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Entry version 147 (02 Jun 2021)
Sequence version 3 (22 Jul 2008)
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Protein

SWI/SNF complex subunit SWI3D

Gene

SWI3D

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors.

Caution

Was originally incorrectly assigned as CHB4.Curated

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section specifies the position(s) and type(s) of zinc fingers within the protein.<p><a href='/help/zn_fing' target='_top'>More...</a></p>Zinc fingeri304 – 350ZZ-typePROSITE-ProRule annotationAdd BLAST47

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionActivator, Chromatin regulator, Developmental protein, DNA-binding
Biological processTranscription, Transcription regulation
LigandMetal-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
SWI/SNF complex subunit SWI3D
Short name:
AtSWI3D
Alternative name(s):
Transcription regulatory protein SWI3D
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:SWI3D
Synonyms:CHB3
Ordered Locus Names:At4g34430
ORF Names:F10M10.200, T4L20.10
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 4

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT4G34430

The Arabidopsis Information Resource

More...
TAIRi
locus:2116159, AT4G34430

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the 'Pathology and Biotech' section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

Plants are viable but have alterations in leaf, root and flower development, and are early flowering.1 Publication

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001971191 – 985SWI/SNF complex subunit SWI3DAdd BLAST985

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q8VY05

PRoteomics IDEntifications database

More...
PRIDEi
Q8VY05

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
226538 [Q8VY05-1]

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q8VY05

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the 'Expression' section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified 'at protein level'.<br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Ubiquitously expressed.1 Publication

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q8VY05, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q8VY05, AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Interacts with SWI3B, but not with BSH.

Component of a RNA-directed DNA methylation (RdDM) complex that contains at least MORC6, MORC1/CRT1, MORC2, SWI3D and SUVH9 (PubMed:24465213).

Interacts with MORC6 and SUVH9 (PubMed:27171427).

3 Publications

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...
BioGRIDi
14876, 8 interactors

Protein interaction database and analysis system

More...
IntActi
Q8VY05, 5 interactors

STRING: functional protein association networks

More...
STRINGi
3702.AT4G34430.4

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q8VY05

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini145 – 242SWIRMPROSITE-ProRule annotationAdd BLAST98
Domaini362 – 413SANTPROSITE-ProRule annotationAdd BLAST52

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 55DisorderedSequence analysisAdd BLAST55
Regioni428 – 502DisorderedSequence analysisAdd BLAST75
Regioni591 – 814DisorderedSequence analysisAdd BLAST224
Regioni944 – 985DisorderedSequence analysisAdd BLAST42

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili108 – 133Sequence analysisAdd BLAST26
Coiled coili839 – 900Sequence analysisAdd BLAST62

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi591 – 660Basic and acidic residuesSequence analysisAdd BLAST70
Compositional biasi671 – 685Basic and acidic residuesSequence analysisAdd BLAST15
Compositional biasi706 – 720Basic and acidic residuesSequence analysisAdd BLAST15
Compositional biasi721 – 739Polar residuesSequence analysisAdd BLAST19
Compositional biasi742 – 774Basic and acidic residuesSequence analysisAdd BLAST33
Compositional biasi782 – 804Polar residuesSequence analysisAdd BLAST23
Compositional biasi944 – 959Pro residuesSequence analysisAdd BLAST16
Compositional biasi965 – 985Polar residuesSequence analysisAdd BLAST21

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri304 – 350ZZ-typePROSITE-ProRule annotationAdd BLAST47

Keywords - Domaini

Coiled coil, Zinc-finger

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG1279, Eukaryota

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q8VY05

Identification of Orthologs from Complete Genome Data

More...
OMAi
KGNTMET

Database of Orthologous Groups

More...
OrthoDBi
683891at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q8VY05

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00167, SANT, 1 hit
cd02336, ZZ_RSC8, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.10.10.10, 1 hit
3.30.60.90, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR009057, Homeobox-like_sf
IPR041984, Rsc8/Ssr1/Ssr2_ZZ
IPR001005, SANT/Myb
IPR017884, SANT_dom
IPR032451, SMARCC_C
IPR007526, SWIRM
IPR036388, WH-like_DNA-bd_sf
IPR000433, Znf_ZZ
IPR043145, Znf_ZZ_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00249, Myb_DNA-binding, 1 hit
PF04433, SWIRM, 1 hit
PF16495, SWIRM-assoc_1, 1 hit
PF00569, ZZ, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00717, SANT, 1 hit
SM00291, ZnF_ZZ, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF46689, SSF46689, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51293, SANT, 1 hit
PS50934, SWIRM, 1 hit
PS01357, ZF_ZZ_1, 1 hit
PS50135, ZF_ZZ_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (3)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 3 <p>This subsection of the 'Sequence' section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket
Isoform 1 (identifier: Q8VY05-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MEEKRRDSAG TLAFAGSSGD SPASEPMPAP RRRGGGLKRK ANALGGSNFF
60 70 80 90 100
SSAPSKRMLT REKAMLASFS PVHNGPLTRA RQAPSIMPSA ADGVKSEVLN
110 120 130 140 150
VAVGADGEKP KEEEERNKAI REWEALEAKI EADFEAIRSR DSNVHVVPNH
160 170 180 190 200
CGWFSWEKIH PLEERSLPSF FNGKLEGRTS EVYREIRNWI MGKFHSNPNI
210 220 230 240 250
QIELKDLTEL EVGDSEAKQE VMEFLDYWGL INFHPFPPTD TGSTASDHDD
260 270 280 290 300
LGDKESLLNS LYRFQVDEAC PPLVHKPRFT AQATPSGLFP DPMAADELLK
310 320 330 340 350
QEGPAVEYHC NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD
360 370 380 390 400
FILMEPAEAP GVGSGKWTDQ ETLLLLEALE IFKENWNEIA EHVATKTKAQ
410 420 430 440 450
CMLHFLQMPI EDAFLDQIDY KDPISKDTTD LAVSKDDNSV LKDAPEEAEN
460 470 480 490 500
KKRVDEDETM KEVPEPEDGN EEKVSQESSK PGDASEETNE MEAEQKTPKL
510 520 530 540 550
ETAIEERCKD EADENIALKA LTEAFEDVGH SSTPEASFSF ADLGNPVMGL
560 570 580 590 600
AAFLVRLAGS DVATASARAS IKSLHSNSGM LLATRHCYIL EDPPDNKKDP
610 620 630 640 650
TKSKSCSADA EGNDDNSHKD DQPEEKSKKA EEVSLNSDDR EMPDTDTGKE
660 670 680 690 700
TQDSVSEEKQ PGSRTENSTT KLDAVQEKRS SKPVTTDNSE KPVDIICPSQ
710 720 730 740 750
DKCSGKELQE PLKDGNKLSS ENKDASQSTV SQSAADASQP EASRDVEMKD
760 770 780 790 800
TLQSEKDPED VVKTVGEKVQ LAKEEGANDV LSTPDKSVSQ QPIGSASAPE
810 820 830 840 850
NGTAGGNPNI EGKKEKDICE GTKDKYNIEK LKRAAISAIS AAAVKAKNLA
860 870 880 890 900
KQEEDQIRQL SGSLIEKQLH KLEAKLSIFN EAESLTMRVR EQLERSRQRL
910 920 930 940 950
YHERAQIIAA RLGVPPSMSS KASLPTNRIA ANFANVAQRP PMGMAFPRPP
960 970 980
MPRPPGFPVP GSFVAATTMT GSSDPSPGSD NVSSV
Length:985
Mass (Da):107,797
Last modified:July 22, 2008 - v3
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iFDF941F23E23337A
GO
Isoform 2 (identifier: Q8VY05-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     605-606: Missing.

Show »
Length:983
Mass (Da):107,606
Checksum:i3A1BCB1761E980DF
GO
Isoform 3 (identifier: Q8VY05-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     867-867: K → KQ

Show »
Length:986
Mass (Da):107,925
Checksum:iB3942C25B400EFAC
GO

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence CAA18822 differs from that shown. Reason: Erroneous initiation. Truncated N-terminus.Curated
The sequence CAB36720 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence CAB80160 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti591E → G in BAC41956 (PubMed:11910074).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_012493605 – 606Missing in isoform 2. 1 Publication2
Alternative sequenceiVSP_034846867K → KQ in isoform 3. Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AL023094 Genomic DNA Translation: CAA18822.1 Different initiation.
AL035521 Genomic DNA Translation: CAB36720.1 Sequence problems.
AL161585 Genomic DNA Translation: CAB80160.1 Sequence problems.
CP002687 Genomic DNA Translation: AEE86373.1
CP002687 Genomic DNA Translation: AEE86374.1
CP002687 Genomic DNA Translation: AEE86375.1
CP002687 Genomic DNA Translation: AEE86376.1
AK117284 mRNA Translation: BAC41956.1
AY074306 mRNA Translation: AAL67003.1
AY096454 mRNA Translation: AAM20094.1

Protein sequence database of the Protein Information Resource

More...
PIRi
T04789
T05263

NCBI Reference Sequences

More...
RefSeqi
NP_195169.3, NM_119608.3 [Q8VY05-2]
NP_849563.1, NM_179232.1 [Q8VY05-1]
NP_849564.1, NM_179233.2 [Q8VY05-1]
NP_974682.1, NM_202953.1 [Q8VY05-3]

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT4G34430.1; AT4G34430.1; AT4G34430 [Q8VY05-1]
AT4G34430.2; AT4G34430.2; AT4G34430 [Q8VY05-1]
AT4G34430.3; AT4G34430.3; AT4G34430 [Q8VY05-2]
AT4G34430.4; AT4G34430.4; AT4G34430 [Q8VY05-3]

Database of genes from NCBI RefSeq genomes

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GeneIDi
829594

Gramene; a comparative resource for plants

More...
Gramenei
AT4G34430.1; AT4G34430.1; AT4G34430 [Q8VY05-1]
AT4G34430.2; AT4G34430.2; AT4G34430 [Q8VY05-1]
AT4G34430.3; AT4G34430.3; AT4G34430 [Q8VY05-2]
AT4G34430.4; AT4G34430.4; AT4G34430 [Q8VY05-3]

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT4G34430

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL023094 Genomic DNA Translation: CAA18822.1 Different initiation.
AL035521 Genomic DNA Translation: CAB36720.1 Sequence problems.
AL161585 Genomic DNA Translation: CAB80160.1 Sequence problems.
CP002687 Genomic DNA Translation: AEE86373.1
CP002687 Genomic DNA Translation: AEE86374.1
CP002687 Genomic DNA Translation: AEE86375.1
CP002687 Genomic DNA Translation: AEE86376.1
AK117284 mRNA Translation: BAC41956.1
AY074306 mRNA Translation: AAL67003.1
AY096454 mRNA Translation: AAM20094.1
PIRiT04789
T05263
RefSeqiNP_195169.3, NM_119608.3 [Q8VY05-2]
NP_849563.1, NM_179232.1 [Q8VY05-1]
NP_849564.1, NM_179233.2 [Q8VY05-1]
NP_974682.1, NM_202953.1 [Q8VY05-3]

3D structure databases

SMRiQ8VY05
ModBaseiSearch...

Protein-protein interaction databases

BioGRIDi14876, 8 interactors
IntActiQ8VY05, 5 interactors
STRINGi3702.AT4G34430.4

PTM databases

iPTMnetiQ8VY05

Proteomic databases

PaxDbiQ8VY05
PRIDEiQ8VY05
ProteomicsDBi226538 [Q8VY05-1]

Genome annotation databases

EnsemblPlantsiAT4G34430.1; AT4G34430.1; AT4G34430 [Q8VY05-1]
AT4G34430.2; AT4G34430.2; AT4G34430 [Q8VY05-1]
AT4G34430.3; AT4G34430.3; AT4G34430 [Q8VY05-2]
AT4G34430.4; AT4G34430.4; AT4G34430 [Q8VY05-3]
GeneIDi829594
GrameneiAT4G34430.1; AT4G34430.1; AT4G34430 [Q8VY05-1]
AT4G34430.2; AT4G34430.2; AT4G34430 [Q8VY05-1]
AT4G34430.3; AT4G34430.3; AT4G34430 [Q8VY05-2]
AT4G34430.4; AT4G34430.4; AT4G34430 [Q8VY05-3]
KEGGiath:AT4G34430

Organism-specific databases

AraportiAT4G34430
TAIRilocus:2116159, AT4G34430

Phylogenomic databases

eggNOGiKOG1279, Eukaryota
InParanoidiQ8VY05
OMAiKGNTMET
OrthoDBi683891at2759
PhylomeDBiQ8VY05

Miscellaneous databases

Protein Ontology

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PROi
PR:Q8VY05

Gene expression databases

ExpressionAtlasiQ8VY05, baseline and differential
GenevisibleiQ8VY05, AT

Family and domain databases

CDDicd00167, SANT, 1 hit
cd02336, ZZ_RSC8, 1 hit
Gene3Di1.10.10.10, 1 hit
3.30.60.90, 1 hit
InterProiView protein in InterPro
IPR009057, Homeobox-like_sf
IPR041984, Rsc8/Ssr1/Ssr2_ZZ
IPR001005, SANT/Myb
IPR017884, SANT_dom
IPR032451, SMARCC_C
IPR007526, SWIRM
IPR036388, WH-like_DNA-bd_sf
IPR000433, Znf_ZZ
IPR043145, Znf_ZZ_sf
PfamiView protein in Pfam
PF00249, Myb_DNA-binding, 1 hit
PF04433, SWIRM, 1 hit
PF16495, SWIRM-assoc_1, 1 hit
PF00569, ZZ, 1 hit
SMARTiView protein in SMART
SM00717, SANT, 1 hit
SM00291, ZnF_ZZ, 1 hit
SUPFAMiSSF46689, SSF46689, 2 hits
PROSITEiView protein in PROSITE
PS51293, SANT, 1 hit
PS50934, SWIRM, 1 hit
PS01357, ZF_ZZ_1, 1 hit
PS50135, ZF_ZZ_2, 1 hit

MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiSWI3D_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q8VY05
Secondary accession number(s): O65671
, Q3E9R6, Q8GZ04, Q9SZ08
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 4, 2005
Last sequence update: July 22, 2008
Last modified: June 2, 2021
This is version 147 of the entry and version 3 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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