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Entry version 138 (17 Jun 2020)
Sequence version 1 (01 Dec 2001)
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Protein
Submitted name:

ARM repeat superfamily protein

Gene

emb2734

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
ARM repeat superfamily proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:emb2734Imported
Synonyms:embryo defective 2734Imported
Ordered Locus Names:At5g19820Imported
ORF Names:T29J13.240Imported, T29J13_240Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 5

Organism-specific databases

Arabidopsis Information Portal

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Araporti
AT5G19820

The Arabidopsis Information Resource

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TAIRi
locus:2183219 AT5G19820

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
181787

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

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STRINGi
3702.AT5G19820.1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini361 – 606TOGInterPro annotationAdd BLAST246
<p>This subsection of the 'Family and Domains' section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati925 – 957HEATPROSITE-ProRule annotationAdd BLAST33

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
KOG2171 Eukaryota
ENOG410XQAJ LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_003794_0_1_1

KEGG Orthology (KO)

More...
KOi
K20222

Identification of Orthologs from Complete Genome Data

More...
OMAi
AQYLMHC

Database of Orthologous Groups

More...
OrthoDBi
90499at2759

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR016024 ARM-type_fold
IPR000357 HEAT
IPR021133 HEAT_type_2
IPR040122 Importin_beta
IPR041653 Importin_rep_4
IPR034085 TOG

The PANTHER Classification System

More...
PANTHERi
PTHR10527 PTHR10527, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF02985 HEAT, 1 hit
PF18808 Importin_rep_4, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM01349 TOG, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF48371 SSF48371, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50077 HEAT_REPEAT, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q93VS8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MASEANQLQQ AQLAMVLGSD SAPFETLISH LMSSSNEQRS SAESLFNLAK
60 70 80 90 100
QSNPDTLSLK LAHLLQLSPH PEGRAMAAVL LRKLLTRDDA YLWPRLSLST
110 120 130 140 150
QSSLKSSMLY CIQHEEAKSI SKKICDTVSE LASGILPENG WPELLPFVFQ
160 170 180 190 200
CVTSVTPKLQ ESAFLILAQL SQYVGETLTP HIKELHGVFL QCLSSNSASS
210 220 230 240 250
DVKIAALNAV ISFVQCLANS TERDRFQDVL PAMIRTLTES LNNGNEATAQ
260 270 280 290 300
EALELLIELA GTEPRFLRRQ LVDIVGSMLQ IAEADSLEES TRHLAIEFLV
310 320 330 340 350
TLAEARERAP GMVRKLPQFI DRLFAVLMKM LEDIEDDPAW YSAETEDEDA
360 370 380 390 400
GETSNYSMGQ ECLDRLAISL GGNTIVPVAY QQFSAYLAAS EWQKHHASLI
410 420 430 440 450
ALAQIAEGCS KVMIKNLDQV VSMVLSQFQS PHPRVRWAAI NAIGQLSTDL
460 470 480 490 500
GPDLQNQHHE RVLPALAAAM DDFQNPRVQA HAASAVLNFS ENCTPEILSP
510 520 530 540 550
YLDGVVSKLL VLLQNGKQMV QEGALTALAS VADSSQEHFQ KYYDTVMPYL
560 570 580 590 600
KTILMNATDK SKRMLRAKSM ECISLVGMAV GKDRFKEDAR QVMEVLMSLQ
610 620 630 640 650
GSQMEADDPI TSYMLQAWAR LCKCLGQDFL PYMKVVMPPL LQSAQLKPDV
660 670 680 690 700
TITSADSEDE AEDSDDESME TIILGDKRIG IKTSVLEEKA TACNMLCCYA
710 720 730 740 750
DELKEGFFPW IDQVAPTLVP LLKFYFHEEV RRAAVSAMPE LMRSAKLAIE
760 770 780 790 800
KGESQGRDLS YLKQLSDYII PAMLEALHKE PDTEICVSML EAINECLQIS
810 820 830 840 850
GNLLDEGKIR SIVDEIKQVM TASSSRKRER GERAHAEDFD AEEGELIKEE
860 870 880 890 900
NEQEEEIFDQ VGEILGTLVK TFKASFLPFF DELSSYLTPM WGRDKTAEER
910 920 930 940 950
RIAICIFDDV AEQCREAAFK YYDTYLPFVL EACNDESPEV RQAAVYGLGV
960 970 980 990 1000
CAEFGGSVFK PLIGEALSRL NVVIQLPNAR QSENAMAYDN AVSAVGKICQ
1010 1020 1030 1040 1050
FHRDSIDSSQ VLPAWLNCLP ISNDVLEAKV VHDQLCSMVE RQDVDLLGPN
1060 1070 1080 1090 1100
NQHLPKILIV FAEVLTGKDV VTQETAGRMI NILRQLQQTL PPSALASTWS
1110
TLKPEQQLAL QSMLSS
Length:1,116
Mass (Da):123,826
Last modified:December 1, 2001 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i8B21A80A59204E7C
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AY035044 mRNA Translation: AAK59549.1
AY051083 mRNA Translation: AAK93760.1
CP002688 Genomic DNA Translation: AED92752.1

NCBI Reference Sequences

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RefSeqi
NP_197483.1, NM_121987.3

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT5G19820.1; AT5G19820.1; AT5G19820

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
832102

Gramene; a comparative resource for plants

More...
Gramenei
AT5G19820.1; AT5G19820.1; AT5G19820

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT5G19820

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY035044 mRNA Translation: AAK59549.1
AY051083 mRNA Translation: AAK93760.1
CP002688 Genomic DNA Translation: AED92752.1
RefSeqiNP_197483.1, NM_121987.3

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

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SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi3702.AT5G19820.1

Proteomic databases

ProteomicsDBi181787

Genome annotation databases

EnsemblPlantsiAT5G19820.1; AT5G19820.1; AT5G19820
GeneIDi832102
GrameneiAT5G19820.1; AT5G19820.1; AT5G19820
KEGGiath:AT5G19820

Organism-specific databases

AraportiAT5G19820
TAIRilocus:2183219 AT5G19820

Phylogenomic databases

eggNOGiKOG2171 Eukaryota
ENOG410XQAJ LUCA
HOGENOMiCLU_003794_0_1_1
KOiK20222
OMAiAQYLMHC
OrthoDBi90499at2759

Family and domain databases

InterProiView protein in InterPro
IPR016024 ARM-type_fold
IPR000357 HEAT
IPR021133 HEAT_type_2
IPR040122 Importin_beta
IPR041653 Importin_rep_4
IPR034085 TOG
PANTHERiPTHR10527 PTHR10527, 1 hit
PfamiView protein in Pfam
PF02985 HEAT, 1 hit
PF18808 Importin_rep_4, 1 hit
SMARTiView protein in SMART
SM01349 TOG, 1 hit
SUPFAMiSSF48371 SSF48371, 1 hit
PROSITEiView protein in PROSITE
PS50077 HEAT_REPEAT, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ93VS8_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q93VS8
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: June 17, 2020
This is version 138 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Proteomics identificationCombined sources, Reference proteomeImported
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