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UniProtKB - Q8S983 (ARFK_ORYSJ)
Protein
Auxin response factor 11
Gene
ARF11
Organism
Oryza sativa subsp. japonica (Rice)
Status
Functioni
Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regions
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
DNA bindingi | 143 – 245 | TF-B3PROSITE-ProRule annotationAdd BLAST | 103 |
GO - Molecular functioni
- identical protein binding Source: EnsemblPlants
- transcription cis-regulatory region binding Source: EnsemblPlants
GO - Biological processi
- auxin-activated signaling pathway Source: UniProtKB-KW
- flower development Source: EnsemblPlants
- leaf vascular tissue pattern formation Source: EnsemblPlants
- longitudinal axis specification Source: EnsemblPlants
- meristem development Source: EnsemblPlants
- regulation of transcription, DNA-templated Source: EnsemblPlants
- root development Source: EnsemblPlants
Keywordsi
Molecular function | DNA-binding |
Biological process | Auxin signaling pathway, Transcription, Transcription regulation |
Enzyme and pathway databases
PlantReactomei | R-OSA-5608118, Auxin signalling |
Names & Taxonomyi
Protein namesi | Recommended name: Auxin response factor 11Alternative name(s): OsARF5 OsMP Protein MONOPTEROS-like |
Gene namesi | Name:ARF11 Synonyms:ARF5, MP Ordered Locus Names:Os04g0664400, LOC_Os04g56850 ORF Names:OSJNBa0084K01.22 |
Organismi | Oryza sativa subsp. japonica (Rice) |
Taxonomic identifieri | 39947 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › Liliopsida › Poales › Poaceae › BOP clade › Oryzoideae › Oryzeae › Oryzinae › Oryza › Oryza sativa |
Proteomesi |
|
Subcellular locationi
Nucleus
- Nucleus PROSITE-ProRule annotation
Nucleus
- nucleus Source: UniProtKB-SubCell
Keywords - Cellular componenti
NucleusPTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000299267 | 1 – 955 | Auxin response factor 11Add BLAST | 955 |
Proteomic databases
PaxDbi | Q8S983 |
Expressioni
Tissue specificityi
Expressed in roots, culms, leaves and young panicles.1 Publication
Gene expression databases
ExpressionAtlasi | Q8S983, baseline and differential |
Genevisiblei | Q8S983, OS |
Interactioni
Subunit structurei
Homodimers and heterodimers.
By similarityGO - Molecular functioni
- identical protein binding Source: EnsemblPlants
Protein-protein interaction databases
STRINGi | 4530.OS04T0664400-01 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 852 – 936 | PB1PROSITE-ProRule annotationAdd BLAST | 85 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 518 – 573 | DisorderedSequence analysisAdd BLAST | 56 | |
Regioni | 609 – 646 | DisorderedSequence analysisAdd BLAST | 38 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 518 – 543 | Polar residuesSequence analysisAdd BLAST | 26 |
Domaini
Interactions between auxin response factors (ARFs) and Aux/IAA proteins occur through their C-terminal dimerization domains III and IV.
Sequence similaritiesi
Belongs to the ARF family.Curated
Phylogenomic databases
eggNOGi | ENOG502QQ0Y, Eukaryota |
InParanoidi | Q8S983 |
Family and domain databases
CDDi | cd10017, B3_DNA, 1 hit |
Gene3Di | 2.40.330.10, 1 hit |
InterProi | View protein in InterPro IPR010525, ARF_dom IPR044835, ARF_plant IPR033389, AUX/IAA_dom IPR003340, B3_DNA-bd IPR015300, DNA-bd_pseudobarrel_sf IPR000270, PB1_dom |
PANTHERi | PTHR31384, PTHR31384, 1 hit |
Pfami | View protein in Pfam PF02309, AUX_IAA, 1 hit PF06507, Auxin_resp, 1 hit PF02362, B3, 1 hit |
SMARTi | View protein in SMART SM01019, B3, 1 hit |
SUPFAMi | SSF101936, SSF101936, 1 hit |
PROSITEi | View protein in PROSITE PS50863, B3, 1 hit PS51745, PB1, 1 hit |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All
Q8S983-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MASSQEKAKT GVLRNAAALL DEMQLMGETQ GAKKVINSEL WHACAGPLVC
60 70 80 90 100
LPQRGSLVYY FPQGHSEQVA ATTRKIPNSR IPNYPNLPSQ LLCQVHNITL
110 120 130 140 150
HADKDTDEVY AQMTLQPVNS ETDVFPIPTL GAYTKSKHPT EYFCKNLTAS
160 170 180 190 200
DTSTHGGFSV PRRAAEKLFP QLDYSMQPPN QELIVRDLHD NMWTFRHIYR
210 220 230 240 250
GQPKRHLLTT GWSLFVGAKR LKAGDSVLFI RDEKSQLLLG VRRATRQQTM
260 270 280 290 300
LSSSVLSTDS MHIGVLAAAA HAASSGSSFT IYYNPRTSPS PFVIPVARYN
310 320 330 340 350
KATYMQPSVG MRFAMMFETE ESSKRRYTGT VVGISDYDPM RWPNSKWRNL
360 370 380 390 400
QVEWDEHGYG ERPERVSIWD IETPENTLVF PSSTLNSKRQ CLPGYGVSVP
410 420 430 440 450
GMEIGSANMS SFPRAQGNPY GSLQHIPAVG SELAIMLLNQ SGQTLGSPLS
460 470 480 490 500
FHQSSYSSII QNVKQNYIPP LTVSTSACLT KQESLPSDDA QHQFHMANMQ
510 520 530 540 550
NGDLEGSEVQ PVIDSISESK LNATSRDPRN TDSYTSRSTS EQNSKGEPRG
560 570 580 590 600
KTRRSKKGLP HKTVSEKSDL SSAPSWICDN QQVGLESKLV GCDEQVNCGN
610 620 630 640 650
IEDSSGALTQ GNFVGQPHGH QVEQKGVLSP PKVESSKSPD GGKSVNSFPN
660 670 680 690 700
QGCFSQFIDG LDWMTQPSYY QDSNVIQPAG VSENIFSSSA DIPPSMIADT
710 720 730 740 750
METFQASCLS DCLPNSIQEF ISSPDLNSLT FLSPDMQNLE VQLQHDGSNL
760 770 780 790 800
PSTSNSFVQM SFSEESASQS ANLSGLHMES THRSINTTSC SQPMSTGGFD
810 820 830 840 850
AGMYSKLPRL KESQILSLPE IHTNSMGTSA CSMDATEYSL DRSAKPMKPP
860 870 880 890 900
VRTYTKVQKQ GSVGRSIDVT GFRNYHELRS AIACMFGLQG KLEHPGSSEW
910 920 930 940 950
KLVYVDYEND VLLVGDDPWE EFINCVRCIR ILSPSEVQQM SENGMHVLND
CIQAA
Computationally mapped potential isoform sequencesi
There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basketA0A0N7KJV7 | A0A0N7KJV7_ORYSJ | Auxin response factor | Os04g0664400, OSNPB_040664400 | 920 | Annotation score: | ||
A0A0P0WG28 | A0A0P0WG28_ORYSJ | Auxin response factor | Os04g0664400, OSNPB_040664400 | 736 | Annotation score: |
Sequence cautioni
The sequence CAE04850 differs from that shown. Reason: Erroneous gene model prediction.Curated
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AB071292 mRNA Translation: BAB85912.1 AL606999 Genomic DNA Translation: CAE04850.2 Sequence problems. AP008210 Genomic DNA Translation: BAF16083.2 AP014960 Genomic DNA No translation available. |
Genome annotation databases
EnsemblPlantsi | Os04t0664400-02; Os04t0664400-02; Os04g0664400 |
Gramenei | Os04t0664400-02; Os04t0664400-02; Os04g0664400 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AB071292 mRNA Translation: BAB85912.1 AL606999 Genomic DNA Translation: CAE04850.2 Sequence problems. AP008210 Genomic DNA Translation: BAF16083.2 AP014960 Genomic DNA No translation available. |
3D structure databases
AlphaFoldDBi | Q8S983 |
SMRi | Q8S983 |
ModBasei | Search... |
Protein-protein interaction databases
STRINGi | 4530.OS04T0664400-01 |
Proteomic databases
PaxDbi | Q8S983 |
Genome annotation databases
EnsemblPlantsi | Os04t0664400-02; Os04t0664400-02; Os04g0664400 |
Gramenei | Os04t0664400-02; Os04t0664400-02; Os04g0664400 |
Phylogenomic databases
eggNOGi | ENOG502QQ0Y, Eukaryota |
InParanoidi | Q8S983 |
Enzyme and pathway databases
PlantReactomei | R-OSA-5608118, Auxin signalling |
Gene expression databases
ExpressionAtlasi | Q8S983, baseline and differential |
Genevisiblei | Q8S983, OS |
Family and domain databases
CDDi | cd10017, B3_DNA, 1 hit |
Gene3Di | 2.40.330.10, 1 hit |
InterProi | View protein in InterPro IPR010525, ARF_dom IPR044835, ARF_plant IPR033389, AUX/IAA_dom IPR003340, B3_DNA-bd IPR015300, DNA-bd_pseudobarrel_sf IPR000270, PB1_dom |
PANTHERi | PTHR31384, PTHR31384, 1 hit |
Pfami | View protein in Pfam PF02309, AUX_IAA, 1 hit PF06507, Auxin_resp, 1 hit PF02362, B3, 1 hit |
SMARTi | View protein in SMART SM01019, B3, 1 hit |
SUPFAMi | SSF101936, SSF101936, 1 hit |
PROSITEi | View protein in PROSITE PS50863, B3, 1 hit PS51745, PB1, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | ARFK_ORYSJ | |
Accessioni | Q8S983Primary (citable) accession number: Q8S983 Secondary accession number(s): Q0J9A4, Q7XM09 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | September 11, 2007 |
Last sequence update: | June 1, 2002 | |
Last modified: | May 25, 2022 | |
This is version 119 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Plant Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- Oryza sativa (rice)
Index of Oryza sativa entries and their corresponding gene designations - SIMILARITY comments
Index of protein domains and families