GRIN3A

Functionⁱ

NMDA receptor subtype of glutamate-gated ion channels with reduced single-channel conductance, low calcium permeability and low voltage-dependent sensitivity to magnesium. Mediated by glycine. May play a role in the development of dendritic spines. May play a role in PPP2CB-NMDAR mediated signaling mechanism (By similarity).By similarity

GO - Molecular functionⁱ

calcium channel activity Source: Ensembl
glycine binding
Source: UniProtKB
Inferred from direct assayⁱ
- 17320117
identical protein binding
Source: UniProtKB
Inferred from physical interactionⁱ
- 17997397
NMDA glutamate receptor activity
Source: UniProtKB
Inferred from direct assayⁱ
- 17502428
protein phosphatase 2A binding Source: UniProtKB

View the complete GO annotation on QuickGO ...

GO - Biological processⁱ

calcium ion transport Source: UniProtKB
dendrite development Source: Ensembl
prepulse inhibition Source: Ensembl
response to ethanol
Source: UniProtKB
Inferred from direct assayⁱ
- 17502428
- 18445116

View the complete GO annotation on QuickGO ...

Keywordsⁱ

Molecular function	Ion channel, Ligand-gated ion channel, Receptor
Biological process	Ion transport, Transport
Ligand	Calcium, Magnesium

Names & Taxonomyⁱ

Protein namesⁱ	Recommended name: Glutamate receptor ionotropic, NMDA 3A Short name: GluN3A Alternative name(s): N-methyl-D-aspartate receptor subtype 3A Short name: NMDAR3A Short name: NR3A NMDAR-L
Gene namesⁱ	Name:GRIN3A Synonyms:KIAA1973
Organismⁱ	Homo sapiens (Human)
Taxonomic identifierⁱ	9606 [NCBI]
Taxonomic lineageⁱ	cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Dipnotetrapodomorpha › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Boreoeutheria › Euarchontoglires › Primates › Haplorrhini › Simiiformes › Catarrhini › Hominoidea › Hominidae › Homininae › Homo
Proteomesⁱ	UP000005640 Componentⁱ: Chromosome 9

Organism-specific databases

EuPathDBⁱ	HostDB:ENSG00000198785.4
Human Gene Nomenclature Database More...HGNCⁱ	HGNC:16767 GRIN3A
MIMⁱ	606650 gene
neXtProtⁱ	NX_Q8TCU5

Topology

Feature key	Position(s)	DescriptionActions	Length
Topological domainⁱ	24 – 674	ExtracellularSequence analysisAdd BLAST	651
Transmembraneⁱ	675 – 695	HelicalSequence analysisAdd BLAST	21
Topological domainⁱ	696 – 748	CytoplasmicSequence analysisAdd BLAST	53
Transmembraneⁱ	749 – 769	HelicalSequence analysisAdd BLAST	21
Topological domainⁱ	770 – 930	ExtracellularSequence analysisAdd BLAST	161
Transmembraneⁱ	931 – 951	HelicalSequence analysisAdd BLAST	21
Topological domainⁱ	952 – 1115	CytoplasmicSequence analysisAdd BLAST	164

Keywords - Cellular componentⁱ

Cell junction, Cell membrane, Membrane, Postsynaptic cell membrane, Synapse

Pathology & Biotechⁱ

Organism-specific databases

DisGeNET More...DisGeNETⁱ	116443
Open Targets More...OpenTargetsⁱ	ENSG00000198785
PharmGKBⁱ	PA28983

Chemistry databases

ChEMBLⁱ	CHEMBL4787
Drug and drug target database More...DrugBankⁱ	DB00659 Acamprosate DB06151 Acetylcysteine DB00915 Amantadine DB00289 Atomoxetine DB01161 Chloroprocaine DB00514 Dextromethorphan DB00898 Ethanol DB00392 Ethopropazine DB00949 Felbamate DB00996 Gabapentin DB06741 Gavestinel DB01159 Halothane DB01221 Ketamine DB06738 Ketobemidone DB00142 L-Glutamic Acid DB01043 Memantine DB00333 Methadone DB04896 Milnacipran DB04926 Neramexane DB01173 Orphenadrine DB00312 Pentobarbital DB03575 Phencyclidine DB01174 Phenobarbital DB01708 Prasterone DB00721 Procaine DB01549 Rolicyclidine DB00418 Secobarbital DB01520 Tenocyclidine DB00193 Tramadol

ChEMBLⁱ

CHEMBL4787

DrugBankⁱ

DB00659 Acamprosate
DB06151 Acetylcysteine
DB00915 Amantadine
DB00289 Atomoxetine
DB01161 Chloroprocaine
DB00514 Dextromethorphan
DB00898 Ethanol
DB00392 Ethopropazine
DB00949 Felbamate
DB00996 Gabapentin
DB06741 Gavestinel
DB01159 Halothane
DB01221 Ketamine
DB06738 Ketobemidone
DB00142 L-Glutamic Acid
DB01043 Memantine
DB00333 Methadone
DB04896 Milnacipran
DB04926 Neramexane
DB01173 Orphenadrine
DB00312 Pentobarbital
DB03575 Phencyclidine
DB01174 Phenobarbital
DB01708 Prasterone
DB00721 Procaine
DB01549 Rolicyclidine
DB00418 Secobarbital
DB01520 Tenocyclidine
DB00193 Tramadol

Polymorphism and mutation databases

BioMutaⁱ	GRIN3A
DMDMⁱ	212276445

PTM / Processingⁱ

Molecule processing

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Signal peptideⁱ	1 – 23	Sequence analysisAdd BLAST		23
ChainⁱPRO_0000011568	24 – 1115	Glutamate receptor ionotropic, NMDA 3AAdd BLAST		1092

Amino acid modifications

Feature key	Position(s)	DescriptionActions	Length
Glycosylationⁱ	145	N-linked (GlcNAc...) asparagineSequence analysis	1
Glycosylationⁱ	264	N-linked (GlcNAc...) asparagineSequence analysis	1
Glycosylationⁱ	275	N-linked (GlcNAc...) asparagineSequence analysis	1
Glycosylationⁱ	285	N-linked (GlcNAc...) asparagineSequence analysis	1
Glycosylationⁱ	296	N-linked (GlcNAc...) asparagineSequence analysis	1
Glycosylationⁱ	426	N-linked (GlcNAc...) asparagineSequence analysis	1
Glycosylationⁱ	439	N-linked (GlcNAc...) asparagineSequence analysis	1
Glycosylationⁱ	549	N-linked (GlcNAc...) asparagineSequence analysis	1
Glycosylationⁱ	565	N-linked (GlcNAc...) asparagineSequence analysis	1
Glycosylationⁱ	886	N-linked (GlcNAc...) asparagineSequence analysis	1

Post-translational modificationⁱ

N-glycosylated.By similarity

Keywords - PTMⁱ

Glycoprotein

Proteomic databases

PaxDbⁱ	Q8TCU5
PeptideAtlas More...PeptideAtlasⁱ	Q8TCU5
PRIDEⁱ	Q8TCU5
ProteomicsDBⁱ	74174

PTM databases

iPTMnetⁱ	Q8TCU5
PhosphoSitePlusⁱ	Q8TCU5

Expressionⁱ

Developmental stageⁱ

Expressed in fetal brain.

Gene expression databases

Bgeeⁱ	ENSG00000198785 Expressed in 91 organ(s), highest expression level in dorsolateral prefrontal cortex
CleanExⁱ	HS_GRIN3A
Genevisibleⁱ	Q8TCU5 HS

Interactionⁱ

Subunit structureⁱ

Forms heteromeric channel of a zeta subunit (GRIN1), a epsilon subunit (GRIN2A, GRIN2B, GRIN2C or GRIN2D) and a third subunit (GRIN3A or GRIN3B). Does not form functional homomeric channels. Found in a complex with GRIN1, GRIN2A or GRIN2B and PPP2CB. Probably interacts with PPP2CB. No complex with PPP2CB is detected when NMDARs are stimulated by NMDA (By similarity).By similarity

GO - Molecular functionⁱ

identical protein binding
Source: UniProtKB
Inferred from physical interactionⁱ
- 17997397
protein phosphatase 2A binding Source: UniProtKB

View the complete GO annotation on QuickGO ...

Protein-protein interaction databases

BioGridⁱ	125508, 2 interactors
STRINGⁱ	9606.ENSP00000355155

Structureⁱ

3D structure databases

ProteinModelPortalⁱ	Q8TCU5
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Family & Domainsⁱ

Region

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Regionⁱ	951 – 987	PPP2CB binding siteBy similarityAdd BLAST		37

Coiled coil

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Coiled coilⁱ	1058 – 1109	Sequence analysisAdd BLAST		52

Sequence similaritiesⁱ

Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. NR3A/GRIN3A subfamily. [View classification]Curated

Keywords - Domainⁱ

Coiled coil, Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGⁱ	KOG1053 Eukaryota ENOG410XNUR LUCA
Ensembl GeneTree More...GeneTreeⁱ	ENSGT00910000143978
HOGENOMⁱ	HOG000231528
HOVERGENⁱ	HBG052634
InParanoidⁱ	Q8TCU5
KEGG Orthology (KO) More...KOⁱ	K05213
OMAⁱ	TQFGVMP
Database of Orthologous Groups More...OrthoDBⁱ	EOG091G00PT
PhylomeDBⁱ	Q8TCU5
TreeFamⁱ	TF314731

Family and domain databases

InterProⁱ	View protein in InterPro IPR019594 Glu/Gly-bd IPR001508 Iono_rcpt_met IPR001320 Iontro_rcpt IPR028082 Peripla_BP_I
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF00060 Lig_chan, 1 hit PF10613 Lig_chan-Glu_bd, 1 hit
PRINTSⁱ	PR00177 NMDARECEPTOR
SMARTⁱ	View protein in SMART SM00918 Lig_chan-Glu_bd, 1 hit SM00079 PBPe, 1 hit
SUPFAMⁱ	SSF53822 SSF53822, 1 hit

Sequenceⁱ

Sequence statusⁱ: Complete.

Sequence processingⁱ: The displayed sequence is further processed into a mature form.

Q8TCU5-1 [UniParc]FASTA Add to basket

« Hide

        10         20         30         40         50
MRRLSLWWLL SRVCLLLPPP CALVLAGVPS SSSHPQPCQI LKRIGHAVRV 
        60         70         80         90        100
GAVHLQPWTT APRAASRAPD DSRAGAQRDE PEPGTRRSPA PSPGARWLGS 
       110        120        130        140        150
TLHGRGPPGS RKPGEGARAE ALWPRDALLF AVDNLNRVEG LLPYNLSLEV 
       160        170        180        190        200
VMAIEAGLGD LPLLPFSSPS SPWSSDPFSF LQSVCHTVVV QGVSALLAFP 
       210        220        230        240        250
QSQGEMMELD LVSLVLHIPV ISIVRHEFPR ESQNPLHLQL SLENSLSSDA 
       260        270        280        290        300
DVTVSILTMN NWYNFSLLLC QEDWNITDFL LLTQNNSKFH LGSIINITAN 
       310        320        330        340        350
LPSTQDLLSF LQIQLESIKN STPTVVMFGC DMESIRRIFE ITTQFGVMPP 
       360        370        380        390        400
ELRWVLGDSQ NVEELRTEGL PLGLIAHGKT TQSVFEHYVQ DAMELVARAV 
       410        420        430        440        450
ATATMIQPEL ALIPSTMNCM EVETTNLTSG QYLSRFLANT TFRGLSGSIR 
       460        470        480        490        500
VKGSTIVSSE NNFFIWNLQH DPMGKPMWTR LGSWQGGKIV MDYGIWPEQA 
       510        520        530        540        550
QRHKTHFQHP SKLHLRVVTL IEHPFVFTRE VDDEGLCPAG QLCLDPMTND 
       560        570        580        590        600
SSTLDSLFSS LHSSNDTVPI KFKKCCYGYC IDLLEKIAED MNFDFDLYIV 
       610        620        630        640        650
GDGKYGAWKN GHWTGLVGDL LRGTAHMAVT SFSINTARSQ VIDFTSPFFS 
       660        670        680        690        700
TSLGILVRTR DTAAPIGAFM WPLHWTMWLG IFVALHITAV FLTLYEWKSP 
       710        720        730        740        750
FGLTPKGRNR SKVFSFSSAL NICYALLFGR TVAIKPPKCW TGRFLMNLWA 
       760        770        780        790        800
IFCMFCLSTY TANLAAVMVG EKIYEELSGI HDPKLHHPSQ GFRFGTVRES 
       810        820        830        840        850
SAEDYVRQSF PEMHEYMRRY NVPATPDGVE YLKNDPEKLD AFIMDKALLD 
       860        870        880        890        900
YEVSIDADCK LLTVGKPFAI EGYGIGLPPN SPLTANISEL ISQYKSHGFM 
       910        920        930        940        950
DMLHDKWYRV VPCGKRSFAV TETLQMGIKH FSGLFVLLCI GFGLSILTTI 
       960        970        980        990       1000
GEHIVYRLLL PRIKNKSKLQ YWLHTSQRLH RAINTSFIEE KQQHFKTKRV 
      1010       1020       1030       1040       1050
EKRSNVGPRQ LTVWNTSNLS HDNRRKYIFS DEEGQNQLGI RIHQDIPLPP 
      1060       1070       1080       1090       1100
RRRELPALRT TNGKADSLNV SRNSVMQELS ELEKQIQVIR QELQLAVSRK 
      1110 
TELEEYQRTS RTCES

Length:1,115

Mass (Da):125,465

Last modified:November 4, 2008 - v2

Checksum:ⁱ0FEEC995F6AAF940

GO

Sequence cautionⁱ

The sequence BAB85559 differs from that shown. Reason: Erroneous initiation.Curated

Experimental Info

Feature key	Position(s)	DescriptionActions	Length
Sequence conflictⁱ	559	S → N in AAL40734 (PubMed:11735224).Curated	1
Sequence conflictⁱ	977	Q → R in AAL40734 (PubMed:11735224).Curated	1
Sequence conflictⁱ	1073	N → I in AAL40734 (PubMed:11735224).Curated	1

Natural variant

Feature key	Position(s)	DescriptionActions	Length
Natural variantⁱVAR_079892	72	S → I1 PublicationCorresponds to variant dbSNP:rs558734093Ensembl.	1
Natural variantⁱVAR_079893	111	R → G Found in a patient with autism spectrum disorder; unknown pathological significance. 1 Publication	1
Natural variantⁱVAR_079894	116	G → S1 PublicationCorresponds to variant dbSNP:rs111415222Ensembl.	1
Natural variantⁱVAR_079895	227 – 1115	Missing 1 PublicationAdd BLAST	889
Natural variantⁱVAR_079896	337	R → W1 PublicationCorresponds to variant dbSNP:rs773593066Ensembl.	1
Natural variantⁱVAR_019672	362	V → M1 PublicationCorresponds to variant dbSNP:rs10989591Ensembl.	1
Natural variantⁱVAR_079897	373	G → R Found in a patient with autism spectrum disorder; unknown pathological significance. 1 Publication	1
Natural variantⁱVAR_079898	375	I → T1 PublicationCorresponds to variant dbSNP:rs144427058Ensembl.	1
Natural variantⁱVAR_079899	434	S → P1 PublicationCorresponds to variant dbSNP:rs776062103Ensembl.	1
Natural variantⁱVAR_047150	480	R → H. Corresponds to variant dbSNP:rs34755188Ensembl.	1
Natural variantⁱVAR_019673	487	G → R2 PublicationsCorresponds to variant dbSNP:rs10989589Ensembl.	1
Natural variantⁱVAR_079900	493	Y → F1 PublicationCorresponds to variant dbSNP:rs773322226Ensembl.	1
Natural variantⁱVAR_079901	508 – 1115	Missing Probable disease-associated mutation found in a patient with schizophrenia. 1 PublicationAdd BLAST	608
Natural variantⁱVAR_079902	565	N → S1 PublicationCorresponds to variant dbSNP:rs371244839Ensembl.	1
Natural variantⁱVAR_079903	586	K → N1 PublicationCorresponds to variant dbSNP:rs142284927Ensembl.	1
Natural variantⁱVAR_079904	641	V → L Found in a patient with autism spectrum disorder; unknown pathological significance. 1 Publication	1
Natural variantⁱVAR_079905	793	R → S1 PublicationCorresponds to variant dbSNP:rs144770241Ensembl.	1
Natural variantⁱVAR_019674	835	D → N1 PublicationCorresponds to variant dbSNP:rs10989563Ensembl.	1
Natural variantⁱVAR_079906	921	T → M1 PublicationCorresponds to variant dbSNP:rs144712629Ensembl.	1
Natural variantⁱVAR_079907	956	Y → H1 PublicationCorresponds to variant dbSNP:rs141253502Ensembl.	1
Natural variantⁱVAR_079908	1028	I → N Found in a patient with schizophrenia; unknown pathological significance. 1 PublicationCorresponds to variant dbSNP:rs755464674Ensembl.	1
Natural variantⁱVAR_019675	1041	R → Q2 PublicationsCorresponds to variant dbSNP:rs3739722Ensembl.	1

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AF416558 mRNA Translation: AAL40734.1 AJ416950 mRNA Translation: CAC95229.2 AB075853 mRNA Translation: BAB85559.1 Different initiation. AL591377 Genomic DNA No translation available. AL356516 Genomic DNA No translation available. BC167432 mRNA Translation: AAI67432.1
The Consensus CDS (CCDS) project More...CCDSⁱ	CCDS6758.1
NCBI Reference Sequences More...RefSeqⁱ	NP_597702.2, NM_133445.2
UniGeneⁱ	Hs.654783

Genome annotation databases

Ensemblⁱ	ENST00000361820; ENSP00000355155; ENSG00000198785
GeneIDⁱ	116443
KEGGⁱ	hsa:116443
UCSC genome browser More...UCSCⁱ	uc004bbp.3 human

Keywords - Coding sequence diversityⁱ

Polymorphism

Similar proteinsⁱ

90% Identity
50% Identity

Protein	Similar proteins		Species	Score	Length	Source
Q8TCU5	Glutamate ionotropic receptor NMDA type subunit 3A		RHIBE		1139	UniRef90_Q8TCU5
Glutamate ionotropic receptor NMDA type subunit 3A		MUSPF		1135
glutamate receptor ionotropic, NMDA 3A isoform X1		Enhydra lutris kenyoni		1135
glutamate receptor ionotropic, NMDA 3A isoform X1		DIPOR		1134
Glutamate ionotropic receptor NMDA type subunit 3A		PONAB		1120
+120

Protein	Similar proteins		Species	Score	Length	Source
Q8TCU5	Glutamate ionotropic receptor NMDA type subunit 3A		RHIBE		1139	UniRef50_Q8TCU5
Glutamate ionotropic receptor NMDA type subunit 3A		MUSPF		1135
glutamate receptor ionotropic, NMDA 3A isoform X1		Enhydra lutris kenyoni		1135
glutamate receptor ionotropic, NMDA 3A isoform X1		DIPOR		1134
Glutamate ionotropic receptor NMDA type subunit 3A		PONAB		1120
+169

Entry informationⁱ

Entry nameⁱ	NMD3A_HUMAN
Accessionⁱ	Q8TCU5Primary (citable) accession number: Q8TCU5 Secondary accession number(s): B3DLF9 , Q5VTR3, Q8TF29, Q8WXI6
Entry historyⁱ	Integrated into UniProtKB/Swiss-Prot:	August 31, 2004
	Last sequence update:	November 4, 2008
	Last modified:	September 12, 2018
	This is version 146 of the entry and version 2 of the sequence. See complete history.
Entry statusⁱ	Reviewed (UniProtKB/Swiss-Prot)
Annotation program	Chordata Protein Annotation Program
Disclaimer	Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousⁱ

Keywords - Technical termⁱ

Complete proteome, Reference proteome

UniProtKB

UniParc

Help

UniRef

Proteomes

Annotation systems

Supporting data

UniProtKB - Q8TCU5 (NMD3A_HUMAN)

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Glutamate receptor ionotropic, NMDA 3A

Select a section on the left to see content.

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

Organism-specific databases

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Plasma membrane

Plasma Membrane

Other locations

Topology

Keywords - Cellular componenti

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Organism-specific databases

Chemistry databases

Polymorphism and mutation databases

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Amino acid modifications

Keywords - PTMi

Proteomic databases

PTM databases

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

GO - Molecular functioni

Protein-protein interaction databases

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Coiled coil

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Keywords - Domaini

Phylogenomic databases

Family and domain databases

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

Experimental Info

Natural variant

Sequence databases

Genome annotation databases

Keywords - Coding sequence diversityi

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

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Functionⁱ

GO - Molecular functionⁱ

GO - Biological processⁱ

Names & Taxonomyⁱ

Subcellular locationⁱ

Keywords - Cellular componentⁱ

Pathology & Biotechⁱ

PTM / Processingⁱ

Keywords - PTMⁱ

Expressionⁱ

Interactionⁱ

GO - Molecular functionⁱ

Structureⁱ

Family & Domainsⁱ

Sequence similaritiesⁱ

Keywords - Domainⁱ

Sequence cautionⁱ

Keywords - Coding sequence diversityⁱ

Entry informationⁱ

Miscellaneousⁱ

Keywords - Technical termⁱ