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Entry version 100 (12 Aug 2020)
Sequence version 1 (01 Dec 2001)
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Protein

Protein OBERON 3

Gene

OBE3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Probable transcription factor that functions redundantly with OBE4 in specification of the hypophysis and establishment of the embryonic root (PubMed:22378640). Involved in the activation of ARF5/MP-dependent gene expression during embryonic root meristem initiation (PubMed:22378640). Involved in shoot meristem homeostasis (PubMed:27196372).2 Publications

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section specifies the position(s) and type(s) of zinc fingers within the protein.<p><a href='/help/zn_fing' target='_top'>More...</a></p>Zinc fingeri436 – 500PHD-typeAdd BLAST65

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processTranscription, Transcription regulation
LigandMetal-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Protein OBERON 3Curated
Alternative name(s):
Protein TITANIA 11 Publication
Protein WUS ENHANCER 91 Publication
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:OBE31 Publication
Synonyms:WEN91 Publication
Ordered Locus Names:At1g14740Imported
ORF Names:F10B6.14Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT1G14740

The Arabidopsis Information Resource

More...
TAIRi
locus:2006837, AT1G14740

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the 'Pathology and Biotech' section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

No visible phenotype under normal growth conditions, but the double mutants tta1 and tta2 exhibit a rootless phenotype and seedling lethality (PubMed:22378640). No visible phenotype under normal growth conditions, but the double mutants obe3-2 and obe4-2 exhibit broad growth defects and developmental arrest of seedlings (PubMed:27196372).2 Publications

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003997481 – 733Protein OBERON 3Add BLAST733

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q94B71

PRoteomics IDEntifications database

More...
PRIDEi
Q94B71

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
250853

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q94B71

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the 'Expression' section provides information on the expression of the gene product at various stages of a cell, tissue or organism development. By default, the information is derived from experiments at the mRNA level, unless specified 'at the protein level'.<p><a href='/help/developmental_stage' target='_top'>More...</a></p>Developmental stagei

Expressed in the two-cell stage embryo (PubMed:22378640). At early globular embryo stage, expressed both in the basal region of embryo proper and suspensor cells (PubMed:22378640). At heart and torpedo embryo stages expressed in the basal region apical regions of the embryo proper (PubMed:22378640).1 Publication

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q94B71, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q94B71, AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Self-interacts (PubMed:22378640).

Interacts with OBE1 and OBE2 (PubMed:19392692, PubMed:22378640).

Interacts with OBE4 (PubMed:22378640).

2 Publications

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...
BioGRIDi
23279, 5 interactors

Protein interaction database and analysis system

More...
IntActi
Q94B71, 2 interactors

STRING: functional protein association networks

More...
STRINGi
3702.AT1G14740.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
Q94B71

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili120 – 153Sequence analysisAdd BLAST34
Coiled coili644 – 733Sequence analysisAdd BLAST90

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri436 – 500PHD-typeAdd BLAST65

Keywords - Domaini

Coiled coil, Zinc-finger

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG502QPTA, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_006737_3_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q94B71

Identification of Orthologs from Complete Genome Data

More...
OMAi
VFLCCAK

Database of Orthologous Groups

More...
OrthoDBi
340123at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q94B71

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR004082, OBERON
IPR032535, Oberon_cc
IPR032881, Oberon_PHD

The PANTHER Classification System

More...
PANTHERi
PTHR21736, PTHR21736, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF16312, Oberon_cc, 1 hit
PF07227, PHD_Oberon, 1 hit

Protein Motif fingerprint database; a protein domain database

More...
PRINTSi
PR01544, ARATH130DUF

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q94B71-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MIGEKDLAGD GECSRTKTSK PRFSNLNNQT HQDDKTGQYH QKGVDFLNVR
60 70 80 90 100
SNNLDGGFSS KSSPRSGNEL TLSYLCENSG KLAESLGQKG KEVVTFSENS
110 120 130 140 150
SYDDKWVERD FFNLREMNPN SSKRKAHEEE EEAEEEEDKK SNKIETLNLS
160 170 180 190 200
LALPDVSLSL TASNAVKRPR VVTSERTTTS FSNDFTATAP SMSYSYSHPF
210 220 230 240 250
SHNISCSMTR NSTDFDCSVG KDDHIWCAGE GTNGSVHSRF RPIGDGGVAL
260 270 280 290 300
ANNPVSGKPS SSADYSFFPS ELPARPGNEV TISGDSRKKV ANLEDNDAVR
310 320 330 340 350
SERVLYDIVS KSISSVALII QGMADETLES AKEYLRNLID SPEKKEKLVN
360 370 380 390 400
LQNQIDKRSD LSKETLSKCV KDQLDILVAV RTGLKYFLSG KIRIPMNELV
410 420 430 440 450
EIFLFLRCRN VNCKSLLPVD DCECKICSNN KGFCSSCMCP VCLRFDSASN
460 470 480 490 500
TCSWVGCDVC SHWCHAACGI QKNLIKPGHS LKGQRGTTEM MFHCIGCAHK
510 520 530 540 550
SEMFGFVKDV FVCCAKNWGL ETLIKELDCV RKVFRGSDDA KGKALHLKAN
560 570 580 590 600
EMVKKLESKQ ISPLDASNFI IQFFNYAESI PEIPDPPREL TVAAETSYRK
610 620 630 640 650
DEASVTPSTS KDQKKKSFAL TDAMMNSFDS LESMVRIKEA ETRMFQKKAD
660 670 680 690 700
EARIEAESFK RMIEMKTEKM EEEYTEKLAR LCLQETEERR RNKLEELKKL
710 720 730
ENSHCDYRNM KLRMEAEIAG LLKRMEVTRQ QLV
Length:733
Mass (Da):82,389
Last modified:December 1, 2001 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i6B8B010CF4316455
GO

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAF79245 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC006917 Genomic DNA Translation: AAF79245.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE29216.1
AY042810 mRNA Translation: AAK68750.1
AY081688 mRNA Translation: AAM10250.1

Protein sequence database of the Protein Information Resource

More...
PIRi
F86281

NCBI Reference Sequences

More...
RefSeqi
NP_563958.1, NM_101343.2

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT1G14740.1; AT1G14740.1; AT1G14740

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
838039

Gramene; a comparative resource for plants

More...
Gramenei
AT1G14740.1; AT1G14740.1; AT1G14740

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT1G14740

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006917 Genomic DNA Translation: AAF79245.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE29216.1
AY042810 mRNA Translation: AAK68750.1
AY081688 mRNA Translation: AAM10250.1
PIRiF86281
RefSeqiNP_563958.1, NM_101343.2

3D structure databases

SMRiQ94B71
ModBaseiSearch...

Protein-protein interaction databases

BioGRIDi23279, 5 interactors
IntActiQ94B71, 2 interactors
STRINGi3702.AT1G14740.1

PTM databases

iPTMnetiQ94B71

Proteomic databases

PaxDbiQ94B71
PRIDEiQ94B71
ProteomicsDBi250853

Genome annotation databases

EnsemblPlantsiAT1G14740.1; AT1G14740.1; AT1G14740
GeneIDi838039
GrameneiAT1G14740.1; AT1G14740.1; AT1G14740
KEGGiath:AT1G14740

Organism-specific databases

AraportiAT1G14740
TAIRilocus:2006837, AT1G14740

Phylogenomic databases

eggNOGiENOG502QPTA, Eukaryota
HOGENOMiCLU_006737_3_0_1
InParanoidiQ94B71
OMAiVFLCCAK
OrthoDBi340123at2759
PhylomeDBiQ94B71

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q94B71

Gene expression databases

ExpressionAtlasiQ94B71, baseline and differential
GenevisibleiQ94B71, AT

Family and domain databases

InterProiView protein in InterPro
IPR004082, OBERON
IPR032535, Oberon_cc
IPR032881, Oberon_PHD
PANTHERiPTHR21736, PTHR21736, 1 hit
PfamiView protein in Pfam
PF16312, Oberon_cc, 1 hit
PF07227, PHD_Oberon, 1 hit
PRINTSiPR01544, ARATH130DUF

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiOBE3_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q94B71
Secondary accession number(s): Q9LQV7
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 5, 2010
Last sequence update: December 1, 2001
Last modified: August 12, 2020
This is version 100 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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