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Protein

Putative GPI-anchored protein pfl2

Gene

pfl2

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

May be involved in agglutination during conjugation or other aspects of colony formation (By similarity). Induces flocculation when overexpressed (PubMed:23236291).By similarity1 Publication

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

  • cell-cell adhesion involved in flocculation Source: PomBase

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Putative GPI-anchored protein pfl2Curated
Alternative name(s):
Pombe flocculin 21 Publication
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:pfl21 Publication
ORF Names:SPAPB15E9.01cImported, SPAPB18E9.06c
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri284812 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002485 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome I

Organism-specific databases

Eukaryotic Pathogen Database Resources

More...
EuPathDBi
FungiDB:SPAPB15E9.01c

Schizosaccharomyces pombe database

More...
PomBasei
SPAPB15E9.01c pfl2

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Cell membrane, Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 23Sequence analysisAdd BLAST23
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_000001421224 – 1011Putative GPI-anchored protein pfl2Add BLAST988
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section describes a propeptide, which is a part of a protein that is cleaved during maturation or activation. Once cleaved, a propeptide generally has no independent biological function.<p><a href='/help/propep' target='_top'>More...</a></p>PropeptideiPRO_00004158881012 – 1036Removed in mature formSequence analysisAdd BLAST25

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section specifies the position and type of each covalently attached glycan group (mono-, di-, or polysaccharide).<p><a href='/help/carbohyd' target='_top'>More...</a></p>Glycosylationi66N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi97N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi165N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi201N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi233N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi259N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi277N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi296N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi312N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi331N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi347N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi363N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi379N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi395N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi410N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi429N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi445N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi461N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi477N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi493N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi509N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi524N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi543N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi559N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi573N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi611N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi626N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi642N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi657N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi673N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi688N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi704N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi719N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi735N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi918N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi924N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi930N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi933N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi939N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi947N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
Glycosylationi977N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation1
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section specifies the position(s) and the type of covalently attached lipid group(s).<p><a href='/help/lipid' target='_top'>More...</a></p>Lipidationi1011GPI-anchor amidated serineSequence analysis1

Keywords - PTMi

Glycoprotein, GPI-anchor, Lipoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q8TFG9

PRoteomics IDEntifications database

More...
PRIDEi
Q8TFG9

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...
BioGridi
858075, 1 interactor

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi68 – 1020Ser/Thr-richSequence analysisAdd BLAST953

Keywords - Domaini

Signal

Phylogenomic databases

Identification of Orthologs from Complete Genome Data

More...
OMAi
ARNVKYD

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

Q8TFG9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKFFTASTLF LLAAQSLNSG VSASLSDPAN TPTILADDIV HGYTPATYLS
60 70 80 90 100
SVPTLLKRAT TSYNYNTSSA SSSSLTSSSA ASSSLTSSSS LASSSTNSTT
110 120 130 140 150
SASPTSSSLT SSSATSSSLA SSSTTSSSLA SSSITSSSLA SSSITSSSLA
160 170 180 190 200
SSSTTSSSLA SSSTNSTTSA TPTSSATSSS LSSTAASNSA TSSSLASSSL
210 220 230 240 250
NSTTSATATS SSLSSTAASN SATSSSLASS SLNSTTSATA TSSSISSTVS
260 270 280 290 300
SSTPLTSSNS TTAATSASAT SSSAQYNTSS LLPSSTPSST PLSSANSTTA
310 320 330 340 350
TSASSTPLTS VNSTTTTSAS STPLSSVSSA NSTTATSTSS TPLSSVNSTT
360 370 380 390 400
ATSASSTPLT SVNSTTATSA SSTPLTSVNS TSATSASSTP LTSANSTTST
410 420 430 440 450
SVSSTAPSYN TSSVLPTSSV SSTPLSSANS TTATSASSTP LSSVNSTTAT
460 470 480 490 500
SASSTPLSSV NSTTATSASS TPLTSVNSTT ATSASSTPLT SVNSTSATSA
510 520 530 540 550
SSTPLTSANS TTSTSVSSTA PSYNTSSVLP TSSVSSTPLS SANSTTATSA
560 570 580 590 600
SSTPLTSVNS TTATSASSTP FGNSTITSSA SGSTGEFTNT NSGNGDVSGS
610 620 630 640 650
VTTPTSTPLS NSTVAPTSTF TSSGFNTTSG LPTSSASTPL SNSTVAPTST
660 670 680 690 700
FTSSGFNTTS GLPTSSASTP SSNSSIVPTS TFTSSGFNTT SGLPTSSAST
710 720 730 740 750
PLSNSTVAPT STFTSSGFNT TSGLPTSSVS TPLSNSSAYP SSGSSTFSRL
760 770 780 790 800
SSTLTSSIIP TETFGSTSGS ATGTRPTGSS SQGSVVPTTS TGSSVTSTGT
810 820 830 840 850
GTTTGVTEVT ETSTFETTEI ITSTIEPTTA SGTGGGNPTA APTNEPTVTT
860 870 880 890 900
GTETTEGTAT YTEPTTFTST FSFTTTIIGG TTTIIPVNPG NPSSSVSAPP
910 920 930 940 950
TTSFTPGPGG SGYPSYSNTT QGMNTTSIWN SSNSTIVSNV TATITGNVTI
960 970 980 990 1000
TTGDLTTIDP TTFTSTYLSS GFQTVSNTTA TSGSDDDVKT ASTSSSTSYT
1010 1020 1030
SSSSSSSSTT SAASSKASVS MGLNGLMIAA VILLVA
Length:1,036
Mass (Da):99,496
Last modified:February 22, 2012 - v3
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iC2C2A81D4AB71CE5
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti858 – 859TA → SV in BAA13880 (PubMed:9501991).Curated2
Sequence conflicti888N → Y in BAA13880 (PubMed:9501991).Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CU329670 Genomic DNA Translation: CAD27472.2
D89219 mRNA Translation: BAA13880.1

Protein sequence database of the Protein Information Resource

More...
PIRi
T43040

NCBI Reference Sequences

More...
RefSeqi
XP_001713096.1, XM_001713044.2

Genome annotation databases

Ensembl fungal genome annotation project

More...
EnsemblFungii
SPAPB15E9.01c.1; SPAPB15E9.01c.1:pep; SPAPB15E9.01c

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA Translation: CAD27472.2
D89219 mRNA Translation: BAA13880.1
PIRiT43040
RefSeqiXP_001713096.1, XM_001713044.2

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

Protein-protein interaction databases

BioGridi858075, 1 interactor

Proteomic databases

PaxDbiQ8TFG9
PRIDEiQ8TFG9

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPAPB15E9.01c.1; SPAPB15E9.01c.1:pep; SPAPB15E9.01c

Organism-specific databases

EuPathDBiFungiDB:SPAPB15E9.01c
PomBaseiSPAPB15E9.01c pfl2

Phylogenomic databases

OMAiARNVKYD

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q8TFG9

Family and domain databases

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPFL2_SCHPO
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q8TFG9
Secondary accession number(s): P78869, Q8TFG2
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 29, 2004
Last sequence update: February 22, 2012
Last modified: December 5, 2018
This is version 79 of the entry and version 3 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
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