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Protein

Transcription factor MYB86

Gene

MYB86

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Probable transcription factor.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi37 – 61H-T-H motifPROSITE-ProRule annotationAdd BLAST25
DNA bindingi89 – 112H-T-H motifPROSITE-ProRule annotationAdd BLAST24

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionActivator, DNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription factor MYB86
Alternative name(s):
Myb homolog 4
Short name:
AtMyb4
Myb-related protein 86
Short name:
AtMYB86
Gene namesi
Name:MYB86
Synonyms:MYB4
Ordered Locus Names:At5g26660
ORF Names:F21E10.4
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G26660
TAIRilocus:2146804 AT5G26660

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001970771 – 352Transcription factor MYB86Add BLAST352

Proteomic databases

PaxDbiQ8LPH6

Expressioni

Tissue specificityi

Expressed in stems, flowers and seeds. Weakly expressed in leaves and roots.1 Publication

Gene expression databases

ExpressionAtlasiQ8LPH6 baseline and differential
GenevisibleiQ8LPH6 AT

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

BioGridi17998, 3 interactors
IntActiQ8LPH6, 9 interactors
STRINGi3702.AT5G26660.1

Structurei

3D structure databases

ProteinModelPortaliQ8LPH6
SMRiQ8LPH6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini9 – 61HTH myb-type 1PROSITE-ProRule annotationAdd BLAST53
Domaini62 – 116HTH myb-type 2PROSITE-ProRule annotationAdd BLAST55

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG0048 Eukaryota
COG5147 LUCA
HOGENOMiHOG000113702
InParanoidiQ8LPH6
KOiK09422
OMAiHDANVEV
OrthoDBiEOG09360FFL
PhylomeDBiQ8LPH6

Family and domain databases

CDDicd00167 SANT, 2 hits
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017930 Myb_dom
IPR001005 SANT/Myb
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 2 hits
SMARTiView protein in SMART
SM00717 SANT, 2 hits
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 2 hits

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Q8LPH6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGRHSCCFKQ KLRKGLWSPE EDEKLLNYIT RHGHGCWSSV PKLAGLQRCG
60 70 80 90 100
KSCRLRWINY LRPDLKRGAF SQDEESLIIE LHAALGNRWS QIATRLPGRT
110 120 130 140 150
DNEIKNFWNS CLKKKLRRKG IDPTTHKPLI TNELQSLNVI DQKLTSSEVV
160 170 180 190 200
KSTGSINNLH DQSMVVSSQQ GPWWFPANTT TTNQNSAFCF SSSNTTTVSD
210 220 230 240 250
QIVSLISSMS TSSSPTPMTS NFSPAPNNWE QLNYCNTVPS QSNSIYSAFF
260 270 280 290 300
GNQYTEASQT MNNNNPLVDQ HHHHQDMKSW ASEILHYTEH NQSSETVIEA
310 320 330 340 350
EVKPDIANYY WRSASSSSSP NQEAATLLHD ANVEVYGKNL QKLNNMVFDQ

SL
Length:352
Mass (Da):39,790
Last modified:October 1, 2002 - v1
Checksum:iE6CF061C0176071D
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1P8BGT1A0A1P8BGT1_ARATH
Myb domain protein 86
MYB86 ATMYB4, ATMYB4-old, ATMYB86, myb domain protein 4, myb domain protein 86 MYB86 ATMYB4, ATMYB4-old, ATMYB86, myb domain protein 4, myb domain protein 86, At5g26660
321Annotation score:

Sequence cautioni

The sequence AAC13592 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti246Y → F in BAA21619 (Ref. 1) Curated1
Sequence conflicti291N → S (PubMed:9839469).Curated1
Sequence conflicti346M → T in BAA21619 (Ref. 1) Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB005889 mRNA Translation: BAA21619.1
AF058914 Genomic DNA Translation: AAC13592.1 Sequence problems.
CP002688 Genomic DNA Translation: AED93580.1
AY519629 mRNA Translation: AAS10099.1
AY099777 mRNA Translation: AAM20628.1
BT008740 mRNA Translation: AAP42753.1
AF062913 mRNA Translation: AAC83635.1
PIRiT01196
T51685
RefSeqiNP_850879.1, NM_180548.4
UniGeneiAt.227

Genome annotation databases

EnsemblPlantsiAT5G26660.1; AT5G26660.1; AT5G26660
GeneIDi832723
GrameneiAT5G26660.1; AT5G26660.1; AT5G26660
KEGGiath:AT5G26660

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB005889 mRNA Translation: BAA21619.1
AF058914 Genomic DNA Translation: AAC13592.1 Sequence problems.
CP002688 Genomic DNA Translation: AED93580.1
AY519629 mRNA Translation: AAS10099.1
AY099777 mRNA Translation: AAM20628.1
BT008740 mRNA Translation: AAP42753.1
AF062913 mRNA Translation: AAC83635.1
PIRiT01196
T51685
RefSeqiNP_850879.1, NM_180548.4
UniGeneiAt.227

3D structure databases

ProteinModelPortaliQ8LPH6
SMRiQ8LPH6
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi17998, 3 interactors
IntActiQ8LPH6, 9 interactors
STRINGi3702.AT5G26660.1

Proteomic databases

PaxDbiQ8LPH6

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G26660.1; AT5G26660.1; AT5G26660
GeneIDi832723
GrameneiAT5G26660.1; AT5G26660.1; AT5G26660
KEGGiath:AT5G26660

Organism-specific databases

AraportiAT5G26660
TAIRilocus:2146804 AT5G26660

Phylogenomic databases

eggNOGiKOG0048 Eukaryota
COG5147 LUCA
HOGENOMiHOG000113702
InParanoidiQ8LPH6
KOiK09422
OMAiHDANVEV
OrthoDBiEOG09360FFL
PhylomeDBiQ8LPH6

Miscellaneous databases

PROiPR:Q8LPH6

Gene expression databases

ExpressionAtlasiQ8LPH6 baseline and differential
GenevisibleiQ8LPH6 AT

Family and domain databases

CDDicd00167 SANT, 2 hits
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017930 Myb_dom
IPR001005 SANT/Myb
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 2 hits
SMARTiView protein in SMART
SM00717 SANT, 2 hits
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 2 hits
ProtoNetiSearch...

Entry informationi

Entry nameiMYB86_ARATH
AccessioniPrimary (citable) accession number: Q8LPH6
Secondary accession number(s): O22685, O65249, Q9SBF4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 21, 2004
Last sequence update: October 1, 2002
Last modified: October 10, 2018
This is version 114 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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Main funding by: National Institutes of Health

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