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UniProtKB - Q8TAB5 (CA216_HUMAN)

Entry version 118 (08 May 2019)
Sequence version 1 (01 Jun 2002)
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Protein

UPF0500 protein C1orf216

Gene

C1orf216

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
UPF0500 protein C1orf216
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:C1orf216
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHomo sapiens (Human)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9606 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000005640 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Human Gene Nomenclature Database

More...HGNCi		HGNC:26800 C1orf216

neXtProt; the human protein knowledge platform

More...neXtProti		NX_Q8TAB5

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Organism-specific databases

Open Targets

More...OpenTargetsi		ENSG00000142686

The Pharmacogenetics and Pharmacogenomics Knowledge Base

More...PharmGKBi		PA162378892

Polymorphism and mutation databases

BioMuta curated single-nucleotide variation and disease association database

More...BioMutai		C1orf216

Domain mapping of disease mutations (DMDM)

More...DMDMi		74730336

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003091781 – 229UPF0500 protein C1orf216Add BLAST229

Proteomic databases

jPOST - Japan Proteome Standard Repository/Database

More...jPOSTi		Q8TAB5

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		Q8TAB5

PeptideAtlas

More...PeptideAtlasi		Q8TAB5

PRoteomics IDEntifications database

More...PRIDEi		Q8TAB5

ProteomicsDB human proteome resource

More...ProteomicsDBi		73852

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...iPTMneti		Q8TAB5

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...PhosphoSitePlusi		Q8TAB5

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...Bgeei		ENSG00000142686 Expressed in 193 organ(s), highest expression level in occipital lobe

Genevisible search portal to normalized and curated expression data from Genevestigator

More...Genevisiblei		Q8TAB5 HS

Organism-specific databases

Human Protein Atlas

More...HPAi		HPA028299
HPA031343

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction_section%27">Interaction</a> section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="http://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated on a monthly basis. Each binary interaction is displayed on a separate line.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...BioGridi		126079, 28 interactors

Protein interaction database and analysis system

More...IntActi		Q8TAB5, 69 interactors

Molecular INTeraction database

More...MINTi		Q8TAB5

STRING: functional protein association networks

More...STRINGi		9606.ENSP00000425166

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the UPF0500 family.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG410IKSK Eukaryota
ENOG410Z0RG LUCA

Ensembl GeneTree

More...GeneTreei		ENSGT00390000001867

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		HOG000111275

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		Q8TAB5

Identification of Orthologs from Complete Genome Data

More...OMAi		EGAEIPG

Database of Orthologous Groups

More...OrthoDBi		1593675at2759

Database for complete collections of gene phylogenies

More...PhylomeDBi		Q8TAB5

TreeFam database of animal gene trees

More...TreeFami		TF335932

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR027812 DUF4653

The PANTHER Classification System

More...PANTHERi		PTHR35673 PTHR35673, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF15546 DUF4653, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q8TAB5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MFAIQPGLAE GGQFLGDPPP GLCQPELQPD SNSNFMASAK DANENWHGMP 
        60         70         80         90        100
GRVEPILRRS SSESPSDNQA FQAPGSPEEG VRSPPEGAEI PGAEPEKMGG 
       110        120        130        140        150
AGTVCSPLED NGYASSSLSI DSRSSSPEPA CGTPRGPGPP DPLLPSVAQA 
       160        170        180        190        200
VQHLQVQERY KEQEKEKHHV HLVMYRRLAL LQWIRGLQHQ LIDQQARLQE 
       210        220 
SFDTILDNRK ELIRCLQQRA APSRPQDQA
Length:229
Mass (Da):24,968
Last modified:June 1, 2002 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i281250E30DC4E730
GO

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence BAC04799 differs from that shown. Reason: Erroneous initiation.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti19P → T in BAC04799 (PubMed:14702039).Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AK096303 mRNA Translation: BAC04755.1
AK096466 mRNA Translation: BAC04799.1 Different initiation.
CH471059 Genomic DNA Translation: EAX07403.1
CH471059 Genomic DNA Translation: EAX07404.1
BC026909 mRNA Translation: AAH26909.1

The Consensus CDS (CCDS) project

More...CCDSi		CCDS395.1

NCBI Reference Sequences

More...RefSeqi		NP_001335620.1, NM_001348691.1
NP_689587.1, NM_152374.1

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...Ensembli		ENST00000270815; ENSP00000425166; ENSG00000142686

Database of genes from NCBI RefSeq genomes

More...GeneIDi		127703

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		hsa:127703

UCSC genome browser

More...UCSCi		uc001bzh.2 human

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK096303 mRNA Translation: BAC04755.1
AK096466 mRNA Translation: BAC04799.1 Different initiation.
CH471059 Genomic DNA Translation: EAX07403.1
CH471059 Genomic DNA Translation: EAX07404.1
BC026909 mRNA Translation: AAH26909.1
CCDSiCCDS395.1
RefSeqiNP_001335620.1, NM_001348691.1
NP_689587.1, NM_152374.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

BioGridi126079, 28 interactors
IntActiQ8TAB5, 69 interactors
MINTiQ8TAB5
STRINGi9606.ENSP00000425166

PTM databases

iPTMnetiQ8TAB5
PhosphoSitePlusiQ8TAB5

Polymorphism and mutation databases

BioMutaiC1orf216
DMDMi74730336

Proteomic databases

jPOSTiQ8TAB5
PaxDbiQ8TAB5
PeptideAtlasiQ8TAB5
PRIDEiQ8TAB5
ProteomicsDBi73852

Protocols and materials databases

The DNASU plasmid repository

More...DNASUi		127703
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000270815; ENSP00000425166; ENSG00000142686
GeneIDi127703
KEGGihsa:127703
UCSCiuc001bzh.2 human

Organism-specific databases

Comparative Toxicogenomics Database

More...CTDi		127703

GeneCards: human genes, protein and diseases

More...GeneCardsi		C1orf216
HGNCiHGNC:26800 C1orf216
HPAiHPA028299
HPA031343
neXtProtiNX_Q8TAB5
OpenTargetsiENSG00000142686
PharmGKBiPA162378892

GenAtlas: human gene database

More...GenAtlasi		Search...

Phylogenomic databases

eggNOGiENOG410IKSK Eukaryota
ENOG410Z0RG LUCA
GeneTreeiENSGT00390000001867
HOGENOMiHOG000111275
InParanoidiQ8TAB5
OMAiEGAEIPG
OrthoDBi1593675at2759
PhylomeDBiQ8TAB5
TreeFamiTF335932

Miscellaneous databases

Database of phenotypes from RNA interference screens in Drosophila and Homo sapiens

More...GenomeRNAii		127703

Protein Ontology

More...PROi		PR:Q8TAB5

Gene expression databases

BgeeiENSG00000142686 Expressed in 193 organ(s), highest expression level in occipital lobe
GenevisibleiQ8TAB5 HS

Family and domain databases

InterProiView protein in InterPro
IPR027812 DUF4653
PANTHERiPTHR35673 PTHR35673, 1 hit
PfamiView protein in Pfam
PF15546 DUF4653, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiCA216_HUMAN
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q8TAB5
Secondary accession number(s): D3DPS1, Q8N8N6
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 13, 2007
Last sequence update: June 1, 2002
Last modified: May 8, 2019
This is version 118 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries
  3. Human chromosome 1
    Human chromosome 1: entries, gene names and cross-references to MIM
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