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Protein
Submitted name:

Putative transcriptional repressor (TetR/AcrR family)

Gene

ybiH

Organism
Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi33 – 52H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationSAAS annotation

Enzyme and pathway databases

BioCyciSENT99287:G1FZD-820-MONOMER

Names & Taxonomyi

Protein namesi
Submitted name:
Putative transcriptional repressor (TetR/AcrR family)Imported
Gene namesi
Name:ybiHImported
Ordered Locus Names:STM0819Imported
OrganismiSalmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)Imported
Taxonomic identifieri99287 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeSalmonella
Proteomesi
  • UP000001014 Componenti: Chromosome

PTM / Processingi

Proteomic databases

PaxDbiQ8ZQN9
PRIDEiQ8ZQN9

Interactioni

Protein-protein interaction databases

STRINGi99287.STM0819

Structurei

3D structure databases

ProteinModelPortaliQ8ZQN9
SMRiQ8ZQN9
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ8ZQN9

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini11 – 70HTH tetR-typeInterPro annotationAdd BLAST60

Phylogenomic databases

eggNOGiENOG4107MVR Bacteria
COG1309 LUCA
HOGENOMiHOG000118101
OMAiYFRIGRE
PhylomeDBiQ8ZQN9

Family and domain databases

InterProiView protein in InterPro
IPR023772 DNA-bd_HTH_TetR-type_CS
IPR009057 Homeobox-like_sf
IPR001647 HTH_TetR
IPR036271 Tet_transcr_reg_TetR-rel_C_sf
IPR015292 Tscrpt_reg_YbiH_C
PfamiView protein in Pfam
PF09209 DUF1956, 1 hit
PF00440 TetR_N, 1 hit
PRINTSiPR00455 HTHTETR
SUPFAMiSSF46689 SSF46689, 1 hit
SSF48498 SSF48498, 1 hit
PROSITEiView protein in PROSITE
PS01081 HTH_TETR_1, 1 hit
PS50977 HTH_TETR_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q8ZQN9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MNIPTTTTKG EQAKSQLIAA ALAQFGEYGL HATTRDIAAL AGQNIAAITY
60 70 80 90 100
YFGSKEDLYL ACAQWIADFL GEKFRPHAEK AERLFSQPAP DRDAIRELIL
110 120 130 140 150
LACKNMIMLL TQEDTVNLSK FISREQLSPT SAYQLVHEQV IDPLHTHLTR
160 170 180 190 200
LVAAYTGCDA NDTRMILHTH ALLGEVLAFR LGKETILLRT GWPQFDEEKA
210 220
ELIYQTVTCH IDLILHGLTQ RSLD
Length:224
Mass (Da):25,095
Last modified:March 1, 2002 - v1
Checksum:iF4C71A069D213F45
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006468 Genomic DNA Translation: AAL19756.1
RefSeqiNP_459797.1, NC_003197.2
WP_001025254.1, NC_003197.2

Genome annotation databases

EnsemblBacteriaiAAL19756; AAL19756; STM0819
GeneIDi1252339
KEGGistm:STM0819
PATRICifig|99287.12.peg.853

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006468 Genomic DNA Translation: AAL19756.1
RefSeqiNP_459797.1, NC_003197.2
WP_001025254.1, NC_003197.2

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1T33X-ray2.20A/B1-224[»]
ProteinModelPortaliQ8ZQN9
SMRiQ8ZQN9
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi99287.STM0819

Proteomic databases

PaxDbiQ8ZQN9
PRIDEiQ8ZQN9

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAL19756; AAL19756; STM0819
GeneIDi1252339
KEGGistm:STM0819
PATRICifig|99287.12.peg.853

Phylogenomic databases

eggNOGiENOG4107MVR Bacteria
COG1309 LUCA
HOGENOMiHOG000118101
OMAiYFRIGRE
PhylomeDBiQ8ZQN9

Enzyme and pathway databases

BioCyciSENT99287:G1FZD-820-MONOMER

Miscellaneous databases

EvolutionaryTraceiQ8ZQN9

Family and domain databases

InterProiView protein in InterPro
IPR023772 DNA-bd_HTH_TetR-type_CS
IPR009057 Homeobox-like_sf
IPR001647 HTH_TetR
IPR036271 Tet_transcr_reg_TetR-rel_C_sf
IPR015292 Tscrpt_reg_YbiH_C
PfamiView protein in Pfam
PF09209 DUF1956, 1 hit
PF00440 TetR_N, 1 hit
PRINTSiPR00455 HTHTETR
SUPFAMiSSF46689 SSF46689, 1 hit
SSF48498 SSF48498, 1 hit
PROSITEiView protein in PROSITE
PS01081 HTH_TETR_1, 1 hit
PS50977 HTH_TETR_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiQ8ZQN9_SALTY
AccessioniPrimary (citable) accession number: Q8ZQN9
Entry historyiIntegrated into UniProtKB/TrEMBL: March 1, 2002
Last sequence update: March 1, 2002
Last modified: September 12, 2018
This is version 113 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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