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Entry version 88 (31 Jul 2019)
Sequence version 1 (01 Dec 2001)
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Protein

RNA replication polyprotein

Gene

ORF1

Organism
Citrus leaf blotch virus (isolate Nagami kumquat/France/SRA-153/1984) (CLBV)
Status
Reviewed-Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

RNA replication polyprotein: RNA-directed RNA polymerase involved in viral RNA replication.By similarity
Protease: Thiol protease that cleaves the polyprotein.By similarity

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>This subsection of the ‘Function’ section provides information relevant to cofactors. A cofactor is any non-protein substance required for a protein to be catalytically active. Some cofactors are inorganic, such as the metal atoms zinc, iron, and copper in various oxidation states. Others, such as most vitamins, are organic.<p><a href='/help/cofactor' target='_top'>More...</a></p>Cofactori

Fe2+PROSITE-ProRule annotationNote: Binds 1 Fe2+ ion per subunit.PROSITE-ProRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the ‘Description’ field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi892IronPROSITE-ProRule annotation1
Metal bindingi894IronPROSITE-ProRule annotation1
Metal bindingi946IronPROSITE-ProRule annotation1
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the interaction between a single amino acid and another chemical entity. Priority is given to the annotation of physiological ligands.<p><a href='/help/binding' target='_top'>More...</a></p>Binding sitei9542-oxoglutaratePROSITE-ProRule annotation1
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei982By similarity1
Active sitei1062By similarity1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes a region in the protein which binds nucleotide phosphates. It always involves more than one amino acid and includes all residues involved in nucleotide-binding.<p><a href='/help/np_bind' target='_top'>More...</a></p>Nucleotide bindingi1164 – 1171ATPPROSITE-ProRule annotation8

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDioxygenase, Helicase, Hydrolase, Multifunctional enzyme, Nucleotidyltransferase, Oxidoreductase, Protease, RNA-directed RNA polymerase, Thiol protease, Transferase
Biological processViral RNA replication
LigandATP-binding, Iron, Metal-binding, Nucleotide-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
RNA replication polyproteinBy similarity
Alternative name(s):
ORF1 proteinBy similarity
Including the following 5 domains:
Viral methyltransferaseSequence analysis (EC:2.1.1.-Curated)
Putative Fe(2+) 2-oxoglutarate dioxygenaseSequence analysis (EC:1.14.11.-PROSITE-ProRule annotation)
ProteaseBy similarity (EC:3.4.22.-By similarity)
RNA-directed RNA polymerasePROSITE-ProRule annotation (EC:2.7.7.48PROSITE-ProRule annotation)
HelicaseBy similarity (EC:3.6.4.13Curated)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:ORF1By similarity
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiCitrus leaf blotch virus (isolate Nagami kumquat/France/SRA-153/1984) (CLBV)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri686981 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiVirusesRiboviriaTymoviralesBetaflexiviridaeTrivirinaeCitrivirus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section only exists in viral entries and indicates the host(s) either as a specific organism or taxonomic group of organisms that are susceptible to be infected by a virus.<p><a href='/help/virus_host' target='_top'>More...</a></p>Virus hostiCitrus [TaxID: 2706]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006933 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Genome

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004010881 – 1962RNA replication polyproteinAdd BLAST1962

<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM/processing</a> section describes post-translational modifications (PTMs). This subsection <strong>complements</strong> the information provided at the sequence level or describes modifications for which <strong>position-specific data is not yet available</strong>.<p><a href='/help/post-translational_modification' target='_top'>More...</a></p>Post-translational modificationi

Specific enzymatic cleavages by the viral protease yield mature proteins.By similarity

Proteomic databases

PRoteomics IDEntifications database

More...
PRIDEi
Q91QZ3

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini64 – 261Alphavirus-like MTPROSITE-ProRule annotationAdd BLAST198
Domaini683 – 794OTUPROSITE-ProRule annotationAdd BLAST112
Domaini874 – 963Fe2OG dioxygenasePROSITE-ProRule annotationAdd BLAST90
Domaini978 – 1067Peptidase C23PROSITE-ProRule annotationAdd BLAST90
Domaini1122 – 1297(+)RNA virus helicase ATP-bindingAdd BLAST176
Domaini1298 – 1445(+)RNA virus helicase C-terminalAdd BLAST148
Domaini1739 – 1846RdRp catalyticPROSITE-ProRule annotationAdd BLAST108

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi612 – 615Poly-Glu4
Compositional biasi1590 – 1593Poly-Glu4

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.60.120.590, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR027351 (+)RNA_virus_helicase_core_dom
IPR037151 AlkB-like_sf
IPR002588 Alphavirus-like_MT_dom
IPR003323 OTU_dom
IPR005123 Oxoglu/Fe-dep_dioxygenase
IPR027417 P-loop_NTPase
IPR008041 Peptidase_C23
IPR007094 RNA-dir_pol_PSvirus
IPR001788 Tymovirus_RNA-dep_RNA_pol

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF03171 2OG-FeII_Oxy, 1 hit
PF05379 Peptidase_C23, 1 hit
PF00978 RdRP_2, 1 hit
PF01443 Viral_helicase1, 1 hit
PF01660 Vmethyltransf, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52540 SSF52540, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51743 ALPHAVIRUS_MT, 1 hit
PS51471 FE2OG_OXY, 1 hit
PS50802 OTU, 1 hit
PS51492 PEPTIDASE_C23, 1 hit
PS51657 PSRV_HELICASE, 1 hit
PS50507 RDRP_SSRNA_POS, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q91QZ3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MALMSNKTAI ESILGNFEKK HVDAIYNAAA QTILSHSEFR NKHFAYSLNS
60 70 80 90 100
YQKKIASKVG IELYPNGYLP HSHPLSKIFE NHLLFDVLPG VVNTSRLVMC
110 120 130 140 150
SIKESKVLVF KGIRDKSRRQ VSDLNALNSL NNSHTSFINR LVASKDVSRY
160 170 180 190 200
TEEADAFFQS KKGSPELFSR NFIKSLENKE AVFFHDEVHH WTKAQMFSFL
210 220 230 240 250
KSTKVKRFIF TVVYPPEILK KFANSQNPKV YDFKVDKGRL FFFPDGVKTE
260 270 280 290 300
AYEQKLNMEW LFSASHLRSG DCVWTVTRHK SIYAHHLFEI SIGELVTDSK
310 320 330 340 350
LFFSDYNSID MSKIFLDRFR SYEVFPISIE HLYKVYSYLL CLKKPDLESG
360 370 380 390 400
LAKLRQIIGD DVEIKEFLFF EQFCKRLIER QTSWGLFGHS FFEKLTDMAL
410 420 430 440 450
SSLPNSIARI FPQWKKKNTF EFLFSLGTLV VDVERKVCFE HVLEEWGFEV
460 470 480 490 500
VITDENAYLD PLSIFAINEN FNEDRVDDGY LERIRLPFWN LNDYDLKRKR
510 520 530 540 550
VNAYNILSYR FEEERKIESA QKGPNKMLQI EWYGIKEFKV DPFISNSITE
560 570 580 590 600
FTLLEALLGK RIDPKKYSYS KQACTLSNYL TFLCAEGLDG FNLEEHLERR
610 620 630 640 650
LKAAGHDVSD DEEEELTSAE QAGPIKILAD PLGFMKECLE EIPIETEPSL
660 670 680 690 700
EERGQFSTDY HSEKFEINYN DIFNPHNCMN THGDEIPTPS DGNCFFSAFT
710 720 730 740 750
ETFEVERPDT LRSDFSDWLM EFNGGSYASL AEMIRPNGVF MEAELIYLFC
760 770 780 790 800
VFRGVTLIIH DRTHEKENVY AVHRGFEEGH MVHRGNHFVG IETYNISTLT
810 820 830 840 850
SDPLLGDIPC GFSEEITKFH FRPDHFNCAQ FRGRKAAFIT KVDADYGHNG
860 870 880 890 900
MVYPHNSWVP SLEEIIQICG QGDDFNCALI NFYEANSSLG FHRDNERVYN
910 920 930 940 950
DDPILTVCTF GEGRFTIEFK DQVTSFLMTA GSFFLMPKGF QKKARHSVSN
960 970 980 990 1000
EMSRVSITFR KHVRRLNGSP IAIREENYKN TCLINAFSKA MKRSKQAIIA
1010 1020 1030 1040 1050
KLKTVNSPFW SRYLSEGNGG SIEDCQSACE ALDVTVDLNV NGKCVVLGKG
1060 1070 1080 1090 1100
ALRISMALRN NHFSVINAAQ LMERTFVSHL LEKGNVNVLE GFDAMLSGDV
1110 1120 1130 1140 1150
GAAGVNKIQF AANFEFARIL ANSFLNMTTG ICLGKALDNG EKYFLHILKD
1160 1170 1180 1190 1200
RVKQIGIDVT MVCGFAGSGK SRKLQSWLHS RKKGNFCVVS PRTNLAADWA
1210 1220 1230 1240 1250
FKLELEPNEQ RKVSTFEKFI KTDKSKLDLI VIDELTLFPN GYLDLLVYEL
1260 1270 1280 1290 1300
ADVNRHCQII LLFDPLQARY HNKMDESILT FEHDVDRLIG GQNIEYIYST
1310 1320 1330 1340 1350
HRMSRYFNRF FDVPCFNQAD RTEEQRLWIF DDVYSIPSIC SDRQEPCDVL
1360 1370 1380 1390 1400
LVESDLEKKA FSPIINVMTF GESQGLTFNH VCILLSESSA ASNEFRWMVA
1410 1420 1430 1440 1450
LTRARTRFSL CSTFLGGIEE FKVKRKESLI TSILQGEKIT FNRLNLMLKC
1460 1470 1480 1490 1500
NLIRREKENG CRDEVDREER LEGDPFLKPF IFLGQRVEKD EDEVEEVKIR
1510 1520 1530 1540 1550
EPTCQTHLYI TEPNFGLCYN FDFIREKEQR EYREDMLVTN QFCDSYDKVH
1560 1570 1580 1590 1600
INGKRETPGP LRFKAIYPKH SADDDMTFWM AVRKRLVFRE EEENYQRLSR
1610 1620 1630 1640 1650
AHLVGGLLYT NFKKKMGLEF TFDQGLLEES INAFEKKKLE KSCGTIKSHS
1660 1670 1680 1690 1700
IRSDIDWALN DVFLFMKSQL CTKYEKQFVD AKAGQTLACF QHLILVQFAP
1710 1720 1730 1740 1750
WCRYLETQIR NQLPEEIYIH SNKNFDDLNA WVKKFFQRDI CVESDYEAFD
1760 1770 1780 1790 1800
ASQDEYILSF EIHLMKDAHF PQKIIDAYID LKCKLGCKLG HFSIMRFTGE
1810 1820 1830 1840 1850
FCTFLFNTLA NMAFTMCRYE WRRGQPIAFA GDDMCALNNL AVCHDFDDLF
1860 1870 1880 1890 1900
ELISLKAKVE RTETPMFCGW RLTPYGIVKE PELVYNRFQV AIEEGKVLEC
1910 1920 1930 1940 1950
LENYAIEVSY AYSLSERLYE VLKSERQVQY HQAVVRFIVT HIDKLKTKVR
1960
DLFLEQSSDE DI
Length:1,962
Mass (Da):227,379
Last modified:December 1, 2001 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i138CC30DD43916D5
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AJ318061 Genomic RNA Translation: CAC39422.1

NCBI Reference Sequences

More...
RefSeqi
NP_624333.1, NC_003877.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
944478

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
vg:944478

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ318061 Genomic RNA Translation: CAC39422.1
RefSeqiNP_624333.1, NC_003877.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

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SWISS-MODEL-Workspacei
Submit a new modelling project...

Proteomic databases

PRIDEiQ91QZ3

Genome annotation databases

GeneIDi944478
KEGGivg:944478

Family and domain databases

Gene3Di2.60.120.590, 1 hit
InterProiView protein in InterPro
IPR027351 (+)RNA_virus_helicase_core_dom
IPR037151 AlkB-like_sf
IPR002588 Alphavirus-like_MT_dom
IPR003323 OTU_dom
IPR005123 Oxoglu/Fe-dep_dioxygenase
IPR027417 P-loop_NTPase
IPR008041 Peptidase_C23
IPR007094 RNA-dir_pol_PSvirus
IPR001788 Tymovirus_RNA-dep_RNA_pol
PfamiView protein in Pfam
PF03171 2OG-FeII_Oxy, 1 hit
PF05379 Peptidase_C23, 1 hit
PF00978 RdRP_2, 1 hit
PF01443 Viral_helicase1, 1 hit
PF01660 Vmethyltransf, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
PROSITEiView protein in PROSITE
PS51743 ALPHAVIRUS_MT, 1 hit
PS51471 FE2OG_OXY, 1 hit
PS50802 OTU, 1 hit
PS51492 PEPTIDASE_C23, 1 hit
PS51657 PSRV_HELICASE, 1 hit
PS50507 RDRP_SSRNA_POS, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRDRP_CLBVS
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q91QZ3
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 2, 2010
Last sequence update: December 1, 2001
Last modified: July 31, 2019
This is version 88 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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