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Protein
Submitted name:

Ribosomal Protein, Small subunit

Gene

rps-20

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • structural constituent of ribosome Source: WormBase

GO - Biological processi

  • cytoplasmic translation Source: GO_Central
  • translation Source: WormBase

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal proteinImported

Enzyme and pathway databases

ReactomeiR-CEL-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-CEL-1799339 SRP-dependent cotranslational protein targeting to membrane
R-CEL-6791226 Major pathway of rRNA processing in the nucleolus and cytosol
R-CEL-72689 Formation of a pool of free 40S subunits
R-CEL-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-CEL-72702 Ribosomal scanning and start codon recognition
R-CEL-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-CEL-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-CEL-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Submitted name:
Ribosomal Protein, Small subunitImported
Gene namesi
Name:rps-20Imported
ORF Names:CELE_Y105E8A.16Imported, Y105E8A.16Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiY105E8A.16 ; CE29835 ; WBGene00004489 ; rps-20

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

EPDiQ8WQA8
PaxDbiQ8WQA8
PeptideAtlasiQ8WQA8

Expressioni

Gene expression databases

BgeeiWBGene00004489

Interactioni

Protein-protein interaction databases

DIPiDIP-25099N
IntActiQ8WQA8, 2 interactors
MINTiQ8WQA8
STRINGi6239.Y105E8A.16.1

Structurei

3D structure databases

ProteinModelPortaliQ8WQA8
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini20 – 114Ribosomal_S10InterPro annotationAdd BLAST95

Phylogenomic databases

eggNOGiKOG0900 Eukaryota
COG0051 LUCA
GeneTreeiENSGT00390000003248
HOGENOMiHOG000270245
InParanoidiQ8WQA8
KOiK02969
OMAiWDRYELK
OrthoDBiEOG091G0VNB
PhylomeDBiQ8WQA8

Family and domain databases

Gene3Di3.30.70.600, 1 hit
HAMAPiMF_00508 Ribosomal_S10, 1 hit
InterProiView protein in InterPro
IPR001848 Ribosomal_S10
IPR027486 Ribosomal_S10_dom
IPR036838 Ribosomal_S10_dom_sf
IPR005729 Ribosomal_S10_euk/arc
PANTHERiPTHR11700 PTHR11700, 1 hit
PfamiView protein in Pfam
PF00338 Ribosomal_S10, 1 hit
PRINTSiPR00971 RIBOSOMALS10
SMARTiView protein in SMART
SM01403 Ribosomal_S10, 1 hit
SUPFAMiSSF54999 SSF54999, 1 hit
TIGRFAMsiTIGR01046 uS10_euk_arch, 1 hit

Sequencei

Sequence statusi: Complete.

Q8WQA8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAVAFKNEKA ITDNSEHRIR LTLTSQNVKP LEKVCAQLID GAKNEHLIVK
60 70 80 90 100
GPIRMPTKVL RITTRKTPCG EGSKTWDRFQ MRIHKRLINL HAPAEVLRQI
110
TSISIEPGVD IEVTRAD
Length:117
Mass (Da):13,234
Last modified:March 1, 2002 - v1
Checksum:iDE351C710B24768B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA Translation: CAD21665.1
RefSeqiNP_740944.1, NM_170948.4
UniGeneiCel.6570

Genome annotation databases

EnsemblMetazoaiY105E8A.16.1; Y105E8A.16.1; WBGene00004489
Y105E8A.16.2; Y105E8A.16.2; WBGene00004489
GeneIDi173309
KEGGicel:CELE_Y105E8A.16
UCSCiY105E8A.16.2 c. elegans

Similar proteinsi

Entry informationi

Entry nameiQ8WQA8_CAEEL
AccessioniPrimary (citable) accession number: Q8WQA8
Entry historyiIntegrated into UniProtKB/TrEMBL: March 1, 2002
Last sequence update: March 1, 2002
Last modified: July 18, 2018
This is version 124 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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