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Protein

50S ribosomal protein L13

Gene

rpl13

Organism
Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (Methanosarcina frisia)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13UniRule annotation
Gene namesi
Name:rpl13UniRule annotation
Ordered Locus Names:MM_1756
OrganismiMethanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (Methanosarcina frisia)
Taxonomic identifieri192952 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanomicrobiaMethanosarcinalesMethanosarcinaceaeMethanosarcina
Proteomesi
  • UP000000595 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002618421 – 14050S ribosomal protein L13Add BLAST140

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi192952.MM_1756

Structurei

3D structure databases

ProteinModelPortaliQ8PW45
SMRiQ8PW45
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL13 family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04242 Archaea
COG0102 LUCA
HOGENOMiHOG000225287
KOiK02871
OMAiYHNFLHK
OrthoDBiPOG093Z0DQ4

Family and domain databases

CDDicd00392 Ribosomal_L13, 1 hit
Gene3Di3.90.1180.10, 1 hit
HAMAPiMF_01366 Ribosomal_L13, 1 hit
InterProiView protein in InterPro
IPR005822 Ribosomal_L13
IPR023563 Ribosomal_L13_CS
IPR005755 Ribosomal_L13_euk/arc
IPR036899 Ribosomal_L13_sf
PANTHERiPTHR11545 PTHR11545, 1 hit
PTHR11545:SF3 PTHR11545:SF3, 1 hit
PfamiView protein in Pfam
PF00572 Ribosomal_L13, 1 hit
PIRSFiPIRSF002181 Ribosomal_L13, 1 hit
SUPFAMiSSF52161 SSF52161, 1 hit
TIGRFAMsiTIGR01077 L13_A_E, 1 hit
PROSITEiView protein in PROSITE
PS00783 RIBOSOMAL_L13, 1 hit

Sequencei

Sequence statusi: Complete.

Q8PW45-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTVIDAKGLI LGRLASSVAK QLLSGDEKVY IINAEKAIIS GSRAATLREY
60 70 80 90 100
RETRDRGATE FGPYFPKRPD RILKRTIRGM LPYKRARGRD AMSRLKVYVG
110 120 130 140
VPYELKGAET TTIADADMRL LSSNKYVELG EVSQKMGSKF
Length:140
Mass (Da):15,647
Last modified:November 28, 2006 - v2
Checksum:iD5AC0F0AC39499B1
GO

Sequence cautioni

The sequence AAM31452 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE008384 Genomic DNA Translation: AAM31452.1 Different initiation.
RefSeqiWP_011033696.1, NC_003901.1

Genome annotation databases

EnsemblBacteriaiAAM31452; AAM31452; MM_1756
GeneIDi24866085
KEGGimma:MM_1756
PATRICifig|192952.21.peg.2032

Similar proteinsi

Entry informationi

Entry nameiRL13_METMA
AccessioniPrimary (citable) accession number: Q8PW45
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: November 28, 2006
Last modified: June 20, 2018
This is version 84 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

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