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Protein

Probable membrane-associated 30 kDa protein, chloroplastic

Gene

Os01g0895100

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Biological processi

Keywordsi

Biological processHost-virus interaction

Names & Taxonomyi

Protein namesi
Recommended name:
Probable membrane-associated 30 kDa protein, chloroplastic
Gene namesi
Ordered Locus Names:Os01g0895100, LOC_Os01g67000
ORF Names:B1078G07.38, OsJ_04390Imported, P0696G06.15
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, Membrane, Plastid, Plastid inner membrane, Thylakoid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_0000029849? – 317Probable membrane-associated 30 kDa protein, chloroplastic
Transit peptidei1 – ?ChloroplastSequence analysis

Proteomic databases

PaxDbiQ8S0J7
PRIDEiQ8S0J7

Expressioni

Gene expression databases

ExpressionAtlasiQ8S0J7 differential
GenevisibleiQ8S0J7 OS

Interactioni

Subunit structurei

Interacts with the rice tungro bacilliform virus (RTBV) capsid protein.1 Publication

Protein-protein interaction databases

STRINGi39947.LOC_Os01g67000.1

Structurei

3D structure databases

SMRiQ8S0J7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili92 – 246Sequence analysisAdd BLAST155

Sequence similaritiesi

Belongs to the PspA/IM30 family.Curated

Keywords - Domaini

Coiled coil, Transit peptide

Phylogenomic databases

eggNOGiENOG410IJ56 Eukaryota
COG1842 LUCA
HOGENOMiHOG000227268
InParanoidiQ8S0J7
KOiK03969
OMAiMIFRAKA
OrthoDBiEOG09360FRF

Family and domain databases

InterProiView protein in InterPro
IPR007157 PspA_IM30
PfamiView protein in Pfam
PF04012 PspA_IM30, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q8S0J7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEIRAPPTSL RLAPPPPASA SFRRTALRTS FLNGSVSLRL IQVRQSNVNR
60 70 80 90 100
FKCNGIRSNL LDRFSRVVKS YANAVLSSFE DPEKILDQAV LEMNDDLTKM
110 120 130 140 150
RQATAQVLAS QKRLENKYKA AEQASDDWYR RAQLALQKGD EDLAREALKR
160 170 180 190 200
RKSYADNASS LKAQLDQQKG VVENLVSNTR VLESKIAEAK QKKDTLKARA
210 220 230 240 250
QSAKTSTKVS EMLGNVNTSG ALSAFEKMEE KVMAMESQAE ALGQLATDDL
260 270 280 290 300
EGKFALLETS SVDDDLAQMK KEISGSSSKG ELPPGRTAVS NSGAARPFRD
310
IEIENELNEL RKKANEY
Length:317
Mass (Da):35,089
Last modified:June 1, 2002 - v1
Checksum:iE85F12D0B1E0334F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP003316 Genomic DNA Translation: BAC06258.1
AP003407 Genomic DNA Translation: BAB90216.1
AP008207 Genomic DNA Translation: BAF06987.1
AP014957 Genomic DNA Translation: BAS75695.1
CM000138 Genomic DNA Translation: EAZ14468.1
AK058611 mRNA Translation: BAG86752.1
AK067698 mRNA Translation: BAG90547.1
RefSeqiXP_015615370.1, XM_015759884.1
UniGeneiOs.6371

Genome annotation databases

EnsemblPlantsiOs01t0895100-01; Os01t0895100-01; Os01g0895100
Os01t0895100-02; Os01t0895100-02; Os01g0895100
GeneIDi4324967
GrameneiOs01t0895100-01; Os01t0895100-01; Os01g0895100
Os01t0895100-02; Os01t0895100-02; Os01g0895100
KEGGiosa:4324967

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP003316 Genomic DNA Translation: BAC06258.1
AP003407 Genomic DNA Translation: BAB90216.1
AP008207 Genomic DNA Translation: BAF06987.1
AP014957 Genomic DNA Translation: BAS75695.1
CM000138 Genomic DNA Translation: EAZ14468.1
AK058611 mRNA Translation: BAG86752.1
AK067698 mRNA Translation: BAG90547.1
RefSeqiXP_015615370.1, XM_015759884.1
UniGeneiOs.6371

3D structure databases

SMRiQ8S0J7
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os01g67000.1

Proteomic databases

PaxDbiQ8S0J7
PRIDEiQ8S0J7

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOs01t0895100-01; Os01t0895100-01; Os01g0895100
Os01t0895100-02; Os01t0895100-02; Os01g0895100
GeneIDi4324967
GrameneiOs01t0895100-01; Os01t0895100-01; Os01g0895100
Os01t0895100-02; Os01t0895100-02; Os01g0895100
KEGGiosa:4324967

Phylogenomic databases

eggNOGiENOG410IJ56 Eukaryota
COG1842 LUCA
HOGENOMiHOG000227268
InParanoidiQ8S0J7
KOiK03969
OMAiMIFRAKA
OrthoDBiEOG09360FRF

Gene expression databases

ExpressionAtlasiQ8S0J7 differential
GenevisibleiQ8S0J7 OS

Family and domain databases

InterProiView protein in InterPro
IPR007157 PspA_IM30
PfamiView protein in Pfam
PF04012 PspA_IM30, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiIM30_ORYSJ
AccessioniPrimary (citable) accession number: Q8S0J7
Secondary accession number(s): Q0JGZ1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 1, 2004
Last sequence update: June 1, 2002
Last modified: May 23, 2018
This is version 89 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
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