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Entry version 127 (07 Oct 2020)
Sequence version 2 (02 Mar 2010)
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Protein

Flowering time control protein FPA

Gene

FPA

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Plays a role in the regulation of flowering time in the autonomous flowering pathway by decreasing FLOWERING LOCUS C mRNA levels. Required for RNA-mediated chromatin silencing of a range of loci in the genome. Cotranscriptionally recognizes aberrant RNA and marks it for silencing. Controls alternative cleavage and polyadenylation on pre-mRNAs and antisense RNAs. Acts redundantly with FCA to prevent the expression of distally polyadenylated antisense RNAs at the FLC locus.3 Publications

Miscellaneous

While FCA requires both FY and FLD, FPA requires FLD but not FY to repress FLC.

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

  • nucleic acid binding Source: GO_Central
  • RNA binding Source: TAIR

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDevelopmental protein, RNA-binding
Biological processDifferentiation, Flowering, Transcription, Transcription regulation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Flowering time control protein FPA
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:FPA
Ordered Locus Names:At2g43410
ORF Names:T1O24.15
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 2

Organism-specific databases

Arabidopsis Information Portal

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Araporti
AT2G43410

The Arabidopsis Information Resource

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TAIRi
locus:2058203, AT2G43410

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the 'Pathology and Biotech' section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

Late flowering.1 Publication

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003917781 – 901Flowering time control protein FPAAdd BLAST901

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q8LPQ9

PRoteomics IDEntifications database

More...
PRIDEi
Q8LPQ9

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
230040 [Q8LPQ9-1]

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q8LPQ9

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the 'Expression' section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified 'at protein level'.<br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed in roots, leaves, stems and flowers. Highest expression in flower stems and meristematic regions.1 Publication

<p>This subsection of the 'Expression' section provides information on the expression of the gene product at various stages of a cell, tissue or organism development. By default, the information is derived from experiments at the mRNA level, unless specified 'at the protein level'.<p><a href='/help/developmental_stage' target='_top'>More...</a></p>Developmental stagei

Expressed throughout the plant life cycle.1 Publication

<p>This subsection of the 'Expression' section reports the experimentally proven effects of inducers and repressors (usually chemical compounds or environmental factors) on the level of protein (or mRNA) expression (up-regulation, down-regulation, constitutive expression).<p><a href='/help/induction' target='_top'>More...</a></p>Inductioni

Negative feedback mediated by FPA itself.1 Publication

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q8LPQ9, baseline and differential

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...
BioGRIDi
4278, 4 interactors

Protein interaction database and analysis system

More...
IntActi
Q8LPQ9, 3 interactors

STRING: functional protein association networks

More...
STRINGi
3702.AT2G43410.4

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

1901
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
Q8LPQ9

Database of comparative protein structure models

More...
ModBasei
Search...

Protein Data Bank in Europe - Knowledge Base

More...
PDBe-KBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini18 – 90RRM 1PROSITE-ProRule annotationAdd BLAST73
Domaini95 – 166RRM 2PROSITE-ProRule annotationAdd BLAST72
Domaini206 – 281RRM 3PROSITE-ProRule annotationAdd BLAST76
Domaini441 – 537SPOCAdd BLAST97

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi721 – 724Poly-Pro4
Compositional biasi782 – 891Gln-richAdd BLAST110

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the RRM Spen family.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
KOG0118, Eukaryota

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q8LPQ9

Identification of Orthologs from Complete Genome Data

More...
OMAi
DINHIPR

Database of Orthologous Groups

More...
OrthoDBi
487634at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q8LPQ9

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.30.70.330, 3 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR012677, Nucleotide-bd_a/b_plait_sf
IPR035979, RBD_domain_sf
IPR000504, RRM_dom
IPR012921, SPOC_C

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00076, RRM_1, 3 hits
PF07744, SPOC, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

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SMARTi
View protein in SMART
SM00360, RRM, 3 hits

Superfamily database of structural and functional annotation

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SUPFAMi
SSF54928, SSF54928, 3 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50102, RRM, 3 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (3+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 3 <p>This subsection of the 'Sequence' section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform. This section is only present in reviewed entries, i.e. in UniProtKB/Swiss-Prot.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 3 described isoforms and 1 potential isoform that is computationally mapped.Show allAlign All

Isoform 1 (identifier: Q8LPQ9-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MALSMKPFRA DDSGFQSNNL WVGSLTPETT ESDLTELFGR YGDIDRITVY
60 70 80 90 100
SSRGFAFIYY RHVEEAVAAK EALQGANLNG SQIKIEYARP AKPCKSLWVG
110 120 130 140 150
GIGPNVSKDD LEEEFSKFGK IEDFRFLRER KTAFIDYYEM DDALQAKSMN
160 170 180 190 200
GKPMGGSFLR VDFLRSQAPK KEQWAGSYDN RNGNMNHKPQ YPHSYEDFKG
210 220 230 240 250
DVQPSKVLWI GFPPTATQCN DEQILHNAMI LFGEIERVKS YPSRNFALVE
260 270 280 290 300
FRSAEEARQC KEGLQGRLFN NPRIKIMYSN DELPPEQDDT SFYSGMKRSR
310 320 330 340 350
TDMFNNDPSF VSSPHSTGIP GSMRPLRGTN ERSYNGAEYN DVVGKEPNWR
360 370 380 390 400
RPSANGTGIL PSPTGPGILP SPAQGTRRPM RSNPDSWEGY DPAQLVRESK
410 420 430 440 450
RTRRDGSVDG FTPMGVDERS FGRGSVAARP IRGPPDSDHI WRGMIAKGGT
460 470 480 490 500
PVCCARCVPM GKGIETKLPE VVNCSARTDL NMLAKHYAVA IGCEIVFFVP
510 520 530 540 550
DREEDFASYT EFLRYLSSKD RAGVAKLDDG TTLFLVPPSD FLTDVLQVTR
560 570 580 590 600
QERLYGVVLK LPPPAVPVTA SYRQESQSNP LHYMDQARDS PANASHSLYP
610 620 630 640 650
PRENYIRGAP EHLTAASKPS VSEPLRIPNN AAPQAGVSLT PELLATLASI
660 670 680 690 700
LPATSQPAAP ESHQPMSGPS TVVSTAHQSN GLYNGEAPSQ AWKRGPQTVH
710 720 730 740 750
DASNQSFQQY GNQYTPAGQL PPPPSRYPPA SNNPNYTSGM VHGNMQYQSQ
760 770 780 790 800
SVNMPQLSPL PNMPHNNYSM YTQGSSNHPV SQPMVQQYQP EASMPNQNYG
810 820 830 840 850
PIPSYQQANF HGVTTNQAQN LNPSQFQAAM QPPADKANLE PQNQALRLQP
860 870 880 890 900
MISGDGQGTT DGEVDKNQRY QSTLQFAANL LLQIQQKQQQ QSSGTPAGQG

P
Length:901
Mass (Da):99,598
Last modified:March 2, 2010 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i39E880D9D8FFF355
GO
Isoform 2 (identifier: Q8LPQ9-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     295-337: Missing.

Show »
Length:858
Mass (Da):94,902
Checksum:i5A194515A6D3C64B
GO
Isoform 3 (identifier: Q8LPQ9-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-324: Missing.
     325-351: PLRGTNERSYNGAEYNDVVGKEPNWRR → MSCLLSKTILVFTLNTMTLLVRSQTGG

Show »
Length:577
Mass (Da):62,451
Checksum:iD6C36A194B7C347F
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1P8AXG2A0A1P8AXG2_ARATH
RNA binding protein
FPA At2g43410, T1O24.15
762Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAB64314 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AAX51263 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti110D → G in BAH19726 (PubMed:19423640).Curated1
Sequence conflicti282E → G in BAH19726 (PubMed:19423640).Curated1
Sequence conflicti494E → G in BAH19726 (PubMed:19423640).Curated1
Sequence conflicti663H → P in BAH19726 (PubMed:19423640).Curated1
Sequence conflicti687A → V in BAH19726 (PubMed:19423640).Curated1
Sequence conflicti888Q → R in AAM19833 (PubMed:14593172).Curated1
Sequence conflicti888Q → R in AAO23594 (PubMed:14593172).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0387501 – 324Missing in isoform 3. 1 PublicationAdd BLAST324
Alternative sequenceiVSP_038751295 – 337Missing in isoform 2. CuratedAdd BLAST43
Alternative sequenceiVSP_038752325 – 351PLRGT…PNWRR → MSCLLSKTILVFTLNTMTLL VRSQTGG in isoform 3. 1 PublicationAdd BLAST27

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AY849993 Genomic DNA Translation: AAX51263.1 Sequence problems.
AC002335 Genomic DNA Translation: AAB64314.1 Sequence problems.
CP002685 Genomic DNA Translation: AEC10262.1
CP002685 Genomic DNA Translation: AEC10263.1
CP002685 Genomic DNA Translation: AEC10264.1
CP002685 Genomic DNA Translation: AEC10265.1
CP002685 Genomic DNA Translation: ANM61362.1
AY094463 mRNA Translation: AAM19833.1
BT003029 mRNA Translation: AAO23594.1
AK317032 mRNA Translation: BAH19726.1
AK318833 mRNA Translation: BAH56948.1

NCBI Reference Sequences

More...
RefSeqi
NP_001078046.1, NM_001084577.2 [Q8LPQ9-1]
NP_001078047.1, NM_001084578.1 [Q8LPQ9-1]
NP_001078048.1, NM_001084579.2 [Q8LPQ9-1]
NP_001323585.1, NM_001337028.1 [Q8LPQ9-2]
NP_181869.2, NM_129902.3 [Q8LPQ9-2]

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT2G43410.1; AT2G43410.1; AT2G43410 [Q8LPQ9-2]
AT2G43410.2; AT2G43410.2; AT2G43410 [Q8LPQ9-1]
AT2G43410.3; AT2G43410.3; AT2G43410 [Q8LPQ9-1]
AT2G43410.4; AT2G43410.4; AT2G43410 [Q8LPQ9-1]
AT2G43410.6; AT2G43410.6; AT2G43410 [Q8LPQ9-2]

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
818942

Gramene; a comparative resource for plants

More...
Gramenei
AT2G43410.1; AT2G43410.1; AT2G43410 [Q8LPQ9-2]
AT2G43410.2; AT2G43410.2; AT2G43410 [Q8LPQ9-1]
AT2G43410.3; AT2G43410.3; AT2G43410 [Q8LPQ9-1]
AT2G43410.4; AT2G43410.4; AT2G43410 [Q8LPQ9-1]
AT2G43410.6; AT2G43410.6; AT2G43410 [Q8LPQ9-2]

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT2G43410

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY849993 Genomic DNA Translation: AAX51263.1 Sequence problems.
AC002335 Genomic DNA Translation: AAB64314.1 Sequence problems.
CP002685 Genomic DNA Translation: AEC10262.1
CP002685 Genomic DNA Translation: AEC10263.1
CP002685 Genomic DNA Translation: AEC10264.1
CP002685 Genomic DNA Translation: AEC10265.1
CP002685 Genomic DNA Translation: ANM61362.1
AY094463 mRNA Translation: AAM19833.1
BT003029 mRNA Translation: AAO23594.1
AK317032 mRNA Translation: BAH19726.1
AK318833 mRNA Translation: BAH56948.1
RefSeqiNP_001078046.1, NM_001084577.2 [Q8LPQ9-1]
NP_001078047.1, NM_001084578.1 [Q8LPQ9-1]
NP_001078048.1, NM_001084579.2 [Q8LPQ9-1]
NP_001323585.1, NM_001337028.1 [Q8LPQ9-2]
NP_181869.2, NM_129902.3 [Q8LPQ9-2]

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...
PDBei

Protein Data Bank RCSB

More...
RCSB PDBi

Protein Data Bank Japan

More...
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5KXFX-ray2.70A433-565[»]
SMRiQ8LPQ9
ModBaseiSearch...
PDBe-KBiSearch...

Protein-protein interaction databases

BioGRIDi4278, 4 interactors
IntActiQ8LPQ9, 3 interactors
STRINGi3702.AT2G43410.4

PTM databases

iPTMnetiQ8LPQ9

Proteomic databases

PaxDbiQ8LPQ9
PRIDEiQ8LPQ9
ProteomicsDBi230040 [Q8LPQ9-1]

Genome annotation databases

EnsemblPlantsiAT2G43410.1; AT2G43410.1; AT2G43410 [Q8LPQ9-2]
AT2G43410.2; AT2G43410.2; AT2G43410 [Q8LPQ9-1]
AT2G43410.3; AT2G43410.3; AT2G43410 [Q8LPQ9-1]
AT2G43410.4; AT2G43410.4; AT2G43410 [Q8LPQ9-1]
AT2G43410.6; AT2G43410.6; AT2G43410 [Q8LPQ9-2]
GeneIDi818942
GrameneiAT2G43410.1; AT2G43410.1; AT2G43410 [Q8LPQ9-2]
AT2G43410.2; AT2G43410.2; AT2G43410 [Q8LPQ9-1]
AT2G43410.3; AT2G43410.3; AT2G43410 [Q8LPQ9-1]
AT2G43410.4; AT2G43410.4; AT2G43410 [Q8LPQ9-1]
AT2G43410.6; AT2G43410.6; AT2G43410 [Q8LPQ9-2]
KEGGiath:AT2G43410

Organism-specific databases

AraportiAT2G43410
TAIRilocus:2058203, AT2G43410

Phylogenomic databases

eggNOGiKOG0118, Eukaryota
InParanoidiQ8LPQ9
OMAiDINHIPR
OrthoDBi487634at2759
PhylomeDBiQ8LPQ9

Miscellaneous databases

Protein Ontology

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PROi
PR:Q8LPQ9

Gene expression databases

ExpressionAtlasiQ8LPQ9, baseline and differential

Family and domain databases

Gene3Di3.30.70.330, 3 hits
InterProiView protein in InterPro
IPR012677, Nucleotide-bd_a/b_plait_sf
IPR035979, RBD_domain_sf
IPR000504, RRM_dom
IPR012921, SPOC_C
PfamiView protein in Pfam
PF00076, RRM_1, 3 hits
PF07744, SPOC, 1 hit
SMARTiView protein in SMART
SM00360, RRM, 3 hits
SUPFAMiSSF54928, SSF54928, 3 hits
PROSITEiView protein in PROSITE
PS50102, RRM, 3 hits

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiFPA_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q8LPQ9
Secondary accession number(s): A8MQX1
, B9DG59, C0Z2L9, O22855, Q58T22
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 2, 2010
Last sequence update: March 2, 2010
Last modified: October 7, 2020
This is version 127 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families
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