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Protein

DNA-directed RNA polymerase III subunit RPC4

Gene

Polr3d

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. Plays a key role in sensing and limiting infection by intracellular bacteria and DNA viruses. Acts as nuclear and cytosolic DNA sensor involved in innate immune response. Can sense non-self dsDNA that serves as template for transcription into dsRNA. The non-self RNA polymerase III transcripts induce type I interferon and NF- Kappa-B through the RIG-I pathway (By similarity).By similarity

GO - Molecular functioni

  • chromatin binding Source: MGI
  • DNA binding Source: InterPro
  • DNA-directed 5'-3' RNA polymerase activity Source: UniProtKB-KW

GO - Biological processi

Keywordsi

Biological processAntiviral defense, Immunity, Innate immunity, Transcription

Enzyme and pathway databases

ReactomeiR-MMU-76061 RNA Polymerase III Transcription Initiation From Type 1 Promoter
R-MMU-76066 RNA Polymerase III Transcription Initiation From Type 2 Promoter
R-MMU-76071 RNA Polymerase III Transcription Initiation From Type 3 Promoter

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase III subunit RPC4
Short name:
RNA polymerase III subunit C4
Alternative name(s):
DNA-directed RNA polymerase III subunit D
Gene namesi
Name:Polr3d
Synonyms:Bn51t
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 14

Organism-specific databases

MGIiMGI:1914315 Polr3d

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

DNA-directed RNA polymerase, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00000739682 – 398DNA-directed RNA polymerase III subunit RPC4Add BLAST397

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylserineBy similarity1
Modified residuei42PhosphoserineBy similarity1
Cross-linki68Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Cross-linki78Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Modified residuei95Omega-N-methylarginineBy similarity1
Modified residuei97Omega-N-methylarginineBy similarity1
Modified residuei99Omega-N-methylarginineBy similarity1
Cross-linki141Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Cross-linki152Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Cross-linki160Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Cross-linki190Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Cross-linki199Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Cross-linki206Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Cross-linki220Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Cross-linki285Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Cross-linki302Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Cross-linki396Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity

Keywords - PTMi

Acetylation, Isopeptide bond, Methylation, Phosphoprotein, Ubl conjugation

Proteomic databases

EPDiQ91WD1
MaxQBiQ91WD1
PaxDbiQ91WD1
PeptideAtlasiQ91WD1
PRIDEiQ91WD1

PTM databases

iPTMnetiQ91WD1
PhosphoSitePlusiQ91WD1

Expressioni

Gene expression databases

BgeeiENSMUSG00000000776 Expressed in 247 organ(s), highest expression level in ear
CleanExiMM_POLR3D
GenevisibleiQ91WD1 MM

Interactioni

Subunit structurei

Component of the RNA polymerase III (Pol III) complex consisting of 17 subunits. Interacts with POLR3E/RPC5 (By similarity).By similarity

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000000793

Structurei

3D structure databases

ProteinModelPortaliQ91WD1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3122 Eukaryota
ENOG410XPDH LUCA
GeneTreeiENSGT00390000013948
HOGENOMiHOG000008080
HOVERGENiHBG039777
InParanoidiQ91WD1
KOiK03026
OMAiDMTVLGH
OrthoDBiEOG091G13BB

Family and domain databases

InterProiView protein in InterPro
IPR007811 RPC4
PANTHERiPTHR13408 PTHR13408, 1 hit
PfamiView protein in Pfam
PF05132 RNA_pol_Rpc4, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q91WD1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSEGNAAGEP SNPGGPRPLL SGGRGLIGRR PAPPLTPGRL PSIRSRDLTL
60 70 80 90 100
GGVKKKTFTP NIISRKIKEE PKEEVTMKKE KRERDRDRQR EGHGRGRGRP
110 120 130 140 150
EVIQSHSIFE QGPAEMMKKK GNWDKTVDMS DMGPSHIINI KKEKRETDEE
160 170 180 190 200
TKQILRMLEK DDFIDDPGLK NDTRNMPVQL PLAHSGWLFK EESEEPEAKP
210 220 230 240 250
FSAGPKEEDM EVDVPAVKVK EEPRDEEEEA KVKAPPRAAR KTPGLPKDVS
260 270 280 290 300
VAELLRELSL MKDEELLFLQ LPDTLPGQPP TQDIKPVKTE VQGEDGQMVV
310 320 330 340 350
IKQEKDREAR LAENACTLAD LTEGQVGKLL IRKSGKVQLL LGKVTLDVTM
360 370 380 390
GTTCSFLQEL VSVGLGDSRT GEMTVLGHVK HKLVCSPDFE SLLDHKHR
Length:398
Mass (Da):44,357
Last modified:July 27, 2011 - v2
Checksum:iB70179A124C1231B
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti201F → L in AAH16102 (PubMed:15489334).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK013165 mRNA Translation: BAB28687.1
AK156587 mRNA Translation: BAE33768.1
CH466535 Genomic DNA Translation: EDL35903.1
BC016102 mRNA Translation: AAH16102.1
CCDSiCCDS27253.1
RefSeqiNP_001157554.1, NM_001164082.1
NP_080221.3, NM_025945.3
UniGeneiMm.20420

Genome annotation databases

EnsembliENSMUST00000000793; ENSMUSP00000000793; ENSMUSG00000000776
ENSMUST00000180358; ENSMUSP00000137614; ENSMUSG00000000776
GeneIDi67065
KEGGimmu:67065
UCSCiuc007uny.2 mouse

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK013165 mRNA Translation: BAB28687.1
AK156587 mRNA Translation: BAE33768.1
CH466535 Genomic DNA Translation: EDL35903.1
BC016102 mRNA Translation: AAH16102.1
CCDSiCCDS27253.1
RefSeqiNP_001157554.1, NM_001164082.1
NP_080221.3, NM_025945.3
UniGeneiMm.20420

3D structure databases

ProteinModelPortaliQ91WD1
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000000793

PTM databases

iPTMnetiQ91WD1
PhosphoSitePlusiQ91WD1

Proteomic databases

EPDiQ91WD1
MaxQBiQ91WD1
PaxDbiQ91WD1
PeptideAtlasiQ91WD1
PRIDEiQ91WD1

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000000793; ENSMUSP00000000793; ENSMUSG00000000776
ENSMUST00000180358; ENSMUSP00000137614; ENSMUSG00000000776
GeneIDi67065
KEGGimmu:67065
UCSCiuc007uny.2 mouse

Organism-specific databases

CTDi661
MGIiMGI:1914315 Polr3d

Phylogenomic databases

eggNOGiKOG3122 Eukaryota
ENOG410XPDH LUCA
GeneTreeiENSGT00390000013948
HOGENOMiHOG000008080
HOVERGENiHBG039777
InParanoidiQ91WD1
KOiK03026
OMAiDMTVLGH
OrthoDBiEOG091G13BB

Enzyme and pathway databases

ReactomeiR-MMU-76061 RNA Polymerase III Transcription Initiation From Type 1 Promoter
R-MMU-76066 RNA Polymerase III Transcription Initiation From Type 2 Promoter
R-MMU-76071 RNA Polymerase III Transcription Initiation From Type 3 Promoter

Miscellaneous databases

PROiPR:Q91WD1
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000000776 Expressed in 247 organ(s), highest expression level in ear
CleanExiMM_POLR3D
GenevisibleiQ91WD1 MM

Family and domain databases

InterProiView protein in InterPro
IPR007811 RPC4
PANTHERiPTHR13408 PTHR13408, 1 hit
PfamiView protein in Pfam
PF05132 RNA_pol_Rpc4, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiRPC4_MOUSE
AccessioniPrimary (citable) accession number: Q91WD1
Secondary accession number(s): Q3U0T3, Q9CZ02
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 28, 2003
Last sequence update: July 27, 2011
Last modified: November 7, 2018
This is version 120 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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Main funding by: National Institutes of Health

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