Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

60S ribosomal protein L13

Gene

rpl13

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • regulation of cell cycle Source: ZFIN
  • translation Source: GO_Central

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-DRE-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-DRE-1799339 SRP-dependent cotranslational protein targeting to membrane
R-DRE-6791226 Major pathway of rRNA processing in the nucleolus and cytosol
R-DRE-72689 Formation of a pool of free 40S subunits
R-DRE-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-DRE-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-DRE-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L13
Gene namesi
Name:rpl13
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 7

Organism-specific databases

ZFINiZDB-GENE-031007-1 rpl13

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00001929232 – 21160S ribosomal protein L13Add BLAST210

Proteomic databases

PaxDbiQ90Z10
PRIDEiQ90Z10

Expressioni

Gene expression databases

BgeeiENSDARG00000099380
ExpressionAtlasiQ90Z10 baseline

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000047390

Structurei

3D structure databases

SMRiQ90Z10
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3295 Eukaryota
COG4352 LUCA
GeneTreeiENSGT00390000007818
HOGENOMiHOG000170452
HOVERGENiHBG001156
InParanoidiQ90Z10
KOiK02873
OMAiIVVDHRR
OrthoDBiEOG091G0KGO
PhylomeDBiQ90Z10
TreeFamiTF300073

Family and domain databases

HAMAPiMF_00499 Ribosomal_L13e, 1 hit
InterProiView protein in InterPro
IPR001380 Ribosomal_L13e
IPR018256 Ribosomal_L13e_CS
PANTHERiPTHR11722 PTHR11722, 1 hit
PfamiView protein in Pfam
PF01294 Ribosomal_L13e, 1 hit
PROSITEiView protein in PROSITE
PS01104 RIBOSOMAL_L13E, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q90Z10-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPSRNGMIL NPHFHKDWQK RVRTWFNQPA RKIRRRKARQ AKARRIAPRP
60 70 80 90 100
VSGPLRPVVR CPTIRYHTKV RAGRGFTLEE LKAAGINKKV ARTIGISVDS
110 120 130 140 150
RRRNRSTESL QANVQRLKEY RTKLIIFPRK AAKPKKGDST EEELKMATQL
160 170 180 190 200
TGPVMPIKKV HKKEKARVIS EDEKNFKAFA SLRMARANAR LFGIRAKRAK
210
EAAEQDVEKK K
Length:211
Mass (Da):24,365
Last modified:January 23, 2007 - v3
Checksum:iE32706629A5A94E6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF385081 mRNA Translation: AAK63073.1
AY561516 mRNA Translation: AAS66969.1
BC075977 mRNA Translation: AAH75977.1
RefSeqiNP_937786.1, NM_198143.1
XP_005166723.1, XM_005166666.3
UniGeneiDr.75569

Genome annotation databases

EnsembliENSDART00000168460; ENSDARP00000132139; ENSDARG00000099380
ENSDART00000176368; ENSDARP00000144370; ENSDARG00000099380
GeneIDi378961
KEGGidre:378961

Similar proteinsi

Entry informationi

Entry nameiRL13_DANRE
AccessioniPrimary (citable) accession number: Q90Z10
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 11, 2002
Last sequence update: January 23, 2007
Last modified: November 22, 2017
This is version 94 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health