950
LTGQRGVAIL YTYMLLGLGF LRRVAPDFGD LAGEEQQLEG KFRFMHERLN
960 970 980 990 1000
THAESIAFFG GGAREKAMVD KKFRALLDHS LMLLRKKWLY GILDDFVTKQ
1010 1020 1030 1040 1050
LPNNVTWGLS LLYALEHKGD RALVSTQGEL AHALRYLASV VSQSFMAFGD
1060 1070 1080 1090 1100
ILELHKKFLE LSGGINRIFE LDEFLDASQS GVTSENQTSR LDSQDLLSFS
1110 1120 1130 1140 1150
EVDIITPAQK LMASKLSCEI VSGKSLLVTG PNGSGKTSVF RVLRDIWPTV
1160 1170 1180 1190 1200
CGRLTKPSLD IKELGSGNGM FFVPQRPYTC LGTLRDQIIY PLSKEEAEKR
1210 1220 1230 1240 1250
AAKLYTSGES STEAGSILDS HLKTILENVR LVYLLERDVG GWDATTNWED
1260 1270 1280 1290 1300
ILSLGEQQRL GMARLFFHRP KFGVLDECTN ATSVDVEEQL YRVARDMGVT
1310 1320 1330
FITSSQRPAL IPFHSLELRL IDGEGNWELR SIEQTTE
Length:1,337
Mass (Da):149,576
Last modified:December 1, 2001 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i9AA08CF944FC8BFE
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F4JJ27F4JJ27_ARATH
Peroxisomal ABC transporter 1
ABCD1 acetate non-utilizing 2, ACN2, AtABCD1, ATP-binding cassette D1, COMATOSE
1,352Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F4JJ28F4JJ28_ARATH
Peroxisomal ABC transporter 1
ABCD1 acetate non-utilizing 2, ACN2, AtABCD1, ATP-binding cassette D1, COMATOSE
1,338Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence CAB38898 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence CAB80648 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti64T → A in BAB84551 (PubMed:11828016).Curated1
Sequence conflicti64T → A in BAB84550 (PubMed:11828016).Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AF378120 mRNA Translation: AAK95343.1
AJ311341 Genomic DNA Translation: CAC85290.1
AB070615 Genomic DNA Translation: BAB84550.1
AB070616 mRNA Translation: BAB84551.1
AL035708 Genomic DNA Translation: CAB38898.1 Sequence problems.
AL161596 Genomic DNA Translation: CAB80648.1 Sequence problems.
CP002687 Genomic DNA Translation: AEE87126.1
CP002687 Genomic DNA Translation: ANM66328.1

Protein sequence database of the Protein Information Resource

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PIRi
T06091

NCBI Reference Sequences

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RefSeqi
NP_001328232.1, NM_001342558.1 [Q94FB9-1]
NP_568072.1, NM_120148.3 [Q94FB9-1]

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT4G39850.1; AT4G39850.1; AT4G39850 [Q94FB9-1]
AT4G39850.4; AT4G39850.4; AT4G39850 [Q94FB9-1]

Database of genes from NCBI RefSeq genomes

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GeneIDi
830144

Gramene; a comparative resource for plants

More...
Gramenei
AT4G39850.1; AT4G39850.1; AT4G39850 [Q94FB9-1]
AT4G39850.4; AT4G39850.4; AT4G39850 [Q94FB9-1]

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT4G39850

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF378120 mRNA Translation: AAK95343.1
AJ311341 Genomic DNA Translation: CAC85290.1
AB070615 Genomic DNA Translation: BAB84550.1
AB070616 mRNA Translation: BAB84551.1
AL035708 Genomic DNA Translation: CAB38898.1 Sequence problems.
AL161596 Genomic DNA Translation: CAB80648.1 Sequence problems.
CP002687 Genomic DNA Translation: AEE87126.1
CP002687 Genomic DNA Translation: ANM66328.1
PIRiT06091
RefSeqiNP_001328232.1, NM_001342558.1 [Q94FB9-1]
NP_568072.1, NM_120148.3 [Q94FB9-1]

3D structure databases

Database of comparative protein structure models

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ModBasei
Search...

SWISS-MODEL Interactive Workspace

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SWISS-MODEL-Workspacei
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Protein-protein interaction databases

BioGRIDi15424, 7 interactors
IntActiQ94FB9, 2 interactors
MINTiQ94FB9
STRINGi3702.AT4G39850.3

Protein family/group databases

TCDBi3.A.1.203.5, the atp-binding cassette (abc) superfamily

PTM databases

iPTMnetiQ94FB9

Proteomic databases

PaxDbiQ94FB9
PRIDEiQ94FB9
ProteomicsDBi245130 [Q94FB9-1]

Genome annotation databases

EnsemblPlantsiAT4G39850.1; AT4G39850.1; AT4G39850 [Q94FB9-1]
AT4G39850.4; AT4G39850.4; AT4G39850 [Q94FB9-1]
GeneIDi830144
GrameneiAT4G39850.1; AT4G39850.1; AT4G39850 [Q94FB9-1]
AT4G39850.4; AT4G39850.4; AT4G39850 [Q94FB9-1]
KEGGiath:AT4G39850

Organism-specific databases

AraportiAT4G39850

Phylogenomic databases

eggNOGiKOG0060, Eukaryota
KOG0064, Eukaryota
OMAiWELCEIH
PhylomeDBiQ94FB9

Enzyme and pathway databases

BioCyciARA:AT4G39850-MONOMER
BRENDAi3.6.3.47, 399

Miscellaneous databases

Protein Ontology

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PROi
PR:Q94FB9

Gene expression databases

ExpressionAtlasiQ94FB9, baseline and differential
GenevisibleiQ94FB9, AT

Family and domain databases

InterProiView protein in InterPro
IPR003593, AAA+_ATPase
IPR011527, ABC1_TM_dom
IPR036640, ABC1_TM_sf
IPR003439, ABC_transporter-like
IPR017871, ABC_transporter_CS
IPR027417, P-loop_NTPase
PfamiView protein in Pfam
PF06472, ABC_membrane_2, 2 hits
PF00005, ABC_tran, 2 hits
SMARTiView protein in SMART
SM00382, AAA, 2 hits
SUPFAMiSSF52540, SSF52540, 2 hits
SSF90123, SSF90123, 2 hits
PROSITEiView protein in PROSITE
PS50929, ABC_TM1F, 2 hits
PS00211, ABC_TRANSPORTER_1, 2 hits
PS50893, ABC_TRANSPORTER_2, 2 hits

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiAB1D_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q94FB9
Secondary accession number(s): Q8VWH7, Q9SMR8
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 7, 2009
Last sequence update: December 1, 2001
Last modified: August 12, 2020
This is version 151 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
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