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Protein
Submitted name:

WSSV039

Gene
N/A
Organism
White spot syndrome virus (WSSV) (White spot bacilliform virus)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
WSSV039Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiWhite spot syndrome virus (WSSV) (White spot bacilliform virus)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri92652 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiVirusesdsDNA viruses, no RNA stageNimaviridaeWhispovirus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section only exists in viral entries and indicates the host(s) either as a specific organism or taxonomic group of organisms that are susceptible to be infected by a virus.<p><a href='/help/virus_host' target='_top'>More...</a></p>Virus hostiCrustacea [TaxID: 6657]

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...
ProteinModelPortali
Q8QTG5

Database of comparative protein structure models

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ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini665 – 803DNA_pol_B_exo1InterPro annotationAdd BLAST139

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili1257 – 1277Sequence analysisAdd BLAST21
Coiled coili2087 – 2107Sequence analysisAdd BLAST21

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Coiled coilSequence analysis

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR006172 DNA-dir_DNA_pol_B
IPR017964 DNA-dir_DNA_pol_B_CS
IPR006133 DNA-dir_DNA_pol_B_exonuc
IPR012337 RNaseH-like_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF03104 DNA_pol_B_exo1, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00486 POLBc, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF53098 SSF53098, 1 hit

PROSITE; a protein domain and family database

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PROSITEi
View protein in PROSITE
PS00116 DNA_POLYMERASE_B, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q8QTG5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTSPAPSPSS TPKSSCTTIV NRCGFLLDNN KEVVIYDTNS KFKCEPKNLE
60 70 80 90 100
LIGVLSGVSD NVVTQISPDQ IFVGTYMVKY NWSKSGHERF SDMSNNCLDN
110 120 130 140 150
ITRPSEVIES VIKKTSSDFK MKYTRSLMDH TEKYYFSGDQ KLSKISSWCT
160 170 180 190 200
TPITTVGMQL RLENFVKEEH ETVVVHNPSG MTGFNIFNSS PVYFEVHNEM
210 220 230 240 250
DALIFMAAFL KHNSLWGEIN ANMDLYTFDY AGAFLDERWC HHEKSFSVVR
260 270 280 290 300
AQLINSYYKC RRKIMQALDN NYNNKNKKRK NVGGAPAFTF MSGDGEGGKE
310 320 330 340 350
ALEASFDVIG GTRGGRFGVD STPCPHSSAM QLKLDNEGNY GCIACFASMF
360 370 380 390 400
FVLENPGDES SFISTDASKI GQAQAWIDER LRNNENGGEE NNVFKKTFHM
410 420 430 440 450
LADITQKAHE TAYSNTIPLG PNGRQWNWPT HTVEPIAHEF VTHSLVNTLK
460 470 480 490 500
NLGDRKLPRF NFDILYNLLN PFGKMLLVFI QNCHILTGHK NNENVVPRGS
510 520 530 540 550
ASGKWWTINF VGVNMWTFQV TKCKVEKDRK ISDLACMETL PRLPNPGSTT
560 570 580 590 600
VDDRIVFKGF CRGENLGSVG EVVSDITQSV KNFCLMVENR KFSVDKETGF
610 620 630 640 650
ISSESIVSDP FFSLEVTGCR SNRAQDTINN GRVSARVMRI LKSREGARVW
660 670 680 690 700
LAKDENAIIF ENVNHDTAIS TDAMERAIGQ HKILYYDIET TDKDFTDKKS
710 720 730 740 750
VITSIGFCLC TGGDMTHGGE RGVFGLVAPG SDVEKVKETI INSYDPEEKE
760 770 780 790 800
DIMKQCPQVI EIFTNEFEML LGFGKYIDKV KPHVISGWNN VAFDDPFVFT
810 820 830 840 850
RIVKHLSDHT KDMSYCVADA STAESVLPRA TEGGGGETPY RLSTPQERIQ
860 870 880 890 900
LASTGIFNKL GKFVDKKTGM LKPEMTADLL AGAESQANTK FKERNKLSSS
910 920 930 940 950
NKGSAGWFQK IIGGMCSAIR LDLMKVCEKA YKESLSEFNL NAVLAKVSSV
960 970 980 990 1000
GDKVKNVKDE VDLHFHLLGF LKLKKAQDQA KVHVYCCKDA YLTGIVSTSI
1010 1020 1030 1040 1050
NKEGEIFRLC MDSALTEAVV TANLATPLCI GEGAICRNMG EERADRRGVG
1060 1070 1080 1090 1100
VRRHSIATDT KGGMVSQPIV NHVPYQTIDM TSLYPMTMCQ NNLCTTTFVT
1110 1120 1130 1140 1150
HRQIMQLRDR LVLEKMKNKT TDSLLLLDVI DECNQIVLSE YRPIDIAVAS
1160 1170 1180 1190 1200
WKNSNSNRQT PITRIEESLG LRFIENLDAE KTNNKTWCTN TSPNMNVTAA
1210 1220 1230 1240 1250
GMDYFPEIVC DINMQFAAKV NDDMHIAPAS LEYMLQVLPI MLIDRPYIGA
1260 1270 1280 1290 1300
HITAGKCRTL EDILSELEKD FSVEKDEEII RTHWTFKGQK QYDFCHSPVT
1310 1320 1330 1340 1350
QMARHIIEST GRNIRDYEGN EKFERLVSLS DRIYRRVGAF DSANDPAVRL
1360 1370 1380 1390 1400
WSSRLINVGM LVRTWNVKTD ILKGIIPQMQ ATYRAGRVVM QNKAKEFAKM
1410 1420 1430 1440 1450
GDMKRAGLNK VGQNIMKLGM NSMYGHLALR ARSSRKEFAS GSANTASSIS
1460 1470 1480 1490 1500
NMSATGGIGG GTRHSVTANQ ITENARCVFG NIGCGLQMAL PGTKQTYGDT
1510 1520 1530 1540 1550
DSVFCVHNIV GDGGMIPEYD EQTGKYYYVM DIALKNKMAA IIPILVNSLT
1560 1570 1580 1590 1600
KGIQFVERRD AGVGMMNIAH ERLAVAGLLF AKKTYHMLHF NENSAAFNDM
1610 1620 1630 1640 1650
IKLKSTDNNN KFASFIKRPS HADGYVVPHN PSLILRAAEG PAGKKLKSFL
1660 1670 1680 1690 1700
EEEGIHDEKS MEEWFTSSPT WMAMDASVIS NLYASQIVGV EKGNWIDAMT
1710 1720 1730 1740 1750
SRPIEAGTEM MEAVTQANAA FTPYKKGAFV KKGITPTTKL KGLQSLIARF
1760 1770 1780 1790 1800
LPKIEEKKSC YLDVMKNHVE NFASHITNPA MMITSSRVNK FDTSKEQSRP
1810 1820 1830 1840 1850
NPLALAINNH LNPSSEISLG QKFKTVTSVS SWSLSAEEGE VPAGYFNAGS
1860 1870 1880 1890 1900
VRWDATNMKG SVPAFSVKNL SVVPNAITSV YKMVESDKTA IKSMIAKNVE
1910 1920 1930 1940 1950
VLCSTSANTG FSLRRGALSF NTGVIVTKDV AMACIRSLNN KQMLLFVGGG
1960 1970 1980 1990 2000
KDYGEDDDDD DEEAEEEDEE NGENEENKGD CVTEKKIPGR STNKDVGEET
2010 2020 2030 2040 2050
KTSEKTEGER KGSKTAKGKT EEIASSLSKC GKKDARDVIL DRLLKATHSS
2060 2070 2080 2090 2100
CTNNEERTRV LQQYSNCTLS SYITSVMKLD QRVADQMENL ISQLDQIRNL
2110 2120 2130 2140 2150
SNKKRQEKGG PFKSELDAMV AAVKVKFFPV LDASRKLTQD HWKKCPVSIP
2160 2170 2180 2190 2200
ETREEKPLMG VPFEVALNSL IGKHKCTDTC DMACCQSLYF VLLYTLALKF
2210 2220 2230 2240 2250
ENERLARQIG LDDSVDLMAE MLFGGDKLLA QEVLKRVKDA QDRKLVKSLL
2260 2270 2280 2290 2300
PLNYNHDTNT IIFLFESLRF AQKPVAGMSV SEIKDAVRGL AFSTTTGTVW
2310 2320 2330 2340 2350
NYTDERFFGP LYNMDELCNE RVNGNCKLSF ITGIYHTAAV ELAAACLSCV

L
Length:2,351
Mass (Da):261,884
Last modified:June 1, 2002 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i4BC38F31C1210979
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
AF440570 Genomic DNA Translation: AAL88907.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF440570 Genomic DNA Translation: AAL88907.1

3D structure databases

ProteinModelPortaliQ8QTG5
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

InterProiView protein in InterPro
IPR006172 DNA-dir_DNA_pol_B
IPR017964 DNA-dir_DNA_pol_B_CS
IPR006133 DNA-dir_DNA_pol_B_exonuc
IPR012337 RNaseH-like_sf
PfamiView protein in Pfam
PF03104 DNA_pol_B_exo1, 1 hit
SMARTiView protein in SMART
SM00486 POLBc, 1 hit
SUPFAMiSSF53098 SSF53098, 1 hit
PROSITEiView protein in PROSITE
PS00116 DNA_POLYMERASE_B, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ8QTG5_WSSV
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q8QTG5
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: June 1, 2002
Last sequence update: June 1, 2002
Last modified: November 7, 2018
This is version 75 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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