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Entry version 146 (31 Jul 2019)
Sequence version 1 (01 Dec 2001)
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Protein
Submitted name:

MCG133388, isoform CRA_f

Gene

Pcdhgc5

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the ‘Description’ field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi37Calcium 1Combined sources1
Metal bindingi37Calcium 2Combined sources1
Metal bindingi38Calcium 1Combined sources1
Metal bindingi91Calcium 1Combined sources1
Metal bindingi93Calcium 1Combined sources1
Metal bindingi93Calcium 2Combined sources1
Metal bindingi125Calcium 2Combined sources1
Metal bindingi126Calcium 2; via carbonyl oxygenCombined sources1
Metal bindingi127Calcium 3Combined sources1
Metal bindingi127Calcium 4Combined sources1
Metal bindingi128Calcium 1Combined sources1
Metal bindingi128Calcium 2Combined sources1
Metal bindingi129Calcium 2Combined sources1
Metal bindingi129Calcium 3; via carbonyl oxygenCombined sources1
Metal bindingi129Calcium 5; via carbonyl oxygenCombined sources1
Metal bindingi144Calcium 6Combined sources1
Metal bindingi144Calcium 7Combined sources1
Metal bindingi159Calcium 3Combined sources1
Metal bindingi159Calcium 4Combined sources1
Metal bindingi159Calcium 5Combined sources1
Metal bindingi161Calcium 2Combined sources1
Metal bindingi161Calcium 3Combined sources1
Metal bindingi161Calcium 4Combined sources1
Metal bindingi161Calcium 5Combined sources1
Metal bindingi165Calcium 3; via carbonyl oxygenCombined sources1
Metal bindingi165Calcium 4; via carbonyl oxygenCombined sources1
Metal bindingi165Calcium 5; via carbonyl oxygenCombined sources1
Metal bindingi201Calcium 6Combined sources1
Metal bindingi203Calcium 6Combined sources1
Metal bindingi203Calcium 7Combined sources1
Metal bindingi216Calcium 4Combined sources1
Metal bindingi216Calcium 5Combined sources1
Metal bindingi234Calcium 7Combined sources1
Metal bindingi235Calcium 7; via carbonyl oxygenCombined sources1
Metal bindingi236Calcium 8Combined sources1
Metal bindingi237Calcium 6Combined sources1
Metal bindingi237Calcium 7Combined sources1
Metal bindingi238Calcium 8; via carbonyl oxygenCombined sources1
Metal bindingi253Calcium 10Combined sources1
Metal bindingi253Calcium 9Combined sources1
Metal bindingi268Calcium 8Combined sources1
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the interaction between a single amino acid and another chemical entity. Priority is given to the annotation of physiological ligands.<p><a href='/help/binding' target='_top'>More...</a></p>Binding sitei268Fucose; via carbonyl oxygenCombined sources1
Metal bindingi270Calcium 7Combined sources1
Metal bindingi270Calcium 8Combined sources1
Metal bindingi274Calcium 8; via carbonyl oxygenCombined sources1
Binding sitei275Fucose; via carbonyl oxygenCombined sources1
Metal bindingi309Calcium 11Combined sources1
Metal bindingi309Calcium 9Combined sources1
Metal bindingi311Calcium 10Combined sources1
Metal bindingi311Calcium 11Combined sources1
Metal bindingi311Calcium 9Combined sources1
Metal bindingi324Calcium 8Combined sources1
Metal bindingi342Calcium 10Combined sources1
Metal bindingi343Calcium 10; via carbonyl oxygenCombined sources1
Metal bindingi343Calcium 11; via carbonyl oxygenCombined sources1
Metal bindingi345Calcium 9Combined sources1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processCell adhesionSAAS annotation
LigandCalciumCombined sourcesSAAS annotation, Metal-bindingCombined sources

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
MCG133388, isoform CRA_fImported
Submitted name:
Pcdhgc5 proteinImported
Submitted name:
Protocadherin gamma C-VImported
Submitted name:
Protocadherin gamma C5Imported
Submitted name:
Protocadherin gamma subfamily C, 5Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Pcdhgc5Imported
ORF Names:mCG_133388Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 18

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...
MGIi
MGI:1935205 Pcdhgc5

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei690 – 711HelicalSequence analysisAdd BLAST22

Keywords - Cellular componenti

Cell membraneSAAS annotation, Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 29Sequence analysisAdd BLAST29
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_501509953530 – 944Sequence analysisAdd BLAST915

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the PTM / Processing":/help/ptm_processing_section section describes the positions of cysteine residues participating in disulfide bonds.<p><a href='/help/disulfid' target='_top'>More...</a></p>Disulfide bondi96 ↔ 102Combined sources
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section specifies the position and type of each covalently attached glycan group (mono-, di-, or polysaccharide).<p><a href='/help/carbohyd' target='_top'>More...</a></p>Glycosylationi223O-linked (Man...) serineCombined sources1
Glycosylationi225O-linked (Man...) serineCombined sources1
Glycosylationi265N-linked (GlcNAc...) asparagineCombined sources1

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSMUSG00000102543 Expressed in 44 organ(s), highest expression level in brain

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
10090.ENSMUSP00000060949

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini54 – 131CAInterPro annotationAdd BLAST78
Domaini155 – 240CAInterPro annotationAdd BLAST86
Domaini264 – 348CAInterPro annotationAdd BLAST85
Domaini372 – 452CAInterPro annotationAdd BLAST81
Domaini476 – 562CAInterPro annotationAdd BLAST87
Domaini592 – 674CAInterPro annotationAdd BLAST83

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni801 – 853DisorderedSequence analysisAdd BLAST53
Regioni914 – 944DisorderedSequence analysisAdd BLAST31

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi814 – 853PolarSequence analysisAdd BLAST40

Keywords - Domaini

RepeatSAAS annotation, SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG3594 Eukaryota
ENOG410XQHI LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000162232

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000220892

KEGG Orthology (KO)

More...
KOi
K16497

Identification of Orthologs from Complete Genome Data

More...
OMAi
VLGPVDF

Database of Orthologous Groups

More...
OrthoDBi
385992at2759

TreeFam database of animal gene trees

More...
TreeFami
TF332299

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR002126 Cadherin-like_dom
IPR015919 Cadherin-like_sf
IPR032455 Cadherin_C
IPR031904 Cadherin_CBD
IPR020894 Cadherin_CS
IPR013164 Cadherin_N

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00028 Cadherin, 5 hits
PF08266 Cadherin_2, 1 hit
PF16492 Cadherin_C_2, 1 hit
PF15974 Cadherin_tail, 1 hit

Protein Motif fingerprint database; a protein domain database

More...
PRINTSi
PR00205 CADHERIN

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00112 CA, 6 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF49313 SSF49313, 6 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00232 CADHERIN_1, 3 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 11 potential isoforms that are computationally mapped.Show allAlign All

Q91XW9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MRPMASPQVA GKWQVLCMLS LCCCGWVSGQ LRYSVVEESE PGTLVGNVAQ
60 70 80 90 100
DLGLKGTDLL SRRLRLGSEE NGRYFSLSLV SGALAVSQKI DRESLCGAST
110 120 130 140 150
SCLLPVQVVT EHPLELTRVE VEILDLNDNS PSFATPDREM RISESAAPGA
160 170 180 190 200
RFPLDSAQDP DVGTNTVSFY TLSPNSHFSL HVKTLKDGKL FPELVLEQQL
210 220 230 240 250
DRETQARHQL VLTAVDGGTP ARSGTSLISV IVLDVNDNAP TFQSSVLRVG
260 270 280 290 300
LPENTPPGTL LLRLNATDPD EGTNGQLDYS FGDHTSETVK NLFGLDPSSG
310 320 330 340 350
AIHVLGPVDF EESNFYEIHA RARDQGQPAM EGHCVIQVDV GDANDNPPEV
360 370 380 390 400
LLASLVNPVL ESTPVGTVVG LFNVRDRDSG RNGEVSLKTS PNLPFQIKPS
410 420 430 440 450
ENHYSLLTSQ PLDREATSHY TIELLASDAG SPPLHTHLTL RLNISDVNDN
460 470 480 490 500
APHFTQQLYT AYIPENRPPG SLLCTVAASD PDEGDNARLT YSIVGSQIQG
510 520 530 540 550
APASSFVYVN PEDGRIFAQR TFDYELLQML QIVVGVRDSG SPRLHANTSL
560 570 580 590 600
HVFVLDQNDN APAVLHPRPG REFSAPQRLP RSAPPGSLVT KVTAVDADAG
610 620 630 640 650
HNAWLSYSLL PQSTAPGLFL VSAHTGEVRT ARALLEDDSD TQQVVVLVRD
660 670 680 690 700
NGDPSLSSTA TVLLVLEDED AEEMPKSSDF LTHPPERSDL TLYLIVALAA
710 720 730 740 750
VSLLSLVTFT FMSAKCLRRH EDGDRGGGHC CRGQDSPSRE FYKQSSPNLQ
760 770 780 790 800
VSSDGTLKYM EVTLRPTDSQ SHCYRTCFSP ASDGSDFTFL RPLSVQQPSA
810 820 830 840 850
LALEPEALRS RSSTLRERSQ QAPPNTDWRF SQAQRPGTSG SQNGDETGTW
860 870 880 890 900
PNNQFDTEML QAMILASASE AADGSSTLGG GAGTMGLSAR YGPQFTLQHV
910 920 930 940
PDYRQNVYIP GSNATLTNAA GKRDGKAPAG GNGNKKKSGK KEKK
Length:944
Mass (Da):101,891
Last modified:December 1, 2001 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iD11F9991EEA0F8EB
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 11 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
Q91XY0Q91XY0_MOUSE
MCG133388, isoform CRA_m
Pcdhga8 mCG_133388
932Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
Q91XZ0Q91XZ0_MOUSE
MCG133388, isoform CRA_t
Pcdhga1 mCG_133388
931Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
Q91XX3Q91XX3_MOUSE
MCG133388, isoform CRA_y
Pcdhgb7 mCG_133388
929Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
Q91XX0Q91XX0_MOUSE
MCG133388, isoform CRA_r
Pcdhgc4 mCG_133388
941Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
Q91XY6Q91XY6_MOUSE
MCG133388, isoform CRA_c
Pcdhga2 mCG_133388
931Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
Q91XX4Q91XX4_MOUSE
MCG133388, isoform CRA_n
Pcdhgb6 mCG_133388
930Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
Q91XY3Q91XY3_MOUSE
MCG133388, isoform CRA_w
Pcdhga5 mCG_133388
932Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A0A6YW27A0A0A6YW27_MOUSE
Protocadherin gamma subfamily A, 1
Pcdhga1
810Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A0A6YXZ9A0A0A6YXZ9_MOUSE
Protocadherin gamma subfamily C, 5
Pcdhgc5
107Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A0A6YVT4A0A0A6YVT4_MOUSE
Protocadherin gamma subfamily C, 5
Pcdhgc5
55Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
There is more potential isoformShow all

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC129315 Genomic DNA No translation available.
BC138677 mRNA Translation: AAI38678.1
BC138678 mRNA Translation: AAI38679.1
AY013813 mRNA Translation: AAK26102.1
AF464163 mRNA Translation: AAM93564.1
CH466528 Genomic DNA Translation: EDL10123.1

NCBI Reference Sequences

More...
RefSeqi
NP_291061.1, NM_033583.3

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSMUST00000055935; ENSMUSP00000060949; ENSMUSG00000102543

Database of genes from NCBI RefSeq genomes

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GeneIDi
93708

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
mmu:93708

UCSC genome browser

More...
UCSCi
uc008erg.1 mouse

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC129315 Genomic DNA No translation available.
BC138677 mRNA Translation: AAI38678.1
BC138678 mRNA Translation: AAI38679.1
AY013813 mRNA Translation: AAK26102.1
AF464163 mRNA Translation: AAM93564.1
CH466528 Genomic DNA Translation: EDL10123.1
RefSeqiNP_291061.1, NM_033583.3

3D structure databases

Select the link destinations:

Protein Data Bank Europe

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PDBei

Protein Data Bank RCSB

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RCSB PDBi

Protein Data Bank Japan

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PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4ZPNX-ray3.30A/B25-345[»]
4ZPOX-ray2.90A30-345[»]
4ZPPX-ray3.00A/B30-345[»]
4ZPQX-ray3.10A/B/C30-345[»]
ModBaseiSearch...
SWISS-MODEL-WorkspaceiSubmit a new modelling project...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000060949

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000055935; ENSMUSP00000060949; ENSMUSG00000102543
GeneIDi93708
KEGGimmu:93708
UCSCiuc008erg.1 mouse

Organism-specific databases

Comparative Toxicogenomics Database

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CTDi
56097
MGIiMGI:1935205 Pcdhgc5

Phylogenomic databases

eggNOGiKOG3594 Eukaryota
ENOG410XQHI LUCA
GeneTreeiENSGT00940000162232
HOGENOMiHOG000220892
KOiK16497
OMAiVLGPVDF
OrthoDBi385992at2759
TreeFamiTF332299

Miscellaneous databases

The Stanford Online Universal Resource for Clones and ESTs

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SOURCEi
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Gene expression databases

BgeeiENSMUSG00000102543 Expressed in 44 organ(s), highest expression level in brain

Family and domain databases

InterProiView protein in InterPro
IPR002126 Cadherin-like_dom
IPR015919 Cadherin-like_sf
IPR032455 Cadherin_C
IPR031904 Cadherin_CBD
IPR020894 Cadherin_CS
IPR013164 Cadherin_N
PfamiView protein in Pfam
PF00028 Cadherin, 5 hits
PF08266 Cadherin_2, 1 hit
PF16492 Cadherin_C_2, 1 hit
PF15974 Cadherin_tail, 1 hit
PRINTSiPR00205 CADHERIN
SMARTiView protein in SMART
SM00112 CA, 6 hits
SUPFAMiSSF49313 SSF49313, 6 hits
PROSITEiView protein in PROSITE
PS00232 CADHERIN_1, 3 hits

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ91XW9_MOUSE
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q91XW9
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: July 31, 2019
This is version 146 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
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