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Entry version 121 (10 Feb 2021)
Sequence version 1 (01 Mar 2002)
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Protein
Submitted name:

Rhs-family protein

Gene

tssI

Organism
Salmonella typhi
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Rhs-family proteinImported
Submitted name:
Type VI secretion system tip protein VgrGImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:tssIImported
Ordered Locus Names:STY0319Imported, t2571Imported
ORF Names:CAJ76_08935Imported, CAJ80_18285Imported, CAJ85_10725Imported, CAL67_22720Imported, CB224_09260Imported, CC884_06315Imported, CC907_10585Imported, CC972_10690Imported, D4Z37_10270Imported, D6Q30_18535Imported, DKA88_11150Imported, DNM71_09685Imported, DNV09_07085Imported, DS261_09940Imported, DUQ91_10100Imported, DUV11_09815Imported, DVG36_08270Imported, EBC38_08590Imported, EID90_06145Imported, ELQ62_05130Imported, EU445_09725Imported, EVI00_09880Imported, F9R11_11750Imported, F9Y21_10425Imported, FI137_05430Imported, G2244_11630Imported, G3982_003783Imported, G3V49_004049Imported, G4I71_004404Imported, G4L28_003738Imported, G4P30_004075Imported, G4Y41_004394Imported, G4Y55_002593Imported, G9264_004355Imported, G9C68_002389Imported, G9X37_004460Imported, GDI29_09900Imported, GND71_002441Imported, ZZ17_05060Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSalmonella typhiImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri90370 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeSalmonella
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002670 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome
  • UP000000541 Componenti: Chromosome

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
220341.16501570

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini484 – 551Phage_base_VInterPro annotationAdd BLAST68

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 26DisorderedSequence analysisAdd BLAST26

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the VgrG protein family.ARBA annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
COG3501, Bacteria

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_004121_7_3_6

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.40.50.230, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR006531, Gp5/Vgr_OB
IPR017847, T6SS_RhsGE_Vgr_subset
IPR006533, T6SS_Vgr_RhsGE
IPR037026, Vgr_OB-fold_dom_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF04717, Phage_base_V, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR01646, vgr_GE, 1 hit
TIGR03361, VI_Rhs_Vgr, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q8Z954-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSFVSTNNKS GMGGLTTTTP PITGESGGVT ADSVAGSVAD AAEAAVEQAA
60 70 80 90 100
GSLFGALPEP SGLVKAAVAA AQAAAAAGMA QDAVSAIVSA VAGGPGAHNV
110 120 130 140 150
TVSGSAVPPG ALLFASLDGG ETLSELFSYV VQLKTPDTLN LGYVSPAANL
160 170 180 190 200
PLKPMVGKDL CVNIELDGGG KRHISGLVTA ARVVGHEGRS VTYELRMEPW
210 220 230 240 250
VKLLTHTSDY KAFQNKTVVD ILDEVLAEYP YPVEKRLVES YPVRTWQVQY
260 270 280 290 300
GETDFDFLQR LMQEWGIYWW FEHSEDSHTL VLADAISAHK ACPDSPLVEW
310 320 330 340 350
HQEGLKLDKE FIHTITANES LRTGQWVLDD FDFTKPRSLL ANTVANPRET
360 370 380 390 400
GHATYEHYEW PGDYFDKSEG EMLTRIRMEA QRSPGSRVLG GGNIRTLMTG
410 420 430 440 450
YTFTLENYPT AEVNQEYLLM QTLLFVQDNA QHSGQDQHFT FSTRFELHPT
460 470 480 490 500
REVFRPQRTV SKPHTKGPQS AIVTGPAGQE IWTDQYGRVK VQFGWDRYGK
510 520 530 540 550
MDENSSCWIR VSYPWAGKGF GMIQIPRIGQ EVLVDFKNGD PDLPIIVGRT
560 570 580 590 600
YNQDTMPPWG LPGMASQSGI FSHSLYGGPT NGNMLRFDDK TGAEEVKFHA
610 620 630 640 650
EKDLNTTVKN NETHTVMVDR TKTIIKNETN SIGEDRNTTV TKNDGLSVKL
660 670 680 690 700
AQTINIGTTY RLDVGDQFTL RCGNAALVLH KDGSIEFCGK QLMLHTSDVM
710 720
QLIGKGIDMN PDGGTAVTAD DIAPLPTSE
Length:729
Mass (Da):79,546
Last modified:March 1, 2002 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iFA80BC50F5A6F579
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AE014613 Genomic DNA Translation: AAO70150.1
AL513382 Genomic DNA Translation: CAD08749.1
AAFJDY010000006 Genomic DNA Translation: EBG5393339.1
AAGUIA010000009 Genomic DNA Translation: EBS0137231.1
AAGULE010000043 Genomic DNA Translation: EBS1100229.1
AAGVVD010000009 Genomic DNA Translation: EBS5364356.1
AAGWES010000010 Genomic DNA Translation: EBS6526271.1
AAHEBT010000009 Genomic DNA Translation: EBV0720558.1
AAHEEH010000008 Genomic DNA Translation: EBV1032479.1
AAHHUX010000011 Genomic DNA Translation: EBW2553091.1
AAHLZU010000009 Genomic DNA Translation: EBX7033806.1
AAHNRO010000008 Genomic DNA Translation: EBY2833690.1
AAHRAJ010000008 Genomic DNA Translation: EBZ4081921.1
AAHSWZ010000006 Genomic DNA Translation: EBZ9854511.1
AAHUNO010000005 Genomic DNA Translation: ECA4923389.1
AAHWPO010000009 Genomic DNA Translation: ECB1384820.1
AAHWWI010000008 Genomic DNA Translation: ECB2193070.1
AAKUKE010000005 Genomic DNA Translation: ECV8215108.1
AALNBT010000010 Genomic DNA Translation: EDB3136212.1
AALNGB010000009 Genomic DNA Translation: EDB3626585.1
AAMFQS010000008 Genomic DNA Translation: EDG8857010.1
AAMFQZ010000011 Genomic DNA Translation: EDG8892902.1
AAMFRD010000039 Genomic DNA Translation: EDG8903322.1
AAMFRJ010000121 Genomic DNA Translation: EDG8935392.1
AAMHNJ010000008 Genomic DNA Translation: EDH3995375.1
AAMICL010000009 Genomic DNA Translation: EDH5800860.1
AAMJUX010000006 Genomic DNA Translation: EDI0957439.1
AAMJVG010000013 Genomic DNA Translation: EDI0994070.1
AAMJWL010000009 Genomic DNA Translation: EDI1139122.1
DAAQQG010000011 Genomic DNA Translation: HAE0417207.1
DAARDQ010000076 Genomic DNA Translation: HAE1998937.1
DAARRK010000046 Genomic DNA Translation: HAE3630059.1
DAASLV010000060 Genomic DNA Translation: HAE6057029.1
DAASSY010000045 Genomic DNA Translation: HAE6909004.1
DAASYX010000038 Genomic DNA Translation: HAE7600553.1
DAATAS010000012 Genomic DNA Translation: HAE7810579.1
DAATOU010000124 Genomic DNA Translation: HAE9017605.1
DAATPQ010000011 Genomic DNA Translation: HAE9579779.1
DAATYW010000011 Genomic DNA Translation: HAF0686801.1
DAAWCE010000171 Genomic DNA Translation: HAF7363738.1
DAAWDS010000069 Genomic DNA Translation: HAF7400752.1

NCBI Reference Sequences

More...
RefSeqi
NP_454896.1, NC_003198.1
WP_000011527.1, NZ_WSUR01000037.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
AAO70150; AAO70150; t2571
CAD08749; CAD08749; CAD08749
CGW10429; CGW10429; ERS248933_03161

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
stt:t2571
sty:STY0319

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|220341.7.peg.317

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014613 Genomic DNA Translation: AAO70150.1
AL513382 Genomic DNA Translation: CAD08749.1
AAFJDY010000006 Genomic DNA Translation: EBG5393339.1
AAGUIA010000009 Genomic DNA Translation: EBS0137231.1
AAGULE010000043 Genomic DNA Translation: EBS1100229.1
AAGVVD010000009 Genomic DNA Translation: EBS5364356.1
AAGWES010000010 Genomic DNA Translation: EBS6526271.1
AAHEBT010000009 Genomic DNA Translation: EBV0720558.1
AAHEEH010000008 Genomic DNA Translation: EBV1032479.1
AAHHUX010000011 Genomic DNA Translation: EBW2553091.1
AAHLZU010000009 Genomic DNA Translation: EBX7033806.1
AAHNRO010000008 Genomic DNA Translation: EBY2833690.1
AAHRAJ010000008 Genomic DNA Translation: EBZ4081921.1
AAHSWZ010000006 Genomic DNA Translation: EBZ9854511.1
AAHUNO010000005 Genomic DNA Translation: ECA4923389.1
AAHWPO010000009 Genomic DNA Translation: ECB1384820.1
AAHWWI010000008 Genomic DNA Translation: ECB2193070.1
AAKUKE010000005 Genomic DNA Translation: ECV8215108.1
AALNBT010000010 Genomic DNA Translation: EDB3136212.1
AALNGB010000009 Genomic DNA Translation: EDB3626585.1
AAMFQS010000008 Genomic DNA Translation: EDG8857010.1
AAMFQZ010000011 Genomic DNA Translation: EDG8892902.1
AAMFRD010000039 Genomic DNA Translation: EDG8903322.1
AAMFRJ010000121 Genomic DNA Translation: EDG8935392.1
AAMHNJ010000008 Genomic DNA Translation: EDH3995375.1
AAMICL010000009 Genomic DNA Translation: EDH5800860.1
AAMJUX010000006 Genomic DNA Translation: EDI0957439.1
AAMJVG010000013 Genomic DNA Translation: EDI0994070.1
AAMJWL010000009 Genomic DNA Translation: EDI1139122.1
DAAQQG010000011 Genomic DNA Translation: HAE0417207.1
DAARDQ010000076 Genomic DNA Translation: HAE1998937.1
DAARRK010000046 Genomic DNA Translation: HAE3630059.1
DAASLV010000060 Genomic DNA Translation: HAE6057029.1
DAASSY010000045 Genomic DNA Translation: HAE6909004.1
DAASYX010000038 Genomic DNA Translation: HAE7600553.1
DAATAS010000012 Genomic DNA Translation: HAE7810579.1
DAATOU010000124 Genomic DNA Translation: HAE9017605.1
DAATPQ010000011 Genomic DNA Translation: HAE9579779.1
DAATYW010000011 Genomic DNA Translation: HAF0686801.1
DAAWCE010000171 Genomic DNA Translation: HAF7363738.1
DAAWDS010000069 Genomic DNA Translation: HAF7400752.1
RefSeqiNP_454896.1, NC_003198.1
WP_000011527.1, NZ_WSUR01000037.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi220341.16501570

Genome annotation databases

EnsemblBacteriaiAAO70150; AAO70150; t2571
CAD08749; CAD08749; CAD08749
CGW10429; CGW10429; ERS248933_03161
KEGGistt:t2571
sty:STY0319
PATRICifig|220341.7.peg.317

Phylogenomic databases

eggNOGiCOG3501, Bacteria
HOGENOMiCLU_004121_7_3_6

Family and domain databases

Gene3Di2.40.50.230, 1 hit
InterProiView protein in InterPro
IPR006531, Gp5/Vgr_OB
IPR017847, T6SS_RhsGE_Vgr_subset
IPR006533, T6SS_Vgr_RhsGE
IPR037026, Vgr_OB-fold_dom_sf
PfamiView protein in Pfam
PF04717, Phage_base_V, 1 hit
TIGRFAMsiTIGR01646, vgr_GE, 1 hit
TIGR03361, VI_Rhs_Vgr, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ8Z954_SALTI
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q8Z954
Secondary accession number(s): A0A0C9FRV8, Q7C803
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: March 1, 2002
Last sequence update: March 1, 2002
Last modified: February 10, 2021
This is version 121 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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