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Protein

AT-rich interactive domain-containing protein 3

Gene

ARID3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • DNA-binding transcription activator activity, RNA polymerase II-specific Source: GO_Central
  • DNA-binding transcription factor activity Source: TAIR
  • RNA polymerase II regulatory region sequence-specific DNA binding Source: GO_Central

GO - Biological processi

  • regulation of transcription, DNA-templated Source: TAIR

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
AT-rich interactive domain-containing protein 3
Short name:
ARID domain-containing protein 3
Gene namesi
Name:ARID3
Ordered Locus Names:At2g17410
ORF Names:F5J6.17
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G17410
TAIRilocus:2827523 AT2G17410

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004132111 – 786AT-rich interactive domain-containing protein 3Add BLAST786

Proteomic databases

PaxDbiQ940Y3
PRIDEiQ940Y3

PTM databases

iPTMnetiQ940Y3

Expressioni

Gene expression databases

ExpressionAtlasiQ940Y3 baseline and differential
GenevisibleiQ940Y3 AT

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
ARID6C0SUW74EBI-15193099,EBI-15192335

Protein-protein interaction databases

BioGridi1604, 3 interactors
IntActiQ940Y3, 5 interactors
STRINGi3702.AT2G17410.1

Structurei

3D structure databases

ProteinModelPortaliQ940Y3
SMRiQ940Y3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini494 – 585ARIDPROSITE-ProRule annotationAdd BLAST92
Domaini686 – 786sHSPPROSITE-ProRule annotationAdd BLAST101

Sequence similaritiesi

Belongs to the small heat shock protein (HSP20) family.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG2744 Eukaryota
ENOG410Y2AP LUCA
HOGENOMiHOG000151156
InParanoidiQ940Y3
OMAiEEHDMTS
OrthoDBiEOG09360E30
PhylomeDBiQ940Y3

Family and domain databases

Gene3Di1.10.150.60, 1 hit
2.60.40.790, 1 hit
InterProiView protein in InterPro
IPR002068 A-crystallin/Hsp20_dom
IPR001606 ARID_dom
IPR036431 ARID_dom_sf
IPR008978 HSP20-like_chaperone
PfamiView protein in Pfam
PF01388 ARID, 1 hit
PF00011 HSP20, 1 hit
SMARTiView protein in SMART
SM00501 BRIGHT, 1 hit
SUPFAMiSSF46774 SSF46774, 1 hit
SSF49764 SSF49764, 1 hit
PROSITEiView protein in PROSITE
PS51011 ARID, 1 hit
PS01031 SHSP, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket
Note: A number of isoforms are produced. According to EST sequences.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Isoform 1 (identifier: Q940Y3-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MENLTEIEST MESLTEMESE RVEQGTDKEI GSGEKRQDDV KETENENSGE
60 70 80 90 100
RVGEEAPVRE HEDSPCLIVI EEGTSLASLE EVTNADDLPK IDDEKNSQFE
110 120 130 140 150
TSPHPSPSPS VALDTEEGLI NPTAEDTVEE NIVSSEVSSD ILKDDGDAVE
160 170 180 190 200
VDRDTAEVQE ETANIPESKL SEDTGSPHHH ADILMVQEKA AEEHDMIASG
210 220 230 240 250
DHEEFPVNPD NKHSEENQSP HHHANNVMEQ DQAAEEREII SPGEHKEIPA
260 270 280 290 300
NPDTKVVEEN NDRIDEGEAN NLNLAGDGSG AVDHDYLTKT ELDKVLEVPG
310 320 330 340 350
SETISKLEDR PSEHLSETSM NVEKELEMPA VEILPDNDKN SDVLAVGVSG
360 370 380 390 400
DSDNVVSVLP ASQTSSDRDE GMITVDAEPT EDMKLDVPDS KLVTDTTVDS
410 420 430 440 450
TNNKDAHVEA NTERQDNSSA LVLNDANNES APVKRVPGPY VASSNIKSEA
460 470 480 490 500
RGSGDLNNGV HKIVRTPPVF DGTMRAKRSF LLDDASDGNE SGTEEDQSAF
510 520 530 540 550
MKELDSFFRE RNMDFKPPKF YGEGLNCLKL WRAVTRLGGY DKVTGSKLWR
560 570 580 590 600
QVGESFRPPK TCTTVSWTFR GFYEKALLEY ERHKVSEGEL QIPLPLELEP
610 620 630 640 650
MNIDNQASGS GRARRDAASR AMQGWHSQRL NGNGEVSDPA IKDKNLVLHQ
660 670 680 690 700
KREKQIGTTP GLLKRKRAAE HGAKNAIHVS KSMLDVTVVD VGPPADWVKI
710 720 730 740 750
NVQRTQDCFE VYALVPGLVR EEVRVQSDPA GRLVISGEPE NPMNPWGATP
760 770 780
FKKVVSLPTR IDPHHTSAVV TLNGQLFVRV PLEQLE
Length:786
Mass (Da):86,570
Last modified:December 1, 2001 - v1
Checksum:i48C4123008B83D3A
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F4INH0F4INH0_ARATH
ARID/BRIGHT DNA-binding domain-cont...
At2g17400, At2g17410, F5J6.17, F5J6_17
780Annotation score:

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti662L → S in BAD44145 (Ref. 4) Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002685 Genomic DNA Translation: AEC06621.1
CP002685 Genomic DNA Translation: ANM63318.1
AY052359 mRNA Translation: AAK96550.1
BT002633 mRNA Translation: AAO11549.1
AK176382 mRNA Translation: BAD44145.1
AK230281 mRNA Translation: BAF02083.1
PIRiG84551
RefSeqiNP_001325412.1, NM_001335547.1 [Q940Y3-1]
NP_179333.2, NM_127296.3 [Q940Y3-1]
UniGeneiAt.12107

Genome annotation databases

EnsemblPlantsiAT2G17410.1; AT2G17410.1; AT2G17410 [Q940Y3-1]
AT2G17410.3; AT2G17410.3; AT2G17410 [Q940Y3-1]
GeneIDi816247
GrameneiAT2G17410.1; AT2G17410.1; AT2G17410 [Q940Y3-1]
AT2G17410.3; AT2G17410.3; AT2G17410 [Q940Y3-1]
KEGGiath:AT2G17410

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002685 Genomic DNA Translation: AEC06621.1
CP002685 Genomic DNA Translation: ANM63318.1
AY052359 mRNA Translation: AAK96550.1
BT002633 mRNA Translation: AAO11549.1
AK176382 mRNA Translation: BAD44145.1
AK230281 mRNA Translation: BAF02083.1
PIRiG84551
RefSeqiNP_001325412.1, NM_001335547.1 [Q940Y3-1]
NP_179333.2, NM_127296.3 [Q940Y3-1]
UniGeneiAt.12107

3D structure databases

ProteinModelPortaliQ940Y3
SMRiQ940Y3
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi1604, 3 interactors
IntActiQ940Y3, 5 interactors
STRINGi3702.AT2G17410.1

PTM databases

iPTMnetiQ940Y3

Proteomic databases

PaxDbiQ940Y3
PRIDEiQ940Y3

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G17410.1; AT2G17410.1; AT2G17410 [Q940Y3-1]
AT2G17410.3; AT2G17410.3; AT2G17410 [Q940Y3-1]
GeneIDi816247
GrameneiAT2G17410.1; AT2G17410.1; AT2G17410 [Q940Y3-1]
AT2G17410.3; AT2G17410.3; AT2G17410 [Q940Y3-1]
KEGGiath:AT2G17410

Organism-specific databases

AraportiAT2G17410
TAIRilocus:2827523 AT2G17410

Phylogenomic databases

eggNOGiKOG2744 Eukaryota
ENOG410Y2AP LUCA
HOGENOMiHOG000151156
InParanoidiQ940Y3
OMAiEEHDMTS
OrthoDBiEOG09360E30
PhylomeDBiQ940Y3

Miscellaneous databases

PROiPR:Q940Y3

Gene expression databases

ExpressionAtlasiQ940Y3 baseline and differential
GenevisibleiQ940Y3 AT

Family and domain databases

Gene3Di1.10.150.60, 1 hit
2.60.40.790, 1 hit
InterProiView protein in InterPro
IPR002068 A-crystallin/Hsp20_dom
IPR001606 ARID_dom
IPR036431 ARID_dom_sf
IPR008978 HSP20-like_chaperone
PfamiView protein in Pfam
PF01388 ARID, 1 hit
PF00011 HSP20, 1 hit
SMARTiView protein in SMART
SM00501 BRIGHT, 1 hit
SUPFAMiSSF46774 SSF46774, 1 hit
SSF49764 SSF49764, 1 hit
PROSITEiView protein in PROSITE
PS51011 ARID, 1 hit
PS01031 SHSP, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiARID3_ARATH
AccessioniPrimary (citable) accession number: Q940Y3
Secondary accession number(s): Q67YT6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 19, 2011
Last sequence update: December 1, 2001
Last modified: November 7, 2018
This is version 116 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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Main funding by: National Institutes of Health

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