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Entry version 111 (11 Dec 2019)
Sequence version 1 (01 Jun 2002)
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Protein

Inactive poly [ADP-ribose] polymerase RCD1

Gene

RCD1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Inactive ADP-ribosyltransferase that functions with SRO1 to regulate oxidative stress, hormonal and developmental responses. Required for embryogenesis, vegetative and reproductive development, and abiotic stress responses. May regulate several stress-responsive genes. Seems to play a larger developmental role than SRO1. Does not bind NAD in vitro.10 Publications

Miscellaneous

Plants overexpressing RCD1 show a weak rcd1 mutant phenotype.

Caution

Lacks the conserved catalytic triad His-Tyr-Glu of the active site.Curated

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDevelopmental protein
Biological processHost-virus interaction, Stress response

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Inactive poly [ADP-ribose] polymerase RCD1
Alternative name(s):
Protein RADICAL-INDUCED CELL DEATH 1
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:RCD1
Synonyms:ATP8, CEO1
Ordered Locus Names:At1g32230
ORF Names:F3C3.1
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT1G32230

The Arabidopsis Information Resource

More...
TAIRi
locus:2031700 AT1G32230

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the ‘Pathology and Biotech’ section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

Small plants, altered leaf shape and early flowering. Plants lacking RCD1 show enhanced resistance to methyl viologen, tolerance to freezing and supplementary UV-B irradiation, reduced sensitivity to abscisic acid, ethylene and jasmonate, increased sensitivity to ozone and up-regulation of reactive oxygen species scavenging enzymes.7 Publications

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004104181 – 589Inactive poly [ADP-ribose] polymerase RCD1Add BLAST589

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q8RY59

PRoteomics IDEntifications database

More...
PRIDEi
Q8RY59

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed in young developing tissues, such as young leaves and flowers and root tips. In mature plants, expressed in vasculature of leaves and roots, and guard cells.4 Publications

<p>This subsection of the ‘Expression’ section provides information on the expression of the gene product at various stages of a cell, tissue or organism development. By default, the information is derived from experiments at the mRNA level, unless specified ‘at the protein level’.<p><a href='/help/developmental_stage' target='_top'>More...</a></p>Developmental stagei

Expressed in the embryo proper at the globular stage. Expressed in the embryo until the torpedo stage, after which expression within the procambial strands becomes pronounced.1 Publication

<p>This subsection of the ‘Expression’ section reports the experimentally proven effects of inducers and repressors (usually chemical compounds or environmental factors) on the level of protein (or mRNA) expression (up-regulation, down-regulation, constitutive expression).<p><a href='/help/induction' target='_top'>More...</a></p>Inductioni

By ozone, salt stress and cadmium.3 Publications

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q8RY59 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q8RY59 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Interacts with the transcription factors NAC013/NTL1 and NAC046 (PubMed:25348421).

Interacts with dehydration-responsive DREB2 proteins and a number of transcription factors belonging to several protein families.

Interacts with turnip crinkle virus (TCV) movement protein P8.

4 Publications

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction_section%27">Interaction</a> section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="http://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated on a monthly basis. Each binary interaction is displayed on a separate line.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

Show more details

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...
BioGridi
25349, 34 interactors

Database of interacting proteins

More...
DIPi
DIP-52884N

Protein interaction database and analysis system

More...
IntActi
Q8RY59, 30 interactors

STRING: functional protein association networks

More...
STRINGi
3702.AT1G32230.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

1589
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q8RY59

Database of comparative protein structure models

More...
ModBasei
Search...

Protein Data Bank in Europe - Knowledge Base

More...
PDBe-KBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini64 – 153WWEPROSITE-ProRule annotationAdd BLAST90
Domaini248 – 469PARP catalyticPROSITE-ProRule annotationAdd BLAST222
Domaini501 – 572RSTPROSITE-ProRule annotationAdd BLAST72

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG410IHK4 Eukaryota
ENOG410YCU9 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000240570

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q8RY59

Database of Orthologous Groups

More...
OrthoDBi
458629at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q8RY59

Family and domain databases

Database of protein disorder

More...
DisProti
DP01180

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR012317 Poly(ADP-ribose)pol_cat_dom
IPR022003 RST
IPR004170 WWE-dom

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00644 PARP, 1 hit
PF12174 RST, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51059 PARP_CATALYTIC, 1 hit
PS51879 RST, 1 hit
PS50918 WWE, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (2+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 2 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 2 described isoforms and 1 potential isoform that is computationally mapped.Show allAlign All

Isoform 1 (identifier: Q8RY59-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC
60 70 80 90 100
QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
110 120 130 140 150
NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP
160 170 180 190 200
LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
210 220 230 240 250
GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA
260 270 280 290 300
VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
310 320 330 340 350
SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV
360 370 380 390 400
GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
410 420 430 440 450
LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL
460 470 480 490 500
SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
510 520 530 540 550
TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL
560 570 580
RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
Length:589
Mass (Da):65,697
Last modified:June 1, 2002 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i1803D75683524CDC
GO
Isoform 2 (identifier: Q8RY59-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     485-485: Missing.

Note: May be due to a competing acceptor splice site.Curated
Show »
Length:588
Mass (Da):65,568
Checksum:i08B8E7ED4B28B506
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F4ICM3F4ICM3_ARATH
Poly [ADP-ribose] polymerase
RCD1 ATP8, AtRCD1, CEO, CEO1, RADICAL-INDUCED CELL DEATH1
570Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAK54509 differs from that shown. Sequencing errors.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti522A → V in CAC14428 (PubMed:11018516).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_041441485Missing in isoform 2. 2 Publications1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AJ251578 mRNA Translation: CAC14428.1
AF317898 mRNA Translation: AAK54509.1 Sequence problems.
AY578788 Genomic DNA Translation: AAS91732.1
AC084165 Genomic DNA Translation: AAG23444.1
CP002684 Genomic DNA Translation: AEE31452.1
CP002684 Genomic DNA Translation: AEE31453.1
CP002684 Genomic DNA Translation: ANM57850.1
CP002684 Genomic DNA Translation: ANM57851.1
CP002684 Genomic DNA Translation: ANM57852.1
AY059796 mRNA Translation: AAL24144.1
AY075633 mRNA Translation: AAL91641.1
AY142655 mRNA Translation: AAN13193.1

Protein sequence database of the Protein Information Resource

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PIRi
H86446

NCBI Reference Sequences

More...
RefSeqi
NP_001320330.1, NM_001333000.1 [Q8RY59-2]
NP_001320331.1, NM_001332998.1 [Q8RY59-2]
NP_001320332.1, NM_001332999.1 [Q8RY59-2]
NP_564391.1, NM_102956.3 [Q8RY59-1]
NP_849739.1, NM_179408.3 [Q8RY59-2]

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT1G32230.1; AT1G32230.1; AT1G32230 [Q8RY59-1]
AT1G32230.2; AT1G32230.2; AT1G32230 [Q8RY59-2]
AT1G32230.4; AT1G32230.4; AT1G32230 [Q8RY59-2]
AT1G32230.5; AT1G32230.5; AT1G32230 [Q8RY59-2]
AT1G32230.6; AT1G32230.6; AT1G32230 [Q8RY59-2]

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
840115

Gramene; a comparative resource for plants

More...
Gramenei
AT1G32230.1; AT1G32230.1; AT1G32230 [Q8RY59-1]
AT1G32230.2; AT1G32230.2; AT1G32230 [Q8RY59-2]
AT1G32230.4; AT1G32230.4; AT1G32230 [Q8RY59-2]
AT1G32230.5; AT1G32230.5; AT1G32230 [Q8RY59-2]
AT1G32230.6; AT1G32230.6; AT1G32230 [Q8RY59-2]

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT1G32230

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ251578 mRNA Translation: CAC14428.1
AF317898 mRNA Translation: AAK54509.1 Sequence problems.
AY578788 Genomic DNA Translation: AAS91732.1
AC084165 Genomic DNA Translation: AAG23444.1
CP002684 Genomic DNA Translation: AEE31452.1
CP002684 Genomic DNA Translation: AEE31453.1
CP002684 Genomic DNA Translation: ANM57850.1
CP002684 Genomic DNA Translation: ANM57851.1
CP002684 Genomic DNA Translation: ANM57852.1
AY059796 mRNA Translation: AAL24144.1
AY075633 mRNA Translation: AAL91641.1
AY142655 mRNA Translation: AAN13193.1
PIRiH86446
RefSeqiNP_001320330.1, NM_001333000.1 [Q8RY59-2]
NP_001320331.1, NM_001332998.1 [Q8RY59-2]
NP_001320332.1, NM_001332999.1 [Q8RY59-2]
NP_564391.1, NM_102956.3 [Q8RY59-1]
NP_849739.1, NM_179408.3 [Q8RY59-2]

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...
PDBei

Protein Data Bank RCSB

More...
RCSB PDBi

Protein Data Bank Japan

More...
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5N9QNMR-A468-589[»]
5NGOX-ray2.50A/B/C/D/E/F/G/H269-460[»]
5OAONMR-A500-572[»]
SMRiQ8RY59
ModBaseiSearch...
PDBe-KBiSearch...

Protein-protein interaction databases

BioGridi25349, 34 interactors
DIPiDIP-52884N
IntActiQ8RY59, 30 interactors
STRINGi3702.AT1G32230.1

Proteomic databases

PaxDbiQ8RY59
PRIDEiQ8RY59

Genome annotation databases

EnsemblPlantsiAT1G32230.1; AT1G32230.1; AT1G32230 [Q8RY59-1]
AT1G32230.2; AT1G32230.2; AT1G32230 [Q8RY59-2]
AT1G32230.4; AT1G32230.4; AT1G32230 [Q8RY59-2]
AT1G32230.5; AT1G32230.5; AT1G32230 [Q8RY59-2]
AT1G32230.6; AT1G32230.6; AT1G32230 [Q8RY59-2]
GeneIDi840115
GrameneiAT1G32230.1; AT1G32230.1; AT1G32230 [Q8RY59-1]
AT1G32230.2; AT1G32230.2; AT1G32230 [Q8RY59-2]
AT1G32230.4; AT1G32230.4; AT1G32230 [Q8RY59-2]
AT1G32230.5; AT1G32230.5; AT1G32230 [Q8RY59-2]
AT1G32230.6; AT1G32230.6; AT1G32230 [Q8RY59-2]
KEGGiath:AT1G32230

Organism-specific databases

AraportiAT1G32230
TAIRilocus:2031700 AT1G32230

Phylogenomic databases

eggNOGiENOG410IHK4 Eukaryota
ENOG410YCU9 LUCA
HOGENOMiHOG000240570
InParanoidiQ8RY59
OrthoDBi458629at2759
PhylomeDBiQ8RY59

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q8RY59

Gene expression databases

ExpressionAtlasiQ8RY59 baseline and differential
GenevisibleiQ8RY59 AT

Family and domain databases

DisProtiDP01180
InterProiView protein in InterPro
IPR012317 Poly(ADP-ribose)pol_cat_dom
IPR022003 RST
IPR004170 WWE-dom
PfamiView protein in Pfam
PF00644 PARP, 1 hit
PF12174 RST, 1 hit
PROSITEiView protein in PROSITE
PS51059 PARP_CATALYTIC, 1 hit
PS51879 RST, 1 hit
PS50918 WWE, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRCD1_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q8RY59
Secondary accession number(s): Q93YR6
, Q94KU0, Q9FT85, Q9FVR7
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 28, 2011
Last sequence update: June 1, 2002
Last modified: December 11, 2019
This is version 111 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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