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Protein

Arabinosyltransferase XEG113

Gene

XEG113

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Plays a role in the arabinosylation of cell wall components. Involved in the arabinosylation of extensin proteins in root hair cells (PubMed:19667208, PubMed:21680836). Extensins are structural glycoproteins present in cell walls and its arabinosylation is important for cell elongation, root hair cell development, lateral root development and root hair tip growth (PubMed:19667208, PubMed:21680836, PubMed:24619997, PubMed:25944827).4 Publications

GO - Molecular functioni

  • arabinosyltransferase activity Source: TAIR

GO - Biological processi

Keywordsi

Molecular functionGlycosyltransferase, Transferase
Biological processCell wall biogenesis/degradation

Protein family/group databases

CAZyiGT77 Glycosyltransferase Family 77

Names & Taxonomyi

Protein namesi
Recommended name:
Arabinosyltransferase XEG113Curated (EC:2.4.2.-Curated)
Alternative name(s):
Protein LATERAL ROOT DEVELOPMENT 51 Publication
Xyloglucanase 1131 Publication
Gene namesi
Name:XEG1131 Publication
Synonyms:LRD51 Publication
Ordered Locus Names:At2g35610Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G35610
TAIRilocus:2058769 AT2G35610

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 17CytoplasmicCuratedAdd BLAST17
Transmembranei18 – 38Helical; Signal-anchor for type II membrane proteinSequence analysisAdd BLAST21
Topological domaini39 – 644LumenalCuratedAdd BLAST606

Keywords - Cellular componenti

Golgi apparatus, Membrane

Pathology & Biotechi

Disruption phenotypei

Increased elongation of hypocotyls (PubMed:19667208). Reduced root hair length (PubMed:21680836). Reduced content of arabinosylated extensins in cell walls (PubMed:19667208, PubMed:21680836). Increased lateral root formation (PubMed:24619997).3 Publications

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004345401 – 644Arabinosyltransferase XEG113Add BLAST644

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi46N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi70N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi446N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi542N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDbiQ8VXZ5

Expressioni

Gene expression databases

ExpressionAtlasiQ8VXZ5 baseline and differential
GenevisibleiQ8VXZ5 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G35610.1

Structurei

3D structure databases

ProteinModelPortaliQ8VXZ5
SMRiQ8VXZ5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi226 – 228DXD motifCurated3

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi76 – 89Pro-richPROSITE-ProRule annotationAdd BLAST14

Domaini

The conserved DXD motif is involved in enzyme activity.By similarity

Sequence similaritiesi

Belongs to the glycosyltransferase 77 family.Curated

Keywords - Domaini

Signal-anchor, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410IGI8 Eukaryota
ENOG410ZPDM LUCA
HOGENOMiHOG000012706
InParanoidiQ8VXZ5
KOiK20784
OMAiSHMSTID
OrthoDBiEOG093605UU
PhylomeDBiQ8VXZ5

Family and domain databases

InterProiView protein in InterPro
IPR005069 Nucl-diP-sugar_transferase
PfamiView protein in Pfam
PF03407 Nucleotid_trans, 1 hit

Sequencei

Sequence statusi: Complete.

Q8VXZ5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MVEGWRNGFR DATNSKPLFV TIYATVIIGV LVSSFYVFSA IYSPTNGSSS
60 70 80 90 100
FLSFPPLSTS GRIHSLPQEN ATLELPVAPP PPPQALPPPV LEEAQGNSLG
110 120 130 140 150
KIWVSPPRDK KMPPLETFKL TKELFGERVK DNVIIVTFGN YAFMDFILTW
160 170 180 190 200
VKHLTDLDLS NILVGAMDTK LLEALYWKGV PVFDMGSHMS TVDVGWGSPT
210 220 230 240 250
FHKMGREKVI LIDSVLPFGY ELLMCDTDMV WLKNPMPYLA RFPDADVLTS
260 270 280 290 300
SDQVVPTVID DSLDIWQQVG AAYNIGIFHW RPTESAKKLA KEWKEILLAD
310 320 330 340 350
DKVWDQNGFN EIVRRQLGPS VEGDSGLFYA YDGNLKVGIL PASIFCSGHT
360 370 380 390 400
YFVQAMYQQL RLEPYAVHTT FQYAGTEGKR HRLREGMVFY DPPEYYDSPG
410 420 430 440 450
GFIAFKPSIP KSLLLDGKHT IESHFILVNH QMKQIRSALA IASLLNRTLV
460 470 480 490 500
MPPIWCRLDR LWFGHPGTLQ GSMTRQPFIC PLDHVFEVNI MLKELPEEEF
510 520 530 540 550
GPGIGIREYS FLDNPLLPKQ VKESWLDVQL CQEGKEGCEA SNNTSPSRVL
560 570 580 590 600
KFPKRSNEDT FKAIFSSFDD VKVIKFSSIE DAFIGFSDKE REERFRRRVK
610 620 630 640
RYVGIWCCEE NKTPGHIYYD MYWDEKPGWK PVPPQTPEED HPPL
Length:644
Mass (Da):73,213
Last modified:March 1, 2002 - v1
Checksum:iD436221B732DF780
GO

Sequence cautioni

The sequence AAD15452 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti167M → V in BAH19600 (PubMed:19423640).Curated1
Sequence conflicti620D → E in BAH19600 (PubMed:19423640).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KJ138873 mRNA Translation: AHL38813.1
AC006068 Genomic DNA Translation: AAD15452.2 Sequence problems.
CP002685 Genomic DNA Translation: AEC09128.1
AY074327 mRNA Translation: AAL67023.1
AK316893 mRNA Translation: BAH19600.1
PIRiG84770
RefSeqiNP_850250.1, NM_179919.2
UniGeneiAt.75202

Genome annotation databases

EnsemblPlantsiAT2G35610.1; AT2G35610.1; AT2G35610
GeneIDi818128
GrameneiAT2G35610.1; AT2G35610.1; AT2G35610
KEGGiath:AT2G35610

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KJ138873 mRNA Translation: AHL38813.1
AC006068 Genomic DNA Translation: AAD15452.2 Sequence problems.
CP002685 Genomic DNA Translation: AEC09128.1
AY074327 mRNA Translation: AAL67023.1
AK316893 mRNA Translation: BAH19600.1
PIRiG84770
RefSeqiNP_850250.1, NM_179919.2
UniGeneiAt.75202

3D structure databases

ProteinModelPortaliQ8VXZ5
SMRiQ8VXZ5
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G35610.1

Protein family/group databases

CAZyiGT77 Glycosyltransferase Family 77

Proteomic databases

PaxDbiQ8VXZ5

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G35610.1; AT2G35610.1; AT2G35610
GeneIDi818128
GrameneiAT2G35610.1; AT2G35610.1; AT2G35610
KEGGiath:AT2G35610

Organism-specific databases

AraportiAT2G35610
TAIRilocus:2058769 AT2G35610

Phylogenomic databases

eggNOGiENOG410IGI8 Eukaryota
ENOG410ZPDM LUCA
HOGENOMiHOG000012706
InParanoidiQ8VXZ5
KOiK20784
OMAiSHMSTID
OrthoDBiEOG093605UU
PhylomeDBiQ8VXZ5

Miscellaneous databases

PROiPR:Q8VXZ5

Gene expression databases

ExpressionAtlasiQ8VXZ5 baseline and differential
GenevisibleiQ8VXZ5 AT

Family and domain databases

InterProiView protein in InterPro
IPR005069 Nucl-diP-sugar_transferase
PfamiView protein in Pfam
PF03407 Nucleotid_trans, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiXG113_ARATH
AccessioniPrimary (citable) accession number: Q8VXZ5
Secondary accession number(s): B9DFT3, Q9ZQN4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 14, 2015
Last sequence update: March 1, 2002
Last modified: October 10, 2018
This is version 106 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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