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Protein

Collagen alpha-1(XX) chain

Gene

Col20a1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Probable collagen protein.

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

  • calcium ion binding Source: GO_Central
  • mannose binding Source: GO_Central

GO - Biological processi

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes

More...
Reactomei
R-MMU-1650814 Collagen biosynthesis and modifying enzymes
R-MMU-8948216 Collagen chain trimerization

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Collagen alpha-1(XX) chain
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Col20a1
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 2

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...
MGIi
MGI:1920618 Col20a1

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Secreted

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 25Sequence analysisAdd BLAST25
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_000039300526 – 1320Collagen alpha-1(XX) chainAdd BLAST1295

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section specifies the position and type of each covalently attached glycan group (mono-, di-, or polysaccharide).<p><a href='/help/carbohyd' target='_top'>More...</a></p>Glycosylationi433N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi569N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi604N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi771N-linked (GlcNAc...) asparagineSequence analysis1

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q923P0

PRoteomics IDEntifications database

More...
PRIDEi
Q923P0

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q923P0

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
Q923P0

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSMUSG00000016356 Expressed in 169 organ(s), highest expression level in testis

CleanEx database of gene expression profiles

More...
CleanExi
MM_COL20A1

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q923P0 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q923P0 MM

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

ComplexPortal: manually curated resource of macromolecular complexes

More...
ComplexPortali
CPX-3003 Collagen type XX trimer

STRING: functional protein association networks

More...
STRINGi
10090.ENSMUSP00000104484

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...
ProteinModelPortali
Q923P0

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q923P0

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini27 – 118Fibronectin type-III 1PROSITE-ProRule annotationAdd BLAST92
Domaini177 – 352VWFAPROSITE-ProRule annotationAdd BLAST176
Domaini377 – 466Fibronectin type-III 2PROSITE-ProRule annotationAdd BLAST90
Domaini467 – 556Fibronectin type-III 3PROSITE-ProRule annotationAdd BLAST90
Domaini557 – 644Fibronectin type-III 4PROSITE-ProRule annotationAdd BLAST88
Domaini646 – 735Fibronectin type-III 5PROSITE-ProRule annotationAdd BLAST90
Domaini740 – 831Fibronectin type-III 6PROSITE-ProRule annotationAdd BLAST92
Domaini840 – 1035Laminin G-likeAdd BLAST196
Domaini1069 – 1122Collagen-like 1Add BLAST54
Domaini1125 – 1174Collagen-like 2Add BLAST50
Domaini1165 – 1221Collagen-like 3Add BLAST57

Keywords - Domaini

Collagen, Repeat, Signal

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG3544 Eukaryota
ENOG410XNMM LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000163709

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000015812

The HOVERGEN Database of Homologous Vertebrate Genes

More...
HOVERGENi
HBG107744

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q923P0

Identification of Orthologs from Complete Genome Data

More...
OMAi
VVYQIKW

Database of Orthologous Groups

More...
OrthoDBi
EOG091G002N

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q923P0

TreeFam database of animal gene trees

More...
TreeFami
TF329914

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00063 FN3, 5 hits

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.60.40.10, 6 hits
3.40.50.410, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR008160 Collagen
IPR013320 ConA-like_dom_sf
IPR003961 FN3_dom
IPR036116 FN3_sf
IPR013783 Ig-like_fold
IPR001791 Laminin_G
IPR002035 VWF_A
IPR036465 vWFA_dom_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01391 Collagen, 3 hits
PF00041 fn3, 5 hits
PF00092 VWA, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00060 FN3, 6 hits
SM00210 TSPN, 1 hit
SM00327 VWA, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF49265 SSF49265, 4 hits
SSF49899 SSF49899, 1 hit
SSF53300 SSF53300, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50853 FN3, 6 hits
PS50234 VWFA, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (2+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 2 described isoforms and 4 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: Q923P0-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MSLQGSYQHF CLWMFLGTTL ALGQGQVSSR LRLAVLPEDQ LQMKWREAEG
60 70 80 90 100
SGLGFLVQVT PMAGDLEQEL ILTTKTPKAT VGGLNPSKSY TLQIFELTDS
110 120 130 140 150
GPILLARREF VIEDLKSQSL GRGSRRLAGA TLEPTSLPLR GPDSEKTSEP
160 170 180 190 200
SIAFTLSRDL PILDHPQFQC TPPTPADIIF LVDGSWSIGH NHFQQVKDFL
210 220 230 240 250
ASIITQFAIG PDKVQVGLTQ YSGDPQTEWD LNSFQTKEQV LAAVHHLRYK
260 270 280 290 300
GGNTFTGLAL THVLEQNLKP AAGVRPEAAK VLILVTDGKS QDDVRTAARI
310 320 330 340 350
LKDQDIDVFV VGVKNVDEAE LKLLASQPLD ITVHNVLDFP QLDTLAPLLS
360 370 380 390 400
RLICQKIQGR GPVKPAAGTR VLDPLPTPTR LILTHATSSS IHLSWTPALY
410 420 430 440 450
PPLKYLIVWQ PSRGGAPKEV VVEGPVSSME LGNLTSSTEY LVSVLPVYES
460 470 480 490 500
GVGKSLQGRA TTAPLPPPGP LTLAAVTPRT LHVTWPPSAG VTQYLVQYLL
510 520 530 540 550
ATSTGEEQKR EVHVGQPEVL LDGLEPGQDY DVSVQSLRGP EASEVQSIRA
560 570 580 590 600
RTSALGPPRH LTFSDVRYNS TCVSWEAQRP VRLVKVSYIS SDGSHSGQTQ
610 620 630 640 650
VPGNLTSATL GPLSSSTMYT VRVTCFYLGG GSSVLTGHVT TQKAPSPGQL
660 670 680 690 700
SVMELPGDAV KLSWLATALS GVLVYQIKWM PLGEGKAREI SVPGTLGTAT
710 720 730 740 750
LPGLMKHVEY EITILAYYRD GTRSDPVSLR YTPSAASRSP PSSLALSSET
760 770 780 790 800
PNSLQVNWTP PSGHVLHYRL NYTLASGSGP EKSISVPGTR SHAVLRDLMS
810 820 830 840 850
ATKYRVLVSA VYRAGESMAV SATYRTAACP ALHPDSSLSG FDLMVAFGLV
860 870 880 890 900
AKEYASIRGV AMEPSALGVV PTFTLFKDAQ LMRRVSDIYP ATLPPEHTIV
910 920 930 940 950
FLVRLLPETP REAFALWQMM AEDFQPILGV LLDAGRKSLT YFNHDSRAAL
960 970 980 990 1000
QEVTFDLQDA KKIFFGSFHK VHIAVGHSKV RLYVDCRKVA ERPIGDAGSP
1010 1020 1030 1040 1050
PTGGFITLGR LAKARGPRSS SATFQLQMLQ IVCSDTWADK DRCCEIPALR
1060 1070 1080 1090 1100
DGETCPAFPS ACAYSSETPG PPGPQGPPGL PGRNGPPGQQ GHPGPKGEPG
1110 1120 1130 1140 1150
PPGQTGPEGP GGQQGSPGTQ GRAVQGPMGP PGAKGEKGDQ GLSGLQGLSG
1160 1170 1180 1190 1200
QQGIPGKTGL QGPKGMRGLE GPAGLPGPPG PRGFQGLAGA RGTNGERGAP
1210 1220 1230 1240 1250
GAVGPTGLPG SKGERGEKGE PQSLATIFQL VSQACESAIR THVLKLNSFL
1260 1270 1280 1290 1300
HENARPPMPF MAETAKLGRP RSIDPGLHNE ALLPGDWGHI LRPEDQGEPV
1310 1320
TISHTSNPRL QEVQTPESLE
Length:1,320
Mass (Da):140,926
Last modified:March 23, 2010 - v3
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i4E5B1D76D8DF2978
GO
Isoform 2 (identifier: Q923P0-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1242-1297: Missing.

Note: No experimental confirmation available.
Show »
Length:1,264
Mass (Da):134,665
Checksum:iF093651FC8E7E043
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 4 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F6UFI2F6UFI2_MOUSE
Collagen alpha-1(XX) chain
Col20a1
1,288Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A2K6EDL8A0A2K6EDL8_MOUSE
Collagen alpha-1(XX) chain
Col20a1
1,362Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F6ZZM4F6ZZM4_MOUSE
Collagen alpha-1(XX) chain
Col20a1
135Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F6ZXI1F6ZXI1_MOUSE
Collagen alpha-1(XX) chain
Col20a1
79Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAH16112 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated
The sequence BAB24730 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti556 – 558GPP → PRV in AAH30415 (PubMed:15489334).Curated3
Sequence conflicti743S → V in AAH30415 (PubMed:15489334).Curated1
Sequence conflicti1241T → S in AAH16112 (PubMed:15489334).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting. The information stored in this subsection is used to automatically construct alternative protein sequence(s) for display.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0388791242 – 1297Missing in isoform 2. 1 PublicationAdd BLAST56

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AL450341, BX649560 Genomic DNA Translation: CAX15852.1
BX649560, AL450341 Genomic DNA Translation: CAM23230.1
BC016112 mRNA Translation: AAH16112.1 Different initiation.
BC030415 mRNA Translation: AAH30415.1
AK006759 mRNA Translation: BAB24730.1 Different initiation.

The Consensus CDS (CCDS) project

More...
CCDSi
CCDS50844.1 [Q923P0-1]

NCBI Reference Sequences

More...
RefSeqi
NP_082794.1, NM_028518.1 [Q923P0-1]

UniGene gene-oriented nucleotide sequence clusters

More...
UniGenei
Mm.345095

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSMUST00000228434; ENSMUSP00000153871; ENSMUSG00000016356 [Q923P0-1]

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
73368

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
mmu:73368

UCSC genome browser

More...
UCSCi
uc008okp.2 mouse [Q923P0-1]

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL450341, BX649560 Genomic DNA Translation: CAX15852.1
BX649560, AL450341 Genomic DNA Translation: CAM23230.1
BC016112 mRNA Translation: AAH16112.1 Different initiation.
BC030415 mRNA Translation: AAH30415.1
AK006759 mRNA Translation: BAB24730.1 Different initiation.
CCDSiCCDS50844.1 [Q923P0-1]
RefSeqiNP_082794.1, NM_028518.1 [Q923P0-1]
UniGeneiMm.345095

3D structure databases

ProteinModelPortaliQ923P0
SMRiQ923P0
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

ComplexPortaliCPX-3003 Collagen type XX trimer
STRINGi10090.ENSMUSP00000104484

PTM databases

iPTMnetiQ923P0
PhosphoSitePlusiQ923P0

Proteomic databases

PaxDbiQ923P0
PRIDEiQ923P0

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000228434; ENSMUSP00000153871; ENSMUSG00000016356 [Q923P0-1]
GeneIDi73368
KEGGimmu:73368
UCSCiuc008okp.2 mouse [Q923P0-1]

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
57642
MGIiMGI:1920618 Col20a1

Phylogenomic databases

eggNOGiKOG3544 Eukaryota
ENOG410XNMM LUCA
GeneTreeiENSGT00940000163709
HOGENOMiHOG000015812
HOVERGENiHBG107744
InParanoidiQ923P0
OMAiVVYQIKW
OrthoDBiEOG091G002N
PhylomeDBiQ923P0
TreeFamiTF329914

Enzyme and pathway databases

ReactomeiR-MMU-1650814 Collagen biosynthesis and modifying enzymes
R-MMU-8948216 Collagen chain trimerization

Miscellaneous databases

Protein Ontology

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PROi
PR:Q923P0

The Stanford Online Universal Resource for Clones and ESTs

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SOURCEi
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Gene expression databases

BgeeiENSMUSG00000016356 Expressed in 169 organ(s), highest expression level in testis
CleanExiMM_COL20A1
ExpressionAtlasiQ923P0 baseline and differential
GenevisibleiQ923P0 MM

Family and domain databases

CDDicd00063 FN3, 5 hits
Gene3Di2.60.40.10, 6 hits
3.40.50.410, 1 hit
InterProiView protein in InterPro
IPR008160 Collagen
IPR013320 ConA-like_dom_sf
IPR003961 FN3_dom
IPR036116 FN3_sf
IPR013783 Ig-like_fold
IPR001791 Laminin_G
IPR002035 VWF_A
IPR036465 vWFA_dom_sf
PfamiView protein in Pfam
PF01391 Collagen, 3 hits
PF00041 fn3, 5 hits
PF00092 VWA, 1 hit
SMARTiView protein in SMART
SM00060 FN3, 6 hits
SM00210 TSPN, 1 hit
SM00327 VWA, 1 hit
SUPFAMiSSF49265 SSF49265, 4 hits
SSF49899 SSF49899, 1 hit
SSF53300 SSF53300, 1 hit
PROSITEiView protein in PROSITE
PS50853 FN3, 6 hits
PS50234 VWFA, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiCOKA1_MOUSE
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q923P0
Secondary accession number(s): A8WIS2
, Q91WC4, Q923P1, Q923P2, Q9D9L7
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 10, 2002
Last sequence update: March 23, 2010
Last modified: December 5, 2018
This is version 145 of the entry and version 3 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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