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Entry version 111 (02 Jun 2021)
Sequence version 1 (01 Dec 2001)
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Protein
Submitted name:

Putative integrase [Bacteriophage A118]

Gene

int

Organism
Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei10O-(5'-phospho-DNA)-serine intermediateUniRule annotation1
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the 'Description' field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi274ZincCombined sources1
Metal bindingi276Zinc; via carbonyl oxygenCombined sources1
Metal bindingi277ZincCombined sources1
Metal bindingi302ZincCombined sources1
Metal bindingi314ZincCombined sources1
Metal bindingi334CalciumCombined sources1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDNA-bindingARBA annotation
Biological processDNA integrationARBA annotation, DNA recombinationARBA annotation
LigandCalciumCombined sources, Metal-bindingCombined sources, ZincCombined sources

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Putative integrase [Bacteriophage A118]Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:intImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiListeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri272626 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesListeriaceaeListeria
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002513 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
272626.lin2426

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
Q928V6

Database of comparative protein structure models

More...
ModBasei
Search...

Protein Data Bank in Europe - Knowledge Base

More...
PDBe-KBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini2 – 147Resolvase/invertase-type recombinase catalyticInterPro annotationAdd BLAST146
Domaini157 – 257RecombinaseInterPro annotationAdd BLAST101

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili341 – 361Sequence analysisAdd BLAST21
Coiled coili393 – 413Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
COG1961, Bacteria

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_010686_18_3_9

Identification of Orthologs from Complete Genome Data

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OMAi
HDVSIPD

Database of Orthologous Groups

More...
OrthoDBi
1791095at2

Family and domain databases

Database of protein disorder

More...
DisProti
DP02495

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.10.10.2600, 1 hit
3.40.50.1390, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR038109, DNA_bind_recomb_sf
IPR011109, DNA_bind_recombinase_dom
IPR006118, Recombinase_CS
IPR006119, Resolv_N
IPR036162, Resolvase-like_N_sf
IPR025827, Zn_ribbon_recom_dom

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF07508, Recombinase, 1 hit
PF00239, Resolvase, 1 hit
PF13408, Zn_ribbon_recom, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00857, Resolvase, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF53041, SSF53041, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51737, RECOMBINASE_DNA_BIND, 1 hit
PS00397, RECOMBINASES_1, 1 hit
PS51736, RECOMBINASES_3, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q928V6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKAAIYIRVS TQEQVENYSI QAQTEKLTAL CRSKDWDVYD TFIDGGYSGS
60 70 80 90 100
NMNRPALNEM LSKLHEIDAV VVYRLDRLSR SQKDTITLIE EYFLKNNVEF
110 120 130 140 150
VSLSETLDTS SPFGRAMIGI LSVFAQLERE TIRDRMVMGK IKRIEAGLPL
160 170 180 190 200
TTAKGRTFGY DVIDTKLYIN EEEAKQLRLI YDIFEEEQSI TFLQKRLKKL
210 220 230 240 250
GFKVRTYNRY NNWLTNDLYC GYVSYKDKVH VKGIHEPIIS EEQFYRVQEI
260 270 280 290 300
FSRMGKNPNM NKESASLLNN LVVCSKCGLG FVHRRKDTVS RGKKYHYRYY
310 320 330 340 350
SCKTYKHTHE LEKCGNKIWR ADKLEELIID RVNNYSFASR NIDKEDELDS
360 370 380 390 400
LNEKLKIEHA KKKRLFDLYI NGSYEVSELD SMMNDIDAQI NYYEAQIEAN
410 420 430 440 450
EELKKNKKIQ ENLADLATVD FNSLEFREKQ LYLKSLINKI YIDGEQVTIE

WL
Length:452
Mass (Da):53,087
Last modified:December 1, 2001 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iA1FB6F8F18541FAF
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AL596172 Genomic DNA Translation: CAC97653.1

Protein sequence database of the Protein Information Resource

More...
PIRi
AE1735

NCBI Reference Sequences

More...
RefSeqi
WP_010991183.1, NC_003212.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
CAC97653; CAC97653; CAC97653

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
lin:int

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL596172 Genomic DNA Translation: CAC97653.1
PIRiAE1735
RefSeqiWP_010991183.1, NC_003212.1

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...
PDBei

Protein Data Bank RCSB

More...
RCSB PDBi

Protein Data Bank Japan

More...
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4KISX-ray3.20A/B/C/D133-452[»]
5U96X-ray1.95A/B/C/D/E/F/G/H350-400[»]
5UAEX-ray2.75A/B/C/D344-405[»]
5UDOX-ray2.54A/B/C/D/E/F/G/H133-452[»]
6DNWX-ray2.85A134-452[»]
SMRiQ928V6
ModBaseiSearch...
PDBe-KBiSearch...

Protein-protein interaction databases

STRINGi272626.lin2426

Genome annotation databases

EnsemblBacteriaiCAC97653; CAC97653; CAC97653
KEGGilin:int

Phylogenomic databases

eggNOGiCOG1961, Bacteria
HOGENOMiCLU_010686_18_3_9
OMAiHDVSIPD
OrthoDBi1791095at2

Family and domain databases

DisProtiDP02495
Gene3Di1.10.10.2600, 1 hit
3.40.50.1390, 1 hit
InterProiView protein in InterPro
IPR038109, DNA_bind_recomb_sf
IPR011109, DNA_bind_recombinase_dom
IPR006118, Recombinase_CS
IPR006119, Resolv_N
IPR036162, Resolvase-like_N_sf
IPR025827, Zn_ribbon_recom_dom
PfamiView protein in Pfam
PF07508, Recombinase, 1 hit
PF00239, Resolvase, 1 hit
PF13408, Zn_ribbon_recom, 1 hit
SMARTiView protein in SMART
SM00857, Resolvase, 1 hit
SUPFAMiSSF53041, SSF53041, 1 hit
PROSITEiView protein in PROSITE
PS51737, RECOMBINASE_DNA_BIND, 1 hit
PS00397, RECOMBINASES_1, 1 hit
PS51736, RECOMBINASES_3, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ928V6_LISIN
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q928V6
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: June 2, 2021
This is version 111 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources
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