Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Protein YIPF1

Gene

Yipf1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • Rab GTPase binding Source: GO_Central

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YIPF1
Alternative name(s):
YIP1 family member 1
Gene namesi
Name:Yipf1
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 4

Organism-specific databases

MGIiMGI:1915532 Yipf1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 119CytoplasmicBy similarityAdd BLAST119
Transmembranei120 – 140HelicalSequence analysisAdd BLAST21
Topological domaini141 – 162LumenalCuratedAdd BLAST22
Transmembranei163 – 183HelicalSequence analysisAdd BLAST21
Topological domaini184 – 200CytoplasmicCuratedAdd BLAST17
Transmembranei201 – 221HelicalSequence analysisAdd BLAST21
Topological domaini222 – 227LumenalCurated6
Transmembranei228 – 248HelicalSequence analysisAdd BLAST21
Topological domaini249 – 256CytoplasmicCurated8
Transmembranei257 – 277HelicalSequence analysisAdd BLAST21
Topological domaini278 – 306LumenalBy similarityAdd BLAST29

Keywords - Cellular componenti

Endosome, Golgi apparatus, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002408691 – 306Protein YIPF1Add BLAST306

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi297N-linked (GlcNAc...) asparagineSequence analysis1

Keywords - PTMi

Glycoprotein

Proteomic databases

MaxQBiQ91VU1
PaxDbiQ91VU1
PRIDEiQ91VU1

PTM databases

iPTMnetiQ91VU1
PhosphoSitePlusiQ91VU1

Expressioni

Gene expression databases

BgeeiENSMUSG00000057375 Expressed in 294 organ(s), highest expression level in primary oocyte
CleanExiMM_YIPF1
ExpressionAtlasiQ91VU1 baseline and differential
GenevisibleiQ91VU1 MM

Interactioni

Subunit structurei

Interacts with YIPF6; this interaction may stabilize YIPF1. May also form a ternary complex with YIPF2 and YIPF6.By similarity

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000075113

Family & Domainsi

Sequence similaritiesi

Belongs to the YIP1 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410IPBM Eukaryota
ENOG410XSEJ LUCA
GeneTreeiENSGT00390000010157
HOGENOMiHOG000231137
HOVERGENiHBG056746
InParanoidiQ91VU1
OMAiLWGFLVW
OrthoDBiEOG091G0JY5
PhylomeDBiQ91VU1
TreeFamiTF313536

Family and domain databases

InterProiView protein in InterPro
IPR006977 Yip1
IPR039765 Yip5/YIPF1/YIPF2
PANTHERiPTHR12822 PTHR12822, 1 hit
PfamiView protein in Pfam
PF04893 Yip1, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 3 potential isoforms that are computationally mapped.Show allAlign All

Q91VU1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAAVDDLQFE EFGDGATLLA ANPDATTINI EDPSVSFGHQ PRPPGSVGRE
60 70 80 90 100
EDEELLGNND SDETELLAGQ KRSSPFWTFE YYQTFFDVDT YQVFDRIKGS
110 120 130 140 150
LLPVPGKNFV RLYIRSNPDL YGPFWICATL VFAIAISGNL SNFLIHLGEK
160 170 180 190 200
TYHYVPEFQK VSIAATVIYA YAWLVPLALW GFLLWRNSKV MSMVSYSFLE
210 220 230 240 250
IVCVYGYSLF IYIPTAVLWI IPQRVVRWVL VMIALGVSGS VLVMTFWPAV
260 270 280 290 300
REDNRRVALA TIVTIVLLHV LLSVGCLAYF FDAPEMDHLP AAITTPNQTV

TAAKSS
Length:306
Mass (Da):34,258
Last modified:December 1, 2001 - v1
Checksum:i680A5C88F750BA3A
GO

Computationally mapped potential isoform sequencesi

There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A2A8S2A2A8S2_MOUSE
Protein YIPF
Yipf1
243Annotation score:
A2A8S3A2A8S3_MOUSE
Protein YIPF
Yipf1
269Annotation score:
D3Z2S7D3Z2S7_MOUSE
Protein YIPF1
Yipf1
35Annotation score:

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti120L → F in BAE34116 (PubMed:16141072).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK081205 mRNA Translation: BAC38163.1
AK157536 mRNA Translation: BAE34116.1
BC009080 mRNA Translation: AAH09080.1
CCDSiCCDS18437.1
RefSeqiNP_663525.1, NM_145550.3
UniGeneiMm.29118

Genome annotation databases

EnsembliENSMUST00000075693; ENSMUSP00000075113; ENSMUSG00000057375
GeneIDi230584
KEGGimmu:230584
UCSCiuc008tzs.2 mouse

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK081205 mRNA Translation: BAC38163.1
AK157536 mRNA Translation: BAE34116.1
BC009080 mRNA Translation: AAH09080.1
CCDSiCCDS18437.1
RefSeqiNP_663525.1, NM_145550.3
UniGeneiMm.29118

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000075113

PTM databases

iPTMnetiQ91VU1
PhosphoSitePlusiQ91VU1

Proteomic databases

MaxQBiQ91VU1
PaxDbiQ91VU1
PRIDEiQ91VU1

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000075693; ENSMUSP00000075113; ENSMUSG00000057375
GeneIDi230584
KEGGimmu:230584
UCSCiuc008tzs.2 mouse

Organism-specific databases

CTDi54432
MGIiMGI:1915532 Yipf1

Phylogenomic databases

eggNOGiENOG410IPBM Eukaryota
ENOG410XSEJ LUCA
GeneTreeiENSGT00390000010157
HOGENOMiHOG000231137
HOVERGENiHBG056746
InParanoidiQ91VU1
OMAiLWGFLVW
OrthoDBiEOG091G0JY5
PhylomeDBiQ91VU1
TreeFamiTF313536

Miscellaneous databases

PROiPR:Q91VU1
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000057375 Expressed in 294 organ(s), highest expression level in primary oocyte
CleanExiMM_YIPF1
ExpressionAtlasiQ91VU1 baseline and differential
GenevisibleiQ91VU1 MM

Family and domain databases

InterProiView protein in InterPro
IPR006977 Yip1
IPR039765 Yip5/YIPF1/YIPF2
PANTHERiPTHR12822 PTHR12822, 1 hit
PfamiView protein in Pfam
PF04893 Yip1, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiYIPF1_MOUSE
AccessioniPrimary (citable) accession number: Q91VU1
Secondary accession number(s): Q3TZU1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: December 1, 2001
Last modified: November 7, 2018
This is version 104 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again