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Entry version 108 (12 Aug 2020)
Sequence version 2 (13 Jul 2010)
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Protein

Long-chain-alcohol oxidase FAO4B

Gene

FAO4B

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Long-chain fatty alcohol oxidase involved in the omega-oxidation pathway of lipid degradation.By similarity

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei679Proton acceptorBy similarity1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes a region in the protein which binds nucleotide phosphates. It always involves more than one amino acid and includes all residues involved in nucleotide-binding.<p><a href='/help/np_bind' target='_top'>More...</a></p>Nucleotide bindingi238 – 253FADSequence analysisAdd BLAST16

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionOxidoreductase
LigandFAD, Flavoprotein

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
ARA:GQT-559-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Long-chain-alcohol oxidase FAO4B (EC:1.1.3.20)
Alternative name(s):
Long-chain fatty alcohol oxidase 4B
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:FAO4B
Ordered Locus Names:At4g28570
ORF Names:T5F17.20
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 4

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT4G28570

The Arabidopsis Information Resource

More...
TAIRi
locus:2139895, AT4G28570

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei89 – 109HelicalSequence analysisAdd BLAST21
Transmembranei140 – 160HelicalSequence analysisAdd BLAST21

Keywords - Cellular componenti

Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003955061 – 748Long-chain-alcohol oxidase FAO4BAdd BLAST748

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q94BP3

PRoteomics IDEntifications database

More...
PRIDEi
Q94BP3

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
230851

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q94BP3, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q94BP3, AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
3702.AT4G28570.1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the GMC oxidoreductase family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG502QSD8, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_008878_1_1_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q94BP3

KEGG Orthology (KO)

More...
KOi
K17756

Identification of Orthologs from Complete Genome Data

More...
OMAi
GCPTNAK

Database of Orthologous Groups

More...
OrthoDBi
626762at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q94BP3

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.50.50.60, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR036188, FAD/NAD-bd_sf
IPR000172, GMC_OxRdtase_N
IPR007867, GMC_OxRtase_C
IPR012400, Long_Oxdase

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF05199, GMC_oxred_C, 1 hit
PF00732, GMC_oxred_N, 1 hit

PIRSF; a whole-protein classification database

More...
PIRSFi
PIRSF028937, Lg_Ch_AO, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF51905, SSF51905, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q94BP3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEDVRRRNRG HPLLRSKKRG EGYNHGFSPS QIQSLAVICQ TFLPPETTSE
60 70 80 90 100
QQAVNSFHVA SSTQPPFTDE VAEMIVKNGR SEAVKVLRII LMILSFRFGT
110 120 130 140 150
LLLCGSLCLD KSWPFVLKFS QLPLDKREAI LRNWSRQSGF LLPFRITFFL
160 170 180 190 200
AKFYTLFYFF SQTDENLKNP ALEAIGYCID GTERSSNKKS EADEKRRPLE
210 220 230 240 250
KGIIETMHES DVTITQSLTE KGVHVARDDG DNVYRIRCDA VVVGSGSGGG
260 270 280 290 300
VAAANLAKAG LKVLVLEKGN YFTAHDYSGL EVPSMLELYE KGGLLTTVDG
310 320 330 340 350
KFMLLAGSAV GGGTAVNWSA SIRTPDHVLQ EWSEGSKIKF FGSQEYQSAM
360 370 380 390 400
DEVTIRIGVT ERCVKHGFQN QVLRKGCERL GLQVESVPRN SPEDHYCGLC
410 420 430 440 450
GYGCRAGAKN GTDQTWLVDA VENGAVILTG IKAERFVLVD NTSSSNERKK
460 470 480 490 500
RCVGVFASSV GGKIGKKFII EARVTVSSAG SLLTPPLMLS SGLKNPNIGR
510 520 530 540 550
NLKLHPVLMT WGYFPEKDSE FSGKMYEGGI ITSVHHMNDT ESGCKAILEN
560 570 580 590 600
PLIGPASYAG LSPWVSGPDL KERMIKYGRT AHLFALVRDL GSGEVMMENE
610 620 630 640 650
VTYRTTKKDR ENLRAGLRQA LRVSVAAGAV EVGTYRSDGQ KMKCEAITKE
660 670 680 690 700
AMEEFLDEVD AVGGVGTKGE YWTTYFSAHQ MGSCRMGVTA EEGALDENGE
710 720 730 740
SWEAEGLFVC DGSILPSAVG VNPMITIQST AYCISSKIVD SLQNKTKV
Length:748
Mass (Da):81,959
Last modified:July 13, 2010 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i13CD183F5940DAC3
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti118K → R in AAK64154 (PubMed:14593172).Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AJ316231 mRNA Translation: CAC87644.1
AL161573 Genomic DNA Translation: CAB81445.1
CP002687 Genomic DNA Translation: AEE85508.1
CP002687 Genomic DNA Translation: ANM67935.1
AY039977 mRNA Translation: AAK64154.1
BT001942 mRNA Translation: AAN71941.1

Protein sequence database of the Protein Information Resource

More...
PIRi
T10651

NCBI Reference Sequences

More...
RefSeqi
NP_001320082.1, NM_001341924.1
NP_194586.1, NM_118999.5

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT4G28570.1; AT4G28570.1; AT4G28570
AT4G28570.2; AT4G28570.2; AT4G28570

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
828975

Gramene; a comparative resource for plants

More...
Gramenei
AT4G28570.1; AT4G28570.1; AT4G28570
AT4G28570.2; AT4G28570.2; AT4G28570

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT4G28570

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ316231 mRNA Translation: CAC87644.1
AL161573 Genomic DNA Translation: CAB81445.1
CP002687 Genomic DNA Translation: AEE85508.1
CP002687 Genomic DNA Translation: ANM67935.1
AY039977 mRNA Translation: AAK64154.1
BT001942 mRNA Translation: AAN71941.1
PIRiT10651
RefSeqiNP_001320082.1, NM_001341924.1
NP_194586.1, NM_118999.5

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi3702.AT4G28570.1

Proteomic databases

PaxDbiQ94BP3
PRIDEiQ94BP3
ProteomicsDBi230851

Genome annotation databases

EnsemblPlantsiAT4G28570.1; AT4G28570.1; AT4G28570
AT4G28570.2; AT4G28570.2; AT4G28570
GeneIDi828975
GrameneiAT4G28570.1; AT4G28570.1; AT4G28570
AT4G28570.2; AT4G28570.2; AT4G28570
KEGGiath:AT4G28570

Organism-specific databases

AraportiAT4G28570
TAIRilocus:2139895, AT4G28570

Phylogenomic databases

eggNOGiENOG502QSD8, Eukaryota
HOGENOMiCLU_008878_1_1_1
InParanoidiQ94BP3
KOiK17756
OMAiGCPTNAK
OrthoDBi626762at2759
PhylomeDBiQ94BP3

Enzyme and pathway databases

BioCyciARA:GQT-559-MONOMER

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q94BP3

Gene expression databases

ExpressionAtlasiQ94BP3, baseline and differential
GenevisibleiQ94BP3, AT

Family and domain databases

Gene3Di3.50.50.60, 1 hit
InterProiView protein in InterPro
IPR036188, FAD/NAD-bd_sf
IPR000172, GMC_OxRdtase_N
IPR007867, GMC_OxRtase_C
IPR012400, Long_Oxdase
PfamiView protein in Pfam
PF05199, GMC_oxred_C, 1 hit
PF00732, GMC_oxred_N, 1 hit
PIRSFiPIRSF028937, Lg_Ch_AO, 1 hit
SUPFAMiSSF51905, SSF51905, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiFAO4B_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q94BP3
Secondary accession number(s): Q9M0H4
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 13, 2010
Last sequence update: July 13, 2010
Last modified: August 12, 2020
This is version 108 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
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