Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Entry version 113 (12 Aug 2020)
Sequence version 1 (01 Oct 2002)
Previous versions | rss
Help videoAdd a publicationFeedback
Protein

Vacuolar sorting protein 39

Gene

VPS39

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Essential protein required during embryogenesis (PubMed:15266054, PubMed:29463724). Believed to act in part as a component of the putative HOPS endosomal tethering complex. HOPS is required for the central vacuole formation (PubMed:29463724). May play a role in clustering and fusion of late endosomes and lysosomes. Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Required for fusion of endosomes and autophagosomes with lysosomes (By similarity).By similarity2 Publications

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processAutophagy, Protein transport, Transport

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Vacuolar sorting protein 391 Publication
Alternative name(s):
Protein EMBRYO DEFECTIVE 27541 Publication
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:VPS391 Publication
Synonyms:EMB27541 Publication
Ordered Locus Names:At4g36630Imported
ORF Names:AP22.59Imported, C7A10.730Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 4

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT4G36630

The Arabidopsis Information Resource

More...
TAIRi
locus:2115355, AT4G36630

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Membrane, Vacuole

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the 'Pathology and Biotech' section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

Defective embryo arrested at cotyledon stage (PubMed:15266054, PubMed:29463724). Heterozygous mutants produce some yellowish seeds with developmentally retarded or abnormally shaped embryos. Conditional dexamethasone (DEX)-inducible mutants exhibit altered vacuolar morphology showing fragmented round vacuoles (PubMed:29463724).2 Publications

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004443071 – 1000Vacuolar sorting protein 39Add BLAST1000

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q8L5Y0

PRoteomics IDEntifications database

More...
PRIDEi
Q8L5Y0

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
242482

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q8L5Y0

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q8L5Y0, baseline and differential

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Homooligomer (By similarity).

Component of the homotypic fusion and vacuole protein sorting (HOPS) complex composed of the class C Vps core proteins VPS11, VCL1, VPS18 and VPS33, which in HOPS further associates with VPS39 and VPS41 (PubMed:29463724).

Interacts directly with VPS11. Binds to RABG3B (PubMed:29463724).

By similarity1 Publication

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
3702.AT4G36630.1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini16 – 282CNHPROSITE-ProRule annotationAdd BLAST267
<p>This subsection of the 'Family and Domains' section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati607 – 796CHCRPROSITE-ProRule annotationAdd BLAST190

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the VAM6/VPS39 family.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG2063, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_004190_0_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q8L5Y0

KEGG Orthology (KO)

More...
KOi
K20183

Identification of Orthologs from Complete Genome Data

More...
OMAi
RTIRYLQ

Database of Orthologous Groups

More...
OrthoDBi
291710at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q8L5Y0

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR000547, Clathrin_H-chain/VPS_repeat
IPR001180, CNH_dom
IPR032914, Vam6/VPS39/TRAP1
IPR019452, VPS39/TGF_beta_rcpt-assoc_1
IPR019453, VPS39/TGF_beta_rcpt-assoc_2
IPR036322, WD40_repeat_dom_sf

The PANTHER Classification System

More...
PANTHERi
PTHR12894, PTHR12894, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00637, Clathrin, 1 hit
PF00780, CNH, 1 hit
PF10366, Vps39_1, 1 hit
PF10367, Vps39_2, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF50978, SSF50978, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50219, CNH, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (3)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 3 <p>This subsection of the 'Sequence' section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform. This section is only present in reviewed entries, i.e. in UniProtKB/Swiss-Prot.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket
Isoform 1 (identifier: Q8L5Y0-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MVHNAYDSFQ LLKDCPARID AVESYGSKLF AGCYDGSLRI YSPPESSASD
60 70 80 90 100
PSELHQETYV LEKTVAGFSK KPIVAMEVLA SRELLLSLSE SIAFHGLPNL
110 120 130 140 150
ETVAVITKAK GANAYSWDDR RGFLCFSRQK RVCVFKHDGG GGFVEVRDYG
160 170 180 190 200
VPDTVKSISW CGENICLGIK KEYVILNTAN GTLSEVFPSG RVAPPLVISL
210 220 230 240 250
PSGELILGKE NIGVFVDQNG KLLQTERICW SEAPTSIVIQ NPYAIALLPR
260 270 280 290 300
RVEVRLLRSP YPLIQTIVLQ NIRRLVKSNN AVIVGLDNSV YVLFPVSIGA
310 320 330 340 350
QIVQLTASGN FEEALALCKV LPPDESSLRA AKESSIHTRF AHYLFENGSY
360 370 380 390 400
EEAMEHFLAS QVDITHVLSM YPSIILPKTT IIPQPDKMVD ISGDEASLSR
410 420 430 440 450
GSSGISDDME SSSPRYFLES EDNADLESKK MSHNTLMALI KYLLKRRPAV
460 470 480 490 500
IEKATSEGTE EVISDAVGKT YGANDSSKSK KSSKGRGMIP LNSGAREMAA
510 520 530 540 550
ILDTALLQAL LHTGQSGAAI ELLKGVNYSD VKICEEILMK SKNYSALLEL
560 570 580 590 600
FKSNSMHHEA LKLLNQLADE SKTNQSQTDV TQIFSPELII EYLKPLCRTD
610 620 630 640 650
PMLVLEYSML VLESCPTQTI DLFLSGNISA DLVNSYLKQH APNMQGRYLE
660 670 680 690 700
LMMAMNDTAV SGNLQNEMVQ IYLSEVLDLY AAKSAQQKWD EKDHPPERKK
710 720 730 740 750
LLSALESISG YSPQPLLKRL PRDALYEERA VILGKMNQHE LALSIYVHKL
760 770 780 790 800
HAPDLALAYC DRIYESVTYL PSGKPSSNIY LTVLQIYLNP KKSAKDFAKR
810 820 830 840 850
IVALGSFESS DTTKMMDSVL SSKAKGGRSK KIVAIEGAED MRVGLSSSTD
860 870 880 890 900
SGRSDVDTEE PLEEGDSTVM ISEVLDLLSQ RWERINGAQA LKLLPRETKL
910 920 930 940 950
HNLLPFLAPL LRNSSEAHRN FSVIKSLRQS ENLQVKEELY KHRKGVAQVT
960 970 980 990 1000
SESMCSLCNK KIGTSVFAVY PNGKTLVHFV CFRDSQGMKA VSKTTHGRRR
Length:1,000
Mass (Da):110,639
Last modified:October 1, 2002 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iEB6D33933DAE99A0
GO
Isoform 2 (identifier: Q8L5Y0-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     902-916: NLLPFLAPLLRNSSE → VNVLNLTYTYPITTY
     917-1000: Missing.

Show »
Length:916
Mass (Da):101,207
Checksum:i801A5D6A0B7C06E4
GO
Isoform 3 (identifier: Q8L5Y0-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-353: Missing.
     902-916: NLLPFLAPLLRNSSE → VNVLNLTYTYPITTY
     917-1000: Missing.

Show »
Length:563
Mass (Da):62,466
Checksum:iFA315A8788EFF529
GO

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence CAB16830 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence CAB80329 differs from that shown. Reason: Erroneous gene model prediction.Curated

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0595801 – 353Missing in isoform 3. Add BLAST353
Alternative sequenceiVSP_059581902 – 916NLLPF…RNSSE → VNVLNLTYTYPITTY in isoform 2 and isoform 3. Add BLAST15
Alternative sequenceiVSP_059582917 – 1000Missing in isoform 2 and isoform 3. Add BLAST84

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
Z99708 Genomic DNA Translation: CAB16830.1 Sequence problems.
AL161589 Genomic DNA Translation: CAB80329.1 Sequence problems.
CP002687 Genomic DNA Translation: AEE86679.1
CP002687 Genomic DNA Translation: ANM66487.1
AY099879 mRNA Translation: AAM20730.1
AK318654 mRNA Translation: BAH56769.1

Protein sequence database of the Protein Information Resource

More...
PIRi
E85432

NCBI Reference Sequences

More...
RefSeqi
NP_001328378.1, NM_001342413.1 [Q8L5Y0-2]
NP_195381.6, NM_119826.8 [Q8L5Y0-1]

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT4G36630.1; AT4G36630.1; AT4G36630 [Q8L5Y0-1]
AT4G36630.2; AT4G36630.2; AT4G36630 [Q8L5Y0-2]

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
829815

Gramene; a comparative resource for plants

More...
Gramenei
AT4G36630.1; AT4G36630.1; AT4G36630 [Q8L5Y0-1]
AT4G36630.2; AT4G36630.2; AT4G36630 [Q8L5Y0-2]

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT4G36630

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

<p>This subsection of the <a href="http://www.uniprot.org/manual/cross%5Freferences%5Fsection">Cross-references</a> section provides links to various web resources that are relevant for a specific protein.<p><a href='/help/web_resource' target='_top'>More...</a></p>Web resourcesi

Seed defective Arabidopsis mutants

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z99708 Genomic DNA Translation: CAB16830.1 Sequence problems.
AL161589 Genomic DNA Translation: CAB80329.1 Sequence problems.
CP002687 Genomic DNA Translation: AEE86679.1
CP002687 Genomic DNA Translation: ANM66487.1
AY099879 mRNA Translation: AAM20730.1
AK318654 mRNA Translation: BAH56769.1
PIRiE85432
RefSeqiNP_001328378.1, NM_001342413.1 [Q8L5Y0-2]
NP_195381.6, NM_119826.8 [Q8L5Y0-1]

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi3702.AT4G36630.1

PTM databases

iPTMnetiQ8L5Y0

Proteomic databases

PaxDbiQ8L5Y0
PRIDEiQ8L5Y0
ProteomicsDBi242482

Genome annotation databases

EnsemblPlantsiAT4G36630.1; AT4G36630.1; AT4G36630 [Q8L5Y0-1]
AT4G36630.2; AT4G36630.2; AT4G36630 [Q8L5Y0-2]
GeneIDi829815
GrameneiAT4G36630.1; AT4G36630.1; AT4G36630 [Q8L5Y0-1]
AT4G36630.2; AT4G36630.2; AT4G36630 [Q8L5Y0-2]
KEGGiath:AT4G36630

Organism-specific databases

AraportiAT4G36630
TAIRilocus:2115355, AT4G36630

Phylogenomic databases

eggNOGiKOG2063, Eukaryota
HOGENOMiCLU_004190_0_0_1
InParanoidiQ8L5Y0
KOiK20183
OMAiRTIRYLQ
OrthoDBi291710at2759
PhylomeDBiQ8L5Y0

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q8L5Y0

Gene expression databases

ExpressionAtlasiQ8L5Y0, baseline and differential

Family and domain databases

InterProiView protein in InterPro
IPR000547, Clathrin_H-chain/VPS_repeat
IPR001180, CNH_dom
IPR032914, Vam6/VPS39/TRAP1
IPR019452, VPS39/TGF_beta_rcpt-assoc_1
IPR019453, VPS39/TGF_beta_rcpt-assoc_2
IPR036322, WD40_repeat_dom_sf
PANTHERiPTHR12894, PTHR12894, 1 hit
PfamiView protein in Pfam
PF00637, Clathrin, 1 hit
PF00780, CNH, 1 hit
PF10366, Vps39_1, 1 hit
PF10367, Vps39_2, 1 hit
SUPFAMiSSF50978, SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS50219, CNH, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiVPS39_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q8L5Y0
Secondary accession number(s): A0A1P8B4G5
, C0Z240, O23218, Q304A1
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 23, 2018
Last sequence update: October 1, 2002
Last modified: August 12, 2020
This is version 113 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again