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Entry version 103 (07 Oct 2020)
Sequence version 1 (01 Dec 2001)
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Protein
Submitted name:

Conjugative transfer: oriT nicking-unwinding

Gene

traI

Organism
Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Conjugative transfer: oriT nicking-unwindingImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:traIImported
Ordered Locus Names:PSLT108Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates if the gene coding for the protein originates from the hydrogenosome, the mitochondrion, the nucleomorph, different plastids or a plasmid. The absence of this section means that the gene is located in one of the main chromosomal element(s).<p><a href='/help/encoded_on' target='_top'>More...</a></p>Encoded oniPlasmid pSLTImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSalmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri99287 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeSalmonella
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001014 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Plasmid pSLT

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini11 – 282TrwCInterPro annotationAdd BLAST272
Domaini574 – 626ssDNA_TraI_NInterPro annotationAdd BLAST53
Domaini632 – 711TraI_2BInterPro annotationAdd BLAST80
Domaini1430 – 1552TraIInterPro annotationAdd BLAST123

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni62 – 81DisorderedSequence analysisAdd BLAST20
Regioni1685 – 1752DisorderedSequence analysisAdd BLAST68

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1692 – 1752PolyampholyteSequence analysisAdd BLAST61

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_001748_2_1_6

Identification of Orthologs from Complete Genome Data

More...
OMAi
STWETHR

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR014059, Conjug_relaxase_N
IPR014129, Conjug_relaxase_TraI
IPR009767, DNA_helicase_TraI
IPR027417, P-loop_NTPase
IPR040668, TraI_2B
IPR040987, TraI_N
IPR014862, TrwC

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF18272, ssDNA_TraI_N, 1 hit
PF07057, TraI, 1 hit
PF18340, TraI_2B, 1 hit
PF08751, TrwC, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52540, SSF52540, 2 hits

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR02686, relax_trwC, 1 hit
TIGR02760, TraI_TIGR, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q93GL4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MMSIAQVRSA GSAAGYYSDR DNYYVLGSME ERWAGKGAEQ LGLQGTVDKE
60 70 80 90 100
VFTRVLEGRL PDGADLSRQQ DGGNKHRPGY DLTFSAPKSV SLMAMLAGDK
110 120 130 140 150
RLTEAHNQAV DIAVRQVEAL ASTRVMTDGQ SETVLTGNLV MALFNHDTSR
160 170 180 190 200
DQEPQLHTHA VVVNVTQHDG EWKTLSSDKV GKTGFIENVY ANQIAFGKIY
210 220 230 240 250
RAVLKEKVEA LGYETEVVGK HGMWEMPGVP VEAFSSRSQA IREAVGEDAS
260 270 280 290 300
LKSRDVAALD TRKSKQHVDP EVKMAEWMQT LKDTGFDISA YRESADRRAE
310 320 330 340 350
IQAAQPVPSQ EQPDIQQAVT QAIAGLSDRK VQFTYTDVLA RTVGMLPPEA
360 370 380 390 400
GVIEKARAGI DEAISREQLI PLDREKGLFT SGIHVLDELS VRALSSDIMK
410 420 430 440 450
QNRVTVHPEK SVPRTGSYSD AVSVLAQDRP SLAIISGQGG AAGQRERVAE
460 470 480 490 500
LTMMAREQGR EVQIIVADRR SQTNLKQDER LSGELITGRR QLQEGMLFSP
510 520 530 540 550
GSTVIVDQGE KLSLKETLTL LDGAARHNVQ VLITDSGQRT GTGSALMAMK
560 570 580 590 600
EAGVNSYRWQ GRQQTPATVI SEPDRNVRYA RLAGDFVAAV KAGEESVAQV
610 620 630 640 650
SGMREQAILA GMIRSELKTQ GILGQQDTMM TALSPVWLDS RNRYLRDMYR
660 670 680 690 700
EGMVMEQWNP EKRSHDRYVI DRVTAQSHSL TLRDAQGETQ MVRISALDSS
710 720 730 740 750
WSLFRPEKMP VADGERLMVT GKIPGLRVSV GDRLQVSAVN DGVMTVTVPG
760 770 780 790 800
RAEPASLPVG DSPFTALKLE NGWVETPGHS VSDSAKVFAS VTQMAMDNAT
810 820 830 840 850
LNSLARSGRD VRLYSSLDET RTAEKLSRHP SFTVVSEQIK ARAGEVSLET
860 870 880 890 900
AISRQKAGLH TPAQQAIHLA LPVVESKNLA FSQVDLLTEA KSFAAEGTGF
910 920 930 940 950
ADLGREIDAQ IKRGDLLYVD VAKGYGTDLL ISRASYDAEK SILHHILEGK
960 970 980 990 1000
EAVTPLMERV PGELMETLTS GQRAATRMIL ETKDRFTVVQ GYAGVGKTTQ
1010 1020 1030 1040 1050
FRAVMSAVNL LPESERPRVV GLGPTHRAVG EMRSAGVEAQ TLASFLHDTQ
1060 1070 1080 1090 1100
LQQRSGETPD FSNTLFLLDE SSMVGNTDMA RAYALIAAGG GRAVASGDTD
1110 1120 1130 1140 1150
QLQAIAPGQP FRLQQTRSAA DVAIMKEIVR QTPELRDAVY SLINRDVNKA
1160 1170 1180 1190 1200
LSGLENVKPV QVPRLKGAWA PENSVTEFSR LQERELAKAA QEAEKKGEAF
1210 1220 1230 1240 1250
PDVPVTLYEA IVRDYTGRTP EAREQTLIVT HLNEDRRVLN SMIQDALAKP
1260 1270 1280 1290 1300
GEQQVTVPVL TTANIRDGEL RRLSTWEAHP GALALVDNVY HRIAGISKED
1310 1320 1330 1340 1350
GLITLEDKAG NTRLISPREA AAEGVTLYNP ETIRVGAGDR MRFTKSDRER
1360 1370 1380 1390 1400
GYVANSVWTV TAVSGDSVTL SDGKQTRVVR PGQDRAEQHI DLAYAITAHS
1410 1420 1430 1440 1450
AQGASETFAI ALEGTEGGRK QMAGFESAYV ALSRMKQHVQ VYTDDRQGWV
1460 1470 1480 1490 1500
KAINSAEQKG TAHDVLEPKS EREMMNAERL FSTARELRDV AAGRAVLRNA
1510 1520 1530 1540 1550
GLAQGDSRAR FIAPGRKYPQ PYVALPAFDR NGKSAGIWLN PLTTDDGAGL
1560 1570 1580 1590 1600
RGFTGEGRVK GSEEAQFVAL QGSRNGESLL AGSMQDGVRI ARENPDSGVV
1610 1620 1630 1640 1650
VRIVGDGRPW NPVAITGGRV WGDIPDSNVQ PGAGNGEPVT AEILAQRQAE
1660 1670 1680 1690 1700
EAVRRETERR ADEIVRKMAE DKSDLPEEKT AQAVREIAGQ EQDRMTPPER
1710 1720 1730 1740 1750
EPPLPESVLR EPQRERETIR EVARENRGRE RLQQMEQEMV RDLQKEKTPG

GD
Length:1,752
Mass (Da):191,684
Last modified:December 1, 2001 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i6182AC451D5BE1F8
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AE006471 Genomic DNA Translation: AAL23509.1

NCBI Reference Sequences

More...
RefSeqi
NP_490592.1, NC_003277.2
WP_000986921.1, NC_003277.2

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
AAL23509; AAL23509; PSLT108

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
1256130

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
stm:PSLT108

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|99287.12.peg.4974

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006471 Genomic DNA Translation: AAL23509.1
RefSeqiNP_490592.1, NC_003277.2
WP_000986921.1, NC_003277.2

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiAAL23509; AAL23509; PSLT108
GeneIDi1256130
KEGGistm:PSLT108
PATRICifig|99287.12.peg.4974

Phylogenomic databases

HOGENOMiCLU_001748_2_1_6
OMAiSTWETHR

Family and domain databases

InterProiView protein in InterPro
IPR014059, Conjug_relaxase_N
IPR014129, Conjug_relaxase_TraI
IPR009767, DNA_helicase_TraI
IPR027417, P-loop_NTPase
IPR040668, TraI_2B
IPR040987, TraI_N
IPR014862, TrwC
PfamiView protein in Pfam
PF18272, ssDNA_TraI_N, 1 hit
PF07057, TraI, 1 hit
PF18340, TraI_2B, 1 hit
PF08751, TrwC, 1 hit
SUPFAMiSSF52540, SSF52540, 2 hits
TIGRFAMsiTIGR02686, relax_trwC, 1 hit
TIGR02760, TraI_TIGR, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ93GL4_SALTY
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q93GL4
Secondary accession number(s): E0D8I8
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: October 7, 2020
This is version 103 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

PlasmidImported, Reference proteomeImported
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